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Plant protein annotation project

Statistics

UniProt release 2017_07 - Jul-05, 2017 contains a total of 555,100 reviewed entries, which includes 38,933 entries from 2,013 species of Viridiplantae.

Arabidospis thaliana - 15,423 reviewed entries.

Number of canonical and isoform protein sequences: 20,990 (download data in FASTA format)

Evidence for the existence of protein Percentage of entries
at protein level 40%
at transcript level 45.7%
inferred from homology 10.4%
predicted 3.2%
uncertain 0.7%

Annotation categories Entries with Number of annotations Coverage
PubMed citations 15,423 12,518 unique 100%
Alternative products 3,078 6,411 20%
General annotation 14,855 69,517 96.3%
Function 10,692 10,803 69.3%
Catalytic activity 4,188 4,621 27.2%
Subcellular location 0 0 N/A
Sequence annotation 14,831 133,536 96.2%
Amino acid modifications 4,730 16,598 30.7%
Natural Variant 127 814 0.8%
Cross-references 15,423 595,184 100%
EMBL 15,393 76,030 99.8%
InterPro 14,686 45,483 95.2%
PDB 520 1,186 3.4%
RefSeq 15,245 21,395 98.8%
TAIR 14,202 14,257 92.1%

100% of reviewed Arabidopsis thaliana entries are annotated with at least one keyword .

95.6% of reviewed Arabidopsis thaliana entries are annotated with at least one GO (Gene Ontology ) term.

Oryza sativa subsp. japonica (Rice) - 3,827 reviewed entries.

Number of canonical and isoform protein sequences: 5,338 (download data in FASTA format)

Evidence for the existence of protein Percentage of entries
at protein level 16.1%
at transcript level 66.1%
inferred from homology 17.1%
predicted 0.3%
uncertain 0.4%

Annotation categories Entries with Number of annotations Coverage
PubMed citations 3,827 1,489 unique 100%
Alternative products 280 587 7.3%
General annotation 3,753 16,253 98.1%
Function 2,968 2,998 77.6%
Catalytic activity 1,317 1,436 34.4%
Subcellular location 0 0 N/A
Sequence annotation 3,595 29,133 93.9%
Amino acid modifications 779 2,430 20.4%
Natural Variant 8 23 0.2%
Cross-references 3,827 121,820 100%
EMBL 3,827 20,167 100%
InterPro 3,760 13,030 98.2%
PDB 56 130 1.5%
RefSeq 3,317 3,977 86.7%

100% of reviewed Oryza sativa subsp. japonica entries are annotated with at least one keyword .

98.6% of reviewed Oryza sativa subsp. japonica entries are annotated with at least one GO (Gene Ontology ) term.

Oryza sativa subsp. indica (Rice) - 810 reviewed entries.

Number of canonical and isoform protein sequences: 857 (download data in FASTA format)

Evidence for the existence of protein Percentage of entries
at protein level 8.6%
at transcript level 27.4%
inferred from homology 62.5%
predicted 1.4%
uncertain 0.1%

Annotation categories Entries with Number of annotations Coverage
PubMed citations 810 236 unique 100%
Alternative products 7 17 0.9%
General annotation 805 2,869 99.4%
Function 682 693 84.2%
Catalytic activity 238 267 29.4%
Subcellular location 0 0 N/A
Sequence annotation 750 5,507 92.6%
Amino acid modifications 147 439 18.1%
Natural Variant 5 8 0.6%
Cross-references 810 15,313 100%
EMBL 810 1,345 100%
InterPro 777 2,489 95.9%
PDB 2 2 0.2%
RefSeq 71 130 8.8%

99.9% of reviewed Oryza sativa subsp. indica entries are annotated with at least one keyword .

98.8% of reviewed Oryza sativa subsp. indica entries are annotated with at least one GO (Gene Ontology ) term.