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ProgramPlant protein annotation program

Statistics

UniProt release 2014_08 - Sep-03, 2014 contains a total of 546,238 reviewed entries, which includes 35,503 entries from 1,978 species of Viridiplantae.

Arabidospis thaliana - 13,100 reviewed entries.

Number of canonical and isoform protein sequences: 14,811 (download data in FASTA format)

Evidence for the existence of protein Percentage of entries
at protein level 35.6%
at transcript level 50.3%
inferred from homology 9.7%
predicted 3.5%
uncertain 0.8%

Annotation categories Entries with Number of annotations Coverage
PubMed citations 13,078 9,476 unique 99.8%
Alternative products 2,587 4,301 19.7%
General annotation 13,089 83,232 99.9%
Function 8,670 8,737 66.2%
Catalytic activity 3,496 3,860 26.7%
Subcellular location 9,575 15,350 73.1%
Sequence annotation 12,527 110,483 95.6%
Amino acid modifications 3,799 13,507 29%
Natural Variant 129 839 1%
Cross-references 13,100 413,946 100%
EMBL 13,071 62,884 99.8%
InterPro 12,454 38,764 95.1%
PDB 379 830 2.9%
RefSeq 12,961 15,926 98.9%
TAIR 13,043 13,099 99.6%

100% of reviewed Arabidopsis thaliana entries are annotated with at least one keyword .

91.7% of reviewed Arabidopsis thaliana entries are annotated with at least one GO (Gene Ontology ) term.

Oryza sativa subsp. japonica (Rice) - 3,261 reviewed entries.

Number of canonical and isoform protein sequences: 3,511 (download data in FASTA format)

Evidence for the existence of protein Percentage of entries
at protein level 11.7%
at transcript level 69.4%
inferred from homology 18%
predicted 0.5%
uncertain 0.4%

Annotation categories Entries with Number of annotations Coverage
PubMed citations 3,259 997 unique 99.9%
Alternative products 228 478 7%
General annotation 3,258 19,289 99.9%
Function 2,431 2,455 74.5%
Catalytic activity 1,134 1,219 34.8%
Subcellular location 2,238 3,510 68.6%
Sequence annotation 3,026 23,860 92.8%
Amino acid modifications 626 1,873 19.2%
Natural Variant 7 22 0.2%
Cross-references 3,261 74,937 100%
EMBL 3,261 12,538 100%
InterPro 3,198 11,014 98.1%
PDB 42 100 1.3%
RefSeq 2,831 2,885 86.8%

100% of reviewed Oryza sativa subsp. japonica entries are annotated with at least one keyword .

98% of reviewed Oryza sativa subsp. japonica entries are annotated with at least one GO (Gene Ontology ) term.

Oryza sativa subsp. indica (Rice) - 680 reviewed entries.

Number of canonical and isoform protein sequences: 689 (download data in FASTA format)

Evidence for the existence of protein Percentage of entries
at protein level 8.7%
at transcript level 29.6%
inferred from homology 60%
predicted 1.6%
uncertain 0.1%

Annotation categories Entries with Number of annotations Coverage
PubMed citations 675 197 unique 99.3%
Alternative products 6 15 0.9%
General annotation 680 3,613 100%
Function 551 559 81%
Catalytic activity 197 213 29%
Subcellular location 547 832 80.4%
Sequence annotation 622 4,302 91.5%
Amino acid modifications 98 280 14.4%
Natural Variant 5 8 0.7%
Cross-references 680 9,901 100%
EMBL 680 1,125 100%
InterPro 651 2,009 95.7%
PDB 1 1 0.1%
RefSeq 59 66 8.7%

98.2% of reviewed Oryza sativa subsp. indica entries are annotated with at least one keyword .

97.6% of reviewed Oryza sativa subsp. indica entries are annotated with at least one GO (Gene Ontology ) term.

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