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Plant protein annotation project

Statistics

UniProt release 2016_06 - Jun-08, 2016 contains a total of 551,385 reviewed entries, which includes 37,671 entries from 1,995 species of Viridiplantae.

Arabidospis thaliana - 14,697 reviewed entries.

Number of canonical and isoform protein sequences: 16,709 (download data in FASTA format)

Evidence for the existence of protein Percentage of entries
at protein level 38.3%
at transcript level 48.2%
inferred from homology 11.2%
predicted 1.5%
uncertain 0.8%

Annotation categories Entries with Number of annotations Coverage
PubMed citations 14,675 11,475 unique 99.9%
Alternative products 2,933 4,948 20%
General annotation 14,625 75,848 99.5%
Function 10,051 10,143 68.4%
Catalytic activity 3,819 4,215 26%
Subcellular location 0 0 N/A
Sequence annotation 14,109 126,087 96%
Amino acid modifications 4,452 15,641 30.3%
Natural Variant 127 814 0.9%
Cross-references 14,697 607,402 100%
EMBL 14,667 70,290 99.8%
InterPro 13,989 43,584 95.2%
PDB 460 1,016 3.1%
RefSeq 14,529 17,897 98.9%
TAIR 14,625 14,681 99.5%

100% of reviewed Arabidopsis thaliana entries are annotated with at least one keyword .

92.8% of reviewed Arabidopsis thaliana entries are annotated with at least one GO (Gene Ontology ) term.

Oryza sativa subsp. japonica (Rice) - 3,502 reviewed entries.

Number of canonical and isoform protein sequences: 3,766 (download data in FASTA format)

Evidence for the existence of protein Percentage of entries
at protein level 12.9%
at transcript level 68.6%
inferred from homology 18.1%
predicted N/A
uncertain 0.4%

Annotation categories Entries with Number of annotations Coverage
PubMed citations 3,502 1,164 unique 100%
Alternative products 244 508 7%
General annotation 3,497 16,655 99.9%
Function 2,673 2,703 76.3%
Catalytic activity 1,188 1,291 33.9%
Subcellular location 0 0 N/A
Sequence annotation 3,263 26,267 93.2%
Amino acid modifications 701 2,122 20%
Natural Variant 7 22 0.2%
Cross-references 3,502 120,052 100%
EMBL 3,502 18,346 100%
InterPro 3,435 11,778 98.1%
PDB 53 125 1.5%
RefSeq 3,041 3,635 86.8%

100% of reviewed Oryza sativa subsp. japonica entries are annotated with at least one keyword .

98.3% of reviewed Oryza sativa subsp. japonica entries are annotated with at least one GO (Gene Ontology ) term.

Oryza sativa subsp. indica (Rice) - 780 reviewed entries.

Number of canonical and isoform protein sequences: 789 (download data in FASTA format)

Evidence for the existence of protein Percentage of entries
at protein level 8.1%
at transcript level 27.7%
inferred from homology 64.1%
predicted N/A
uncertain 0.1%

Annotation categories Entries with Number of annotations Coverage
PubMed citations 775 217 unique 99.4%
Alternative products 6 15 0.8%
General annotation 780 3,163 100%
Function 656 664 84.1%
Catalytic activity 222 251 28.5%
Subcellular location 0 0 N/A
Sequence annotation 721 5,260 92.4%
Amino acid modifications 143 410 18.3%
Natural Variant 5 8 0.6%
Cross-references 780 16,549 100%
EMBL 780 1,290 100%
InterPro 745 2,344 95.5%
PDB 2 2 0.3%
RefSeq 71 130 9.1%

99.9% of reviewed Oryza sativa subsp. indica entries are annotated with at least one keyword .

98.5% of reviewed Oryza sativa subsp. indica entries are annotated with at least one GO (Gene Ontology ) term.