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Plant protein annotation project

Statistics

UniProt release 2017_03 - Mar-15, 2017 contains a total of 553,941 reviewed entries, which includes 38,527 entries from 2,006 species of Viridiplantae.

Arabidospis thaliana - 15,169 reviewed entries.

Number of canonical and isoform protein sequences: 17,262 (download data in FASTA format)

Evidence for the existence of protein Percentage of entries
at protein level 39.6%
at transcript level 46.3%
inferred from homology 10.2%
predicted 3.2%
uncertain 0.7%

Annotation categories Entries with Number of annotations Coverage
PubMed citations 15,169 12,213 unique 100%
Alternative products 3,034 5,130 20%
General annotation 14,609 68,398 96.3%
Function 10,494 10,602 69.2%
Catalytic activity 4,161 4,581 27.4%
Subcellular location 0 0 N/A
Sequence annotation 14,572 131,144 96.1%
Amino acid modifications 4,664 16,324 30.7%
Natural Variant 127 814 0.8%
Cross-references 15,169 587,181 100%
EMBL 15,139 72,754 99.8%
InterPro 14,417 45,396 95%
PDB 498 1,131 3.3%
RefSeq 15,004 21,051 98.9%
TAIR 13,948 14,002 92%

100% of reviewed Arabidopsis thaliana entries are annotated with at least one keyword .

95.4% of reviewed Arabidopsis thaliana entries are annotated with at least one GO (Gene Ontology ) term.

Oryza sativa subsp. japonica (Rice) - 3,753 reviewed entries.

Number of canonical and isoform protein sequences: 4,046 (download data in FASTA format)

Evidence for the existence of protein Percentage of entries
at protein level 15.1%
at transcript level 66.9%
inferred from homology 17.3%
predicted 0.3%
uncertain 0.4%

Annotation categories Entries with Number of annotations Coverage
PubMed citations 3,753 1,394 unique 100%
Alternative products 272 565 7.2%
General annotation 3,679 15,782 98%
Function 2,893 2,923 77.1%
Catalytic activity 1,284 1,389 34.2%
Subcellular location 0 0 N/A
Sequence annotation 3,511 28,467 93.6%
Amino acid modifications 762 2,362 20.3%
Natural Variant 7 22 0.2%
Cross-references 3,753 120,141 100%
EMBL 3,753 19,707 100%
InterPro 3,679 12,945 98%
PDB 56 129 1.5%
RefSeq 3,247 3,884 86.5%

100% of reviewed Oryza sativa subsp. japonica entries are annotated with at least one keyword .

98.6% of reviewed Oryza sativa subsp. japonica entries are annotated with at least one GO (Gene Ontology ) term.

Oryza sativa subsp. indica (Rice) - 808 reviewed entries.

Number of canonical and isoform protein sequences: 818 (download data in FASTA format)

Evidence for the existence of protein Percentage of entries
at protein level 8.5%
at transcript level 27.5%
inferred from homology 62.5%
predicted 1.4%
uncertain 0.1%

Annotation categories Entries with Number of annotations Coverage
PubMed citations 808 235 unique 100%
Alternative products 7 17 0.9%
General annotation 803 2,853 99.4%
Function 680 691 84.2%
Catalytic activity 238 267 29.5%
Subcellular location 0 0 N/A
Sequence annotation 748 5,488 92.6%
Amino acid modifications 147 439 18.2%
Natural Variant 5 8 0.6%
Cross-references 808 15,506 100%
EMBL 808 1,342 100%
InterPro 771 2,490 95.4%
PDB 2 2 0.2%
RefSeq 71 130 8.8%

99.9% of reviewed Oryza sativa subsp. indica entries are annotated with at least one keyword .

98.6% of reviewed Oryza sativa subsp. indica entries are annotated with at least one GO (Gene Ontology ) term.