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ProgramPlant protein annotation program

Statistics

UniProt release 2015_03 - Mar-04, 2015 contains a total of 547,964 reviewed entries, which includes 36,305 entries from 1,985 species of Viridiplantae.

Arabidospis thaliana - 13,738 reviewed entries.

Number of canonical and isoform protein sequences: 15,560 (download data in FASTA format)

Evidence for the existence of protein Percentage of entries
at protein level 36.8%
at transcript level 49.5%
inferred from homology 11.4%
predicted 1.6%
uncertain 0.8%

Annotation categories Entries with Number of annotations Coverage
PubMed citations 13,716 10,105 unique 99.8%
Alternative products 2,717 4,542 19.8%
General annotation 13,667 69,661 99.5%
Function 9,221 9,292 67.1%
Catalytic activity 3,607 3,979 26.3%
Subcellular location 0 0 N/A
Sequence annotation 13,152 116,087 95.7%
Amino acid modifications 3,989 14,124 29%
Natural Variant 128 819 0.9%
Cross-references 13,738 0 100%
EMBL 13,708 0 99.8%
InterPro 13,060 0 95.1%
PDB 409 0 3%
RefSeq 13,580 0 98.8%
TAIR 13,665 0 99.5%

100% of reviewed Arabidopsis thaliana entries are annotated with at least one keyword .

92% of reviewed Arabidopsis thaliana entries are annotated with at least one GO (Gene Ontology ) term.

Oryza sativa subsp. japonica (Rice) - 3,332 reviewed entries.

Number of canonical and isoform protein sequences: 3,586 (download data in FASTA format)

Evidence for the existence of protein Percentage of entries
at protein level 12.1%
at transcript level 69.2%
inferred from homology 18.3%
predicted N/A
uncertain 0.4%

Annotation categories Entries with Number of annotations Coverage
PubMed citations 3,330 1,057 unique 99.9%
Alternative products 232 486 7%
General annotation 3,328 15,554 99.9%
Function 2,500 2,524 75%
Catalytic activity 1,166 1,267 35%
Subcellular location 0 0 N/A
Sequence annotation 3,094 24,572 92.9%
Amino acid modifications 633 1,924 19%
Natural Variant 7 22 0.2%
Cross-references 3,332 0 100%
EMBL 3,332 0 100%
InterPro 3,263 0 97.9%
PDB 44 0 1.3%
RefSeq 2,906 0 87.2%

100% of reviewed Oryza sativa subsp. japonica entries are annotated with at least one keyword .

97.7% of reviewed Oryza sativa subsp. japonica entries are annotated with at least one GO (Gene Ontology ) term.

Oryza sativa subsp. indica (Rice) - 702 reviewed entries.

Number of canonical and isoform protein sequences: 711 (download data in FASTA format)

Evidence for the existence of protein Percentage of entries
at protein level 8.1%
at transcript level 27.9%
inferred from homology 63.8%
predicted N/A
uncertain 0.1%

Annotation categories Entries with Number of annotations Coverage
PubMed citations 697 200 unique 99.3%
Alternative products 6 15 0.9%
General annotation 702 2,782 100%
Function 577 585 82.2%
Catalytic activity 207 236 29.5%
Subcellular location 0 0 N/A
Sequence annotation 643 4,518 91.6%
Amino acid modifications 99 286 14.1%
Natural Variant 5 8 0.7%
Cross-references 702 0 100%
EMBL 702 0 100%
InterPro 673 0 95.9%
PDB 1 0 0.1%
RefSeq 59 0 8.4%

99.9% of reviewed Oryza sativa subsp. indica entries are annotated with at least one keyword .

97.9% of reviewed Oryza sativa subsp. indica entries are annotated with at least one GO (Gene Ontology ) term.