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Plant protein annotation project

Statistics

UniProt release 2016_11 - Nov-30, 2016 contains a total of 553,231 reviewed entries, which includes 38,327 entries from 2,001 species of Viridiplantae.

Arabidospis thaliana - 15,075 reviewed entries.

Number of canonical and isoform protein sequences: 17,149 (download data in FASTA format)

Evidence for the existence of protein Percentage of entries
at protein level 39.3%
at transcript level 47.2%
inferred from homology 11.3%
predicted 1.5%
uncertain 0.7%

Annotation categories Entries with Number of annotations Coverage
PubMed citations 15,075 13,439 unique 100%
Alternative products 3,013 5,090 20%
General annotation 15,003 78,218 99.5%
Function 10,388 10,495 68.9%
Catalytic activity 3,999 4,400 26.5%
Subcellular location 0 0 N/A
Sequence annotation 14,480 129,831 96.1%
Amino acid modifications 4,646 16,254 30.8%
Natural Variant 127 814 0.8%
Cross-references 15,075 0 100%
EMBL 15,045 0 99.8%
InterPro 14,328 0 95%
PDB 482 0 3.2%
RefSeq 14,558 0 96.6%
TAIR 15,002 0 99.5%

100% of reviewed Arabidopsis thaliana entries are annotated with at least one keyword .

94.4% of reviewed Arabidopsis thaliana entries are annotated with at least one GO (Gene Ontology ) term.

Oryza sativa subsp. japonica (Rice) - 3,696 reviewed entries.

Number of canonical and isoform protein sequences: 3,982 (download data in FASTA format)

Evidence for the existence of protein Percentage of entries
at protein level 14.7%
at transcript level 67%
inferred from homology 17.9%
predicted N/A
uncertain 0.4%

Annotation categories Entries with Number of annotations Coverage
PubMed citations 3,696 1,769 unique 100%
Alternative products 265 551 7.2%
General annotation 3,691 17,945 99.9%
Function 2,850 2,880 77.1%
Catalytic activity 1,251 1,356 33.8%
Subcellular location 0 0 N/A
Sequence annotation 3,456 27,831 93.5%
Amino acid modifications 746 2,228 20.2%
Natural Variant 7 22 0.2%
Cross-references 3,696 0 100%
EMBL 3,696 0 100%
InterPro 3,623 0 98%
PDB 55 0 1.5%
RefSeq 3,205 0 86.7%

100% of reviewed Oryza sativa subsp. japonica entries are annotated with at least one keyword .

98.4% of reviewed Oryza sativa subsp. japonica entries are annotated with at least one GO (Gene Ontology ) term.

Oryza sativa subsp. indica (Rice) - 802 reviewed entries.

Number of canonical and isoform protein sequences: 812 (download data in FASTA format)

Evidence for the existence of protein Percentage of entries
at protein level 8.5%
at transcript level 27.6%
inferred from homology 63.8%
predicted N/A
uncertain 0.1%

Annotation categories Entries with Number of annotations Coverage
PubMed citations 802 345 unique 100%
Alternative products 7 17 0.9%
General annotation 802 3,281 100%
Function 675 686 84.2%
Catalytic activity 234 263 29.2%
Subcellular location 0 0 N/A
Sequence annotation 744 5,437 92.8%
Amino acid modifications 145 433 18.1%
Natural Variant 5 8 0.6%
Cross-references 802 0 100%
EMBL 802 0 100%
InterPro 765 0 95.4%
PDB 2 0 0.2%
RefSeq 71 0 8.9%

99.9% of reviewed Oryza sativa subsp. indica entries are annotated with at least one keyword .

98.4% of reviewed Oryza sativa subsp. indica entries are annotated with at least one GO (Gene Ontology ) term.