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Plant protein annotation program

Statistics

UniProt release 2015_08 - Jul-22, 2015 contains a total of 549,008 reviewed entries, which includes 36,719 entries from 1,986 species of Viridiplantae.

Arabidospis thaliana - 14,095 reviewed entries.

Number of canonical and isoform protein sequences: 15,993 (download data in FASTA format)

Evidence for the existence of protein Percentage of entries
at protein level 37%
at transcript level 49.4%
inferred from homology 11.2%
predicted 1.6%
uncertain 0.8%

Annotation categories Entries with Number of annotations Coverage
PubMed citations 14,073 10,601 unique 99.8%
Alternative products 2,800 4,701 19.9%
General annotation 14,023 71,909 99.5%
Function 9,560 9,634 67.8%
Catalytic activity 3,678 4,060 26.1%
Subcellular location 0 0 N/A
Sequence annotation 13,490 119,324 95.7%
Amino acid modifications 4,021 14,374 28.5%
Natural Variant 128 819 0.9%
Cross-references 14,095 532,194 100%
EMBL 14,065 67,504 99.8%
InterPro 13,379 41,560 94.9%
PDB 418 921 3%
RefSeq 13,930 17,173 98.8%
TAIR 14,024 14,080 99.5%

100% of reviewed Arabidopsis thaliana entries are annotated with at least one keyword .

92.2% of reviewed Arabidopsis thaliana entries are annotated with at least one GO (Gene Ontology ) term.

Oryza sativa subsp. japonica (Rice) - 3,363 reviewed entries.

Number of canonical and isoform protein sequences: 3,620 (download data in FASTA format)

Evidence for the existence of protein Percentage of entries
at protein level 12.2%
at transcript level 69%
inferred from homology 18.4%
predicted N/A
uncertain 0.4%

Annotation categories Entries with Number of annotations Coverage
PubMed citations 3,361 1,078 unique 99.9%
Alternative products 237 494 7%
General annotation 3,359 15,730 99.9%
Function 2,531 2,555 75.3%
Catalytic activity 1,166 1,267 34.7%
Subcellular location 0 0 N/A
Sequence annotation 3,130 25,042 93.1%
Amino acid modifications 636 1,929 18.9%
Natural Variant 7 22 0.2%
Cross-references 3,363 102,326 100%
EMBL 3,363 13,046 100%
InterPro 3,292 11,366 97.9%
PDB 45 103 1.3%
RefSeq 2,951 3,010 87.7%

100% of reviewed Oryza sativa subsp. japonica entries are annotated with at least one keyword .

98.1% of reviewed Oryza sativa subsp. japonica entries are annotated with at least one GO (Gene Ontology ) term.

Oryza sativa subsp. indica (Rice) - 712 reviewed entries.

Number of canonical and isoform protein sequences: 721 (download data in FASTA format)

Evidence for the existence of protein Percentage of entries
at protein level 8%
at transcript level 27.8%
inferred from homology 64%
predicted N/A
uncertain 0.1%

Annotation categories Entries with Number of annotations Coverage
PubMed citations 707 202 unique 99.3%
Alternative products 6 15 0.8%
General annotation 712 2,820 100%
Function 588 596 82.6%
Catalytic activity 207 236 29.1%
Subcellular location 0 0 N/A
Sequence annotation 654 4,589 91.9%
Amino acid modifications 101 290 14.2%
Natural Variant 5 8 0.7%
Cross-references 712 14,813 100%
EMBL 712 1,167 100%
InterPro 682 2,115 95.8%
PDB 1 1 0.1%
RefSeq 59 66 8.3%

99.9% of reviewed Oryza sativa subsp. indica entries are annotated with at least one keyword .

98.2% of reviewed Oryza sativa subsp. indica entries are annotated with at least one GO (Gene Ontology ) term.