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Plant protein annotation project

Statistics

UniProt release 2016_01 - Jan-20, 2016 contains a total of 550,299 reviewed entries, which includes 37,284 entries from 1,989 species of Viridiplantae.

Arabidospis thaliana - 14,430 reviewed entries.

Number of canonical and isoform protein sequences: 16,391 (download data in FASTA format)

Evidence for the existence of protein Percentage of entries
at protein level 37.7%
at transcript level 48.6%
inferred from homology 11.3%
predicted 1.5%
uncertain 0.8%

Annotation categories Entries with Number of annotations Coverage
PubMed citations 14,408 11,035 unique 99.8%
Alternative products 2,878 4,842 19.9%
General annotation 14,358 74,102 99.5%
Function 9,796 9,880 67.9%
Catalytic activity 3,767 4,158 26.1%
Subcellular location 0 0 N/A
Sequence annotation 13,842 123,290 95.9%
Amino acid modifications 4,378 15,358 30.3%
Natural Variant 127 814 0.9%
Cross-references 14,430 584,914 100%
EMBL 14,400 68,931 99.8%
InterPro 13,726 43,090 95.1%
PDB 438 969 3%
RefSeq 14,259 17,564 98.8%
TAIR 14,358 14,414 99.5%

100% of reviewed Arabidopsis thaliana entries are annotated with at least one keyword .

92.6% of reviewed Arabidopsis thaliana entries are annotated with at least one GO (Gene Ontology ) term.

Oryza sativa subsp. japonica (Rice) - 3,453 reviewed entries.

Number of canonical and isoform protein sequences: 3,714 (download data in FASTA format)

Evidence for the existence of protein Percentage of entries
at protein level 12.6%
at transcript level 68.7%
inferred from homology 18.3%
predicted N/A
uncertain 0.4%

Annotation categories Entries with Number of annotations Coverage
PubMed citations 3,451 1,123 unique 99.9%
Alternative products 241 502 7%
General annotation 3,449 16,349 99.9%
Function 2,623 2,653 76%
Catalytic activity 1,179 1,282 34.1%
Subcellular location 0 0 N/A
Sequence annotation 3,221 25,733 93.3%
Amino acid modifications 685 2,011 19.8%
Natural Variant 7 22 0.2%
Cross-references 3,453 113,623 100%
EMBL 3,453 13,494 100%
InterPro 3,388 11,631 98.1%
PDB 50 115 1.4%
RefSeq 3,029 3,088 87.7%

100% of reviewed Oryza sativa subsp. japonica entries are annotated with at least one keyword .

98.1% of reviewed Oryza sativa subsp. japonica entries are annotated with at least one GO (Gene Ontology ) term.

Oryza sativa subsp. indica (Rice) - 771 reviewed entries.

Number of canonical and isoform protein sequences: 780 (download data in FASTA format)

Evidence for the existence of protein Percentage of entries
at protein level 7.4%
at transcript level 27.9%
inferred from homology 64.6%
predicted N/A
uncertain 0.1%

Annotation categories Entries with Number of annotations Coverage
PubMed citations 766 207 unique 99.4%
Alternative products 6 15 0.8%
General annotation 771 3,103 100%
Function 647 655 83.9%
Catalytic activity 217 246 28.1%
Subcellular location 0 0 N/A
Sequence annotation 712 4,960 92.3%
Amino acid modifications 137 356 17.8%
Natural Variant 5 8 0.6%
Cross-references 771 16,967 100%
EMBL 771 1,246 100%
InterPro 738 2,312 95.7%
PDB 1 1 0.1%
RefSeq 72 131 9.3%

99.9% of reviewed Oryza sativa subsp. indica entries are annotated with at least one keyword .

98.7% of reviewed Oryza sativa subsp. indica entries are annotated with at least one GO (Gene Ontology ) term.