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ProgramPlant protein annotation program

Statistics

UniProt release 2015_05 - Apr-29, 2015 contains a total of 548,454 reviewed entries, which includes 36,480 entries from 1,986 species of Viridiplantae.

Arabidospis thaliana - 13,888 reviewed entries.

Number of canonical and isoform protein sequences: 15,739 (download data in FASTA format)

Evidence for the existence of protein Percentage of entries
at protein level 36.8%
at transcript level 49.5%
inferred from homology 11.3%
predicted 1.6%
uncertain 0.8%

Annotation categories Entries with Number of annotations Coverage
PubMed citations 13,866 10,341 unique 99.8%
Alternative products 2,752 4,606 19.8%
General annotation 13,818 70,679 99.5%
Function 9,361 9,432 67.4%
Catalytic activity 3,639 4,013 26.2%
Subcellular location 0 0 N/A
Sequence annotation 13,297 117,328 95.7%
Amino acid modifications 3,998 14,268 28.8%
Natural Variant 128 819 0.9%
Cross-references 13,888 534,169 100%
EMBL 13,858 66,539 99.8%
InterPro 13,195 40,762 95%
PDB 412 907 3%
RefSeq 13,729 16,896 98.9%
TAIR 13,815 13,871 99.5%

100% of reviewed Arabidopsis thaliana entries are annotated with at least one keyword .

92.2% of reviewed Arabidopsis thaliana entries are annotated with at least one GO (Gene Ontology ) term.

Oryza sativa subsp. japonica (Rice) - 3,339 reviewed entries.

Number of canonical and isoform protein sequences: 3,594 (download data in FASTA format)

Evidence for the existence of protein Percentage of entries
at protein level 12.2%
at transcript level 69.1%
inferred from homology 18.3%
predicted N/A
uncertain 0.4%

Annotation categories Entries with Number of annotations Coverage
PubMed citations 3,337 1,066 unique 99.9%
Alternative products 234 489 7%
General annotation 3,335 15,582 99.9%
Function 2,507 2,531 75.1%
Catalytic activity 1,166 1,267 34.9%
Subcellular location 0 0 N/A
Sequence annotation 3,105 24,676 93%
Amino acid modifications 635 1,927 19%
Natural Variant 7 22 0.2%
Cross-references 3,339 98,797 100%
EMBL 3,339 12,885 100%
InterPro 3,271 11,191 98%
PDB 45 103 1.3%
RefSeq 2,918 2,975 87.4%

100% of reviewed Oryza sativa subsp. japonica entries are annotated with at least one keyword .

98% of reviewed Oryza sativa subsp. japonica entries are annotated with at least one GO (Gene Ontology ) term.

Oryza sativa subsp. indica (Rice) - 709 reviewed entries.

Number of canonical and isoform protein sequences: 718 (download data in FASTA format)

Evidence for the existence of protein Percentage of entries
at protein level 8%
at transcript level 27.9%
inferred from homology 63.9%
predicted N/A
uncertain 0.1%

Annotation categories Entries with Number of annotations Coverage
PubMed citations 704 202 unique 99.3%
Alternative products 6 15 0.8%
General annotation 709 2,806 100%
Function 584 592 82.4%
Catalytic activity 207 236 29.2%
Subcellular location 0 0 N/A
Sequence annotation 650 4,562 91.7%
Amino acid modifications 101 289 14.2%
Natural Variant 5 8 0.7%
Cross-references 709 14,688 100%
EMBL 709 1,164 100%
InterPro 680 2,095 95.9%
PDB 1 1 0.1%
RefSeq 59 66 8.3%

99.9% of reviewed Oryza sativa subsp. indica entries are annotated with at least one keyword .

97.7% of reviewed Oryza sativa subsp. indica entries are annotated with at least one GO (Gene Ontology ) term.