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RALF, a growing family of plant peptide hormones | Cross-references to ChEMBL and PaxDb | Removal of cross-reference to ECO2DBASE and TIGR | New format of the documentation files yeast.txt, yeast chromosome files, pombe.txt and calbican.txt
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Sex by deception | Update to Reference proteomes in UniProtKB
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10K UniProtKB/Swiss-Prot Arabidopsis thaliana entries | Cross-references to Allergome
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Program › Plant protein annotation program
Statistics
UniProt release 2013_05 - May-01, 2013 contains a total of 540,052 reviewed entries, which includes 33,813 entries from 1,964 species of Viridiplantae.
Arabidospis thaliana - 12,019 reviewed entries.
Number of canonical and isoform protein sequences: 13,507 (download data in FASTA format)
| Evidence for the existence of protein | Percentage of entries |
|---|---|
| at protein level | 34% |
| at transcript level | 53.1% |
| inferred from homology | 8.6% |
| predicted | 3.5% |
| uncertain | 0.9% |
| Annotation categories | Entries with | Number of annotations | Coverage |
|---|---|---|---|
| PubMed citations | 11,996 | 8,161 unique | 99.8% |
| Alternative products | 2,326 | 3,817 | 19.4% |
| General annotation | 12,008 | 74,164 | 99.9% |
| Function | 7,608 | 7,661 | 63.3% |
| Catalytic activity | 3,200 | 3,520 | 26.6% |
| Subcellular location | 8,701 | 13,788 | 72.4% |
| Sequence annotation | 11,461 | 100,157 | 95.4% |
| Amino acid modifications | 3,171 | 12,242 | 26.4% |
| Natural Variant | 129 | 839 | 1.1% |
| Cross-references | 12,019 | 393,407 | 100% |
| EMBL | 11,992 | 57,539 | 99.8% |
| InterPro | 11,342 | 34,124 | 94.4% |
| PDB | 333 | 708 | 2.8% |
| RefSeq | 11,900 | 14,535 | 99% |
| TAIR | 11,983 | 12,036 | 99.7% |
100% of reviewed Arabidopsis thaliana entries are annotated with at least one keyword .
91.5% of reviewed Arabidopsis thaliana entries are annotated with at least one GO (Gene Ontology ) term.
Oryza sativa subsp. japonica (Rice) - 3,031 reviewed entries.
Number of canonical and isoform protein sequences: 3,274 (download data in FASTA format)
| Evidence for the existence of protein | Percentage of entries |
|---|---|
| at protein level | 10.9% |
| at transcript level | 82.8% |
| inferred from homology | 5.7% |
| predicted | 0.2% |
| uncertain | 0.4% |
| Annotation categories | Entries with | Number of annotations | Coverage |
|---|---|---|---|
| PubMed citations | 3,028 | 924 unique | 99.9% |
| Alternative products | 221 | 464 | 7.3% |
| General annotation | 3,028 | 17,705 | 99.9% |
| Function | 2,211 | 2,235 | 72.9% |
| Catalytic activity | 1,025 | 1,096 | 33.8% |
| Subcellular location | 2,062 | 3,255 | 68% |
| Sequence annotation | 2,802 | 22,211 | 92.4% |
| Amino acid modifications | 603 | 1,842 | 19.9% |
| Natural Variant | 7 | 22 | 0.2% |
| Cross-references | 3,031 | 75,097 | 100% |
| EMBL | 3,030 | 11,544 | 100% |
| InterPro | 2,964 | 9,840 | 97.8% |
| PDB | 41 | 90 | 1.4% |
| RefSeq | 2,629 | 2,683 | 86.7% |
100% of reviewed Oryza sativa subsp. japonica entries are annotated with at least one keyword .
98.2% of reviewed Oryza sativa subsp. japonica entries are annotated with at least one GO (Gene Ontology ) term.
Oryza sativa subsp. indica (Rice) - 622 reviewed entries.
Number of canonical and isoform protein sequences: 631 (download data in FASTA format)
| Evidence for the existence of protein | Percentage of entries |
|---|---|
| at protein level | 8% |
| at transcript level | 82.2% |
| inferred from homology | 9.3% |
| predicted | 0.3% |
| uncertain | 0.2% |
| Annotation categories | Entries with | Number of annotations | Coverage |
|---|---|---|---|
| PubMed citations | 617 | 189 unique | 99.2% |
| Alternative products | 6 | 15 | 1% |
| General annotation | 622 | 3,314 | 100% |
| Function | 494 | 502 | 79.4% |
| Catalytic activity | 184 | 200 | 29.6% |
| Subcellular location | 503 | 776 | 80.9% |
| Sequence annotation | 564 | 3,992 | 90.7% |
| Amino acid modifications | 93 | 275 | 15% |
| Natural Variant | 5 | 8 | 0.8% |
| Cross-references | 622 | 9,516 | 100% |
| EMBL | 622 | 1,051 | 100% |
| InterPro | 596 | 1,778 | 95.8% |
| PDB | 0 | 0 | N/A |
| RefSeq | 59 | 66 | 9.5% |
98.1% of reviewed Oryza sativa subsp. indica entries are annotated with at least one keyword .
97.4% of reviewed Oryza sativa subsp. indica entries are annotated with at least one GO (Gene Ontology ) term.