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ProgramPlant protein annotation program

Statistics

UniProt release 2015_01 - Jan-07, 2015 contains a total of 547,357 reviewed entries, which includes 36,021 entries from 1,984 species of Viridiplantae.

Arabidospis thaliana - 13,530 reviewed entries.

Number of canonical and isoform protein sequences: 15,318 (download data in FASTA format)

Evidence for the existence of protein Percentage of entries
at protein level 36.4%
at transcript level 49.7%
inferred from homology 11.4%
predicted 1.6%
uncertain 0.8%

Annotation categories Entries with Number of annotations Coverage
PubMed citations 13,508 9,914 unique 99.8%
Alternative products 2,678 4,469 19.8%
General annotation 13,520 86,448 99.9%
Function 9,035 9,103 66.8%
Catalytic activity 3,567 3,937 26.4%
Subcellular location 9,910 15,972 73.2%
Sequence annotation 12,940 114,195 95.6%
Amino acid modifications 3,863 13,710 28.6%
Natural Variant 128 819 0.9%
Cross-references 13,530 503,342 100%
EMBL 13,500 64,822 99.8%
InterPro 12,869 39,908 95.1%
PDB 397 876 2.9%
RefSeq 13,373 16,460 98.8%
TAIR 13,457 13,513 99.5%

100% of reviewed Arabidopsis thaliana entries are annotated with at least one keyword .

91.9% of reviewed Arabidopsis thaliana entries are annotated with at least one GO (Gene Ontology ) term.

Oryza sativa subsp. japonica (Rice) - 3,297 reviewed entries.

Number of canonical and isoform protein sequences: 3,549 (download data in FASTA format)

Evidence for the existence of protein Percentage of entries
at protein level 11.7%
at transcript level 69.5%
inferred from homology 18.4%
predicted N/A
uncertain 0.4%

Annotation categories Entries with Number of annotations Coverage
PubMed citations 3,295 1,028 unique 99.9%
Alternative products 230 482 7%
General annotation 3,294 19,572 99.9%
Function 2,468 2,492 74.9%
Catalytic activity 1,147 1,235 34.8%
Subcellular location 2,274 3,563 69%
Sequence annotation 3,059 24,209 92.8%
Amino acid modifications 631 1,886 19.1%
Natural Variant 7 22 0.2%
Cross-references 3,297 97,245 100%
EMBL 3,297 12,682 100%
InterPro 3,236 11,119 98.1%
PDB 44 102 1.3%
RefSeq 2,875 2,931 87.2%

100% of reviewed Oryza sativa subsp. japonica entries are annotated with at least one keyword .

98% of reviewed Oryza sativa subsp. japonica entries are annotated with at least one GO (Gene Ontology ) term.

Oryza sativa subsp. indica (Rice) - 690 reviewed entries.

Number of canonical and isoform protein sequences: 699 (download data in FASTA format)

Evidence for the existence of protein Percentage of entries
at protein level 8.3%
at transcript level 29.4%
inferred from homology 62.2%
predicted N/A
uncertain 0.1%

Annotation categories Entries with Number of annotations Coverage
PubMed citations 685 199 unique 99.3%
Alternative products 6 15 0.9%
General annotation 690 3,674 100%
Function 564 572 81.7%
Catalytic activity 198 214 28.7%
Subcellular location 557 845 80.7%
Sequence annotation 631 4,376 91.4%
Amino acid modifications 99 283 14.3%
Natural Variant 5 8 0.7%
Cross-references 690 13,861 100%
EMBL 690 1,138 100%
InterPro 661 2,046 95.8%
PDB 1 1 0.1%
RefSeq 59 66 8.6%

99.9% of reviewed Oryza sativa subsp. indica entries are annotated with at least one keyword .

97.8% of reviewed Oryza sativa subsp. indica entries are annotated with at least one GO (Gene Ontology ) term.

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