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Plant protein annotation project

Statistics

UniProt release 2017_02 - Feb-15, 2017 contains a total of 553,655 reviewed entries, which includes 38,457 entries from 2,006 species of Viridiplantae.

Arabidospis thaliana - 15,136 reviewed entries.

Number of canonical and isoform protein sequences: 17,222 (download data in FASTA format)

Evidence for the existence of protein Percentage of entries
at protein level 39.5%
at transcript level 47%
inferred from homology 9.6%
predicted 3.1%
uncertain 0.7%

Annotation categories Entries with Number of annotations Coverage
PubMed citations 15,136 12,127 unique 100%
Alternative products 3,027 5,116 20%
General annotation 14,575 68,153 96.3%
Function 10,460 10,568 69.1%
Catalytic activity 4,150 4,561 27.4%
Subcellular location 0 0 N/A
Sequence annotation 14,541 130,648 96.1%
Amino acid modifications 4,650 16,274 30.7%
Natural Variant 127 814 0.8%
Cross-references 15,136 585,048 100%
EMBL 15,106 72,334 99.8%
InterPro 14,386 45,235 95%
PDB 494 1,115 3.3%
RefSeq 14,971 21,012 98.9%
TAIR 13,936 13,990 92.1%

100% of reviewed Arabidopsis thaliana entries are annotated with at least one keyword .

95.6% of reviewed Arabidopsis thaliana entries are annotated with at least one GO (Gene Ontology ) term.

Oryza sativa subsp. japonica (Rice) - 3,741 reviewed entries.

Number of canonical and isoform protein sequences: 4,032 (download data in FASTA format)

Evidence for the existence of protein Percentage of entries
at protein level 15.1%
at transcript level 66.8%
inferred from homology 17.4%
predicted 0.3%
uncertain 0.4%

Annotation categories Entries with Number of annotations Coverage
PubMed citations 3,741 1,388 unique 100%
Alternative products 270 561 7.2%
General annotation 3,667 15,711 98%
Function 2,881 2,911 77%
Catalytic activity 1,282 1,387 34.3%
Subcellular location 0 0 N/A
Sequence annotation 3,501 28,318 93.6%
Amino acid modifications 753 2,314 20.1%
Natural Variant 7 22 0.2%
Cross-references 3,741 117,849 100%
EMBL 3,741 19,646 100%
InterPro 3,667 12,857 98%
PDB 56 129 1.5%
RefSeq 3,238 3,874 86.6%

100% of reviewed Oryza sativa subsp. japonica entries are annotated with at least one keyword .

98.6% of reviewed Oryza sativa subsp. japonica entries are annotated with at least one GO (Gene Ontology ) term.

Oryza sativa subsp. indica (Rice) - 806 reviewed entries.

Number of canonical and isoform protein sequences: 816 (download data in FASTA format)

Evidence for the existence of protein Percentage of entries
at protein level 8.6%
at transcript level 27.5%
inferred from homology 62.4%
predicted 1.4%
uncertain 0.1%

Annotation categories Entries with Number of annotations Coverage
PubMed citations 806 235 unique 100%
Alternative products 7 17 0.9%
General annotation 801 2,842 99.4%
Function 678 689 84.1%
Catalytic activity 237 266 29.4%
Subcellular location 0 0 N/A
Sequence annotation 748 5,485 92.8%
Amino acid modifications 147 439 18.2%
Natural Variant 5 8 0.6%
Cross-references 806 15,060 100%
EMBL 806 1,340 100%
InterPro 769 2,483 95.4%
PDB 2 2 0.2%
RefSeq 71 130 8.8%

99.9% of reviewed Oryza sativa subsp. indica entries are annotated with at least one keyword .

98.6% of reviewed Oryza sativa subsp. indica entries are annotated with at least one GO (Gene Ontology ) term.