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  1. ProgramPlant protein annotation program

    Statistics

    UniProt release 2014_09 - Oct-01, 2014 contains a total of 546,439 reviewed entries, which includes 35,612 entries from 1,981 species of Viridiplantae.

    Arabidospis thaliana - 13,199 reviewed entries.

    Number of canonical and isoform protein sequences: 14,927 (download data in FASTA format)

    Evidence for the existence of protein Percentage of entries
    at protein level 35.6%
    at transcript level 50.3%
    inferred from homology 11.6%
    predicted 1.6%
    uncertain 0.8%

    Annotation categories Entries with Number of annotations Coverage
    PubMed citations 13,177 9,539 unique 99.8%
    Alternative products 2,602 4,333 19.7%
    General annotation 13,188 83,908 99.9%
    Function 8,740 8,807 66.2%
    Catalytic activity 3,502 3,866 26.5%
    Subcellular location 9,635 15,491 73%
    Sequence annotation 12,631 111,322 95.7%
    Amino acid modifications 3,811 13,523 28.9%
    Natural Variant 129 839 1%
    Cross-references 13,199 486,063 100%
    EMBL 13,170 63,314 99.8%
    InterPro 12,549 38,939 95.1%
    PDB 380 831 2.9%
    RefSeq 13,056 16,046 98.9%
    TAIR 13,138 13,194 99.5%

    100% of reviewed Arabidopsis thaliana entries are annotated with at least one keyword .

    91.6% of reviewed Arabidopsis thaliana entries are annotated with at least one GO (Gene Ontology ) term.

    Oryza sativa subsp. japonica (Rice) - 3,266 reviewed entries.

    Number of canonical and isoform protein sequences: 3,516 (download data in FASTA format)

    Evidence for the existence of protein Percentage of entries
    at protein level 11.7%
    at transcript level 69.4%
    inferred from homology 18.4%
    predicted 0%
    uncertain 0.4%

    Annotation categories Entries with Number of annotations Coverage
    PubMed citations 3,264 1,000 unique 99.9%
    Alternative products 228 478 7%
    General annotation 3,263 19,326 99.9%
    Function 2,439 2,463 74.7%
    Catalytic activity 1,135 1,220 34.8%
    Subcellular location 2,242 3,515 68.6%
    Sequence annotation 3,031 23,891 92.8%
    Amino acid modifications 626 1,873 19.2%
    Natural Variant 7 22 0.2%
    Cross-references 3,266 90,896 100%
    EMBL 3,266 12,557 100%
    InterPro 3,203 11,022 98.1%
    PDB 42 100 1.3%
    RefSeq 2,835 2,889 86.8%

    100% of reviewed Oryza sativa subsp. japonica entries are annotated with at least one keyword .

    98.1% of reviewed Oryza sativa subsp. japonica entries are annotated with at least one GO (Gene Ontology ) term.

    Oryza sativa subsp. indica (Rice) - 680 reviewed entries.

    Number of canonical and isoform protein sequences: 689 (download data in FASTA format)

    Evidence for the existence of protein Percentage of entries
    at protein level 8.7%
    at transcript level 29.6%
    inferred from homology 61.6%
    predicted N/A
    uncertain 0.1%

    Annotation categories Entries with Number of annotations Coverage
    PubMed citations 675 198 unique 99.3%
    Alternative products 6 15 0.9%
    General annotation 680 3,616 100%
    Function 554 562 81.5%
    Catalytic activity 197 213 29%
    Subcellular location 547 832 80.4%
    Sequence annotation 622 4,302 91.5%
    Amino acid modifications 98 280 14.4%
    Natural Variant 5 8 0.7%
    Cross-references 680 13,382 100%
    EMBL 680 1,125 100%
    InterPro 651 2,009 95.7%
    PDB 1 1 0.1%
    RefSeq 59 66 8.7%

    98.2% of reviewed Oryza sativa subsp. indica entries are annotated with at least one keyword .

    97.6% of reviewed Oryza sativa subsp. indica entries are annotated with at least one GO (Gene Ontology ) term.