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Plant protein annotation project

Statistics

UniProt release 2017_06 - Jun-07, 2017 contains a total of 554,860 reviewed entries, which includes 38,851 entries from 2,013 species of Viridiplantae.

Arabidospis thaliana - 15,383 reviewed entries.

Number of canonical and isoform protein sequences: 17,500 (download data in FASTA format)

Evidence for the existence of protein Percentage of entries
at protein level 39.9%
at transcript level 45.8%
inferred from homology 10.4%
predicted 3.2%
uncertain 0.7%

Annotation categories Entries with Number of annotations Coverage
PubMed citations 15,383 12,468 unique 100%
Alternative products 3,063 5,183 19.9%
General annotation 14,815 69,279 96.3%
Function 10,653 10,764 69.3%
Catalytic activity 4,188 4,620 27.2%
Subcellular location 0 0 N/A
Sequence annotation 14,789 133,097 96.1%
Amino acid modifications 4,726 16,561 30.7%
Natural Variant 127 814 0.8%
Cross-references 15,383 592,140 100%
EMBL 15,353 75,794 99.8%
InterPro 14,651 45,340 95.2%
PDB 514 1,174 3.3%
RefSeq 15,205 21,341 98.8%
TAIR 14,164 14,219 92.1%

100% of reviewed Arabidopsis thaliana entries are annotated with at least one keyword .

95.6% of reviewed Arabidopsis thaliana entries are annotated with at least one GO (Gene Ontology ) term.

Oryza sativa subsp. japonica (Rice) - 3,800 reviewed entries.

Number of canonical and isoform protein sequences: 4,101 (download data in FASTA format)

Evidence for the existence of protein Percentage of entries
at protein level 15.8%
at transcript level 66.3%
inferred from homology 17.2%
predicted 0.3%
uncertain 0.4%

Annotation categories Entries with Number of annotations Coverage
PubMed citations 3,800 1,446 unique 100%
Alternative products 279 580 7.3%
General annotation 3,726 16,080 98.1%
Function 2,942 2,972 77.4%
Catalytic activity 1,301 1,408 34.2%
Subcellular location 0 0 N/A
Sequence annotation 3,568 28,889 93.9%
Amino acid modifications 772 2,387 20.3%
Natural Variant 7 22 0.2%
Cross-references 3,800 120,839 100%
EMBL 3,800 20,009 100%
InterPro 3,731 12,904 98.2%
PDB 56 130 1.5%
RefSeq 3,287 3,936 86.5%

100% of reviewed Oryza sativa subsp. japonica entries are annotated with at least one keyword .

98.6% of reviewed Oryza sativa subsp. japonica entries are annotated with at least one GO (Gene Ontology ) term.

Oryza sativa subsp. indica (Rice) - 809 reviewed entries.

Number of canonical and isoform protein sequences: 819 (download data in FASTA format)

Evidence for the existence of protein Percentage of entries
at protein level 8.5%
at transcript level 27.4%
inferred from homology 62.5%
predicted 1.4%
uncertain 0.1%

Annotation categories Entries with Number of annotations Coverage
PubMed citations 809 235 unique 100%
Alternative products 7 17 0.9%
General annotation 804 2,863 99.4%
Function 681 692 84.2%
Catalytic activity 238 267 29.4%
Subcellular location 0 0 N/A
Sequence annotation 749 5,498 92.6%
Amino acid modifications 147 439 18.2%
Natural Variant 5 8 0.6%
Cross-references 809 15,370 100%
EMBL 809 1,343 100%
InterPro 776 2,482 95.9%
PDB 2 2 0.2%
RefSeq 71 130 8.8%

99.9% of reviewed Oryza sativa subsp. indica entries are annotated with at least one keyword .

98.8% of reviewed Oryza sativa subsp. indica entries are annotated with at least one GO (Gene Ontology ) term.