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ProgramPlant protein annotation program

Statistics

UniProt release 2014_04 - Apr-16, 2014 contains a total of 544,996 reviewed entries, which includes 35,044 entries from 1,978 species of Viridiplantae.

Arabidospis thaliana - 12,788 reviewed entries.

Number of canonical and isoform protein sequences: 14,423 (download data in FASTA format)

Evidence for the existence of protein Percentage of entries
at protein level 35.1%
at transcript level 50.9%
inferred from homology 9.7%
predicted 3.4%
uncertain 0.9%

Annotation categories Entries with Number of annotations Coverage
PubMed citations 12,766 9,136 unique 99.8%
Alternative products 2,518 4,156 19.7%
General annotation 12,776 80,688 99.9%
Function 8,392 8,452 65.6%
Catalytic activity 3,387 3,734 26.5%
Subcellular location 9,337 14,937 73%
Sequence annotation 12,221 107,502 95.6%
Amino acid modifications 3,716 13,240 29.1%
Natural Variant 129 839 1%
Cross-references 12,788 410,981 100%
EMBL 12,759 61,274 99.8%
InterPro 12,115 37,172 94.7%
PDB 372 810 2.9%
RefSeq 12,662 15,521 99%
TAIR 12,741 12,797 99.6%

100% of reviewed Arabidopsis thaliana entries are annotated with at least one keyword .

91.9% of reviewed Arabidopsis thaliana entries are annotated with at least one GO (Gene Ontology ) term.

Oryza sativa subsp. japonica (Rice) - 3,166 reviewed entries.

Number of canonical and isoform protein sequences: 3,413 (download data in FASTA format)

Evidence for the existence of protein Percentage of entries
at protein level 11.3%
at transcript level 69.9%
inferred from homology 17.9%
predicted 0.5%
uncertain 0.4%

Annotation categories Entries with Number of annotations Coverage
PubMed citations 3,163 959 unique 99.9%
Alternative products 225 472 7.1%
General annotation 3,163 18,661 99.9%
Function 2,335 2,359 73.8%
Catalytic activity 1,080 1,159 34.1%
Subcellular location 2,175 3,423 68.7%
Sequence annotation 2,933 23,286 92.6%
Amino acid modifications 612 1,855 19.3%
Natural Variant 7 22 0.2%
Cross-references 3,166 74,172 100%
EMBL 3,165 12,081 100%
InterPro 3,097 10,583 97.8%
PDB 41 97 1.3%
RefSeq 2,749 2,803 86.8%

100% of reviewed Oryza sativa subsp. japonica entries are annotated with at least one keyword .

98% of reviewed Oryza sativa subsp. japonica entries are annotated with at least one GO (Gene Ontology ) term.

Oryza sativa subsp. indica (Rice) - 668 reviewed entries.

Number of canonical and isoform protein sequences: 677 (download data in FASTA format)

Evidence for the existence of protein Percentage of entries
at protein level 8.5%
at transcript level 29.9%
inferred from homology 59.7%
predicted 1.6%
uncertain 0.1%

Annotation categories Entries with Number of annotations Coverage
PubMed citations 663 194 unique 99.3%
Alternative products 6 15 0.9%
General annotation 668 3,562 100%
Function 539 547 80.7%
Catalytic activity 196 212 29.3%
Subcellular location 540 823 80.8%
Sequence annotation 610 4,260 91.3%
Amino acid modifications 98 280 14.7%
Natural Variant 5 8 0.7%
Cross-references 668 9,673 100%
EMBL 668 1,107 100%
InterPro 642 1,935 96.1%
PDB 1 1 0.1%
RefSeq 59 66 8.8%

98.2% of reviewed Oryza sativa subsp. indica entries are annotated with at least one keyword .

97.2% of reviewed Oryza sativa subsp. indica entries are annotated with at least one GO (Gene Ontology ) term.