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ProgramPlant protein annotation program

Statistics

UniProt release 2014_10 - Oct-29, 2014 contains a total of 546,790 reviewed entries, which includes 35,737 entries from 1,984 species of Viridiplantae.

Arabidospis thaliana - 13,297 reviewed entries.

Number of canonical and isoform protein sequences: 15,039 (download data in FASTA format)

Evidence for the existence of protein Percentage of entries
at protein level 35.8%
at transcript level 50.2%
inferred from homology 11.6%
predicted 1.6%
uncertain 0.8%

Annotation categories Entries with Number of annotations Coverage
PubMed citations 13,275 9,685 unique 99.8%
Alternative products 2,621 4,366 19.7%
General annotation 13,286 84,701 99.9%
Function 8,837 8,905 66.5%
Catalytic activity 3,526 3,895 26.5%
Subcellular location 9,713 15,610 73%
Sequence annotation 12,721 112,023 95.7%
Amino acid modifications 3,837 13,637 28.9%
Natural Variant 129 839 1%
Cross-references 13,297 489,807 100%
EMBL 13,268 63,742 99.8%
InterPro 12,646 39,084 95.1%
PDB 387 850 2.9%
RefSeq 13,154 16,168 98.9%
TAIR 13,236 13,292 99.5%

100% of reviewed Arabidopsis thaliana entries are annotated with at least one keyword .

91.9% of reviewed Arabidopsis thaliana entries are annotated with at least one GO (Gene Ontology ) term.

Oryza sativa subsp. japonica (Rice) - 3,277 reviewed entries.

Number of canonical and isoform protein sequences: 3,527 (download data in FASTA format)

Evidence for the existence of protein Percentage of entries
at protein level 11.9%
at transcript level 69.3%
inferred from homology 18.4%
predicted 0%
uncertain 0.4%

Annotation categories Entries with Number of annotations Coverage
PubMed citations 3,275 1,012 unique 99.9%
Alternative products 228 478 7%
General annotation 3,274 19,427 99.9%
Function 2,448 2,472 74.7%
Catalytic activity 1,142 1,230 34.8%
Subcellular location 2,253 3,534 68.8%
Sequence annotation 3,042 23,984 92.8%
Amino acid modifications 626 1,873 19.1%
Natural Variant 7 22 0.2%
Cross-references 3,277 95,543 100%
EMBL 3,277 12,592 100%
InterPro 3,216 11,074 98.1%
PDB 44 102 1.3%
RefSeq 2,856 2,912 87.2%

100% of reviewed Oryza sativa subsp. japonica entries are annotated with at least one keyword .

98% of reviewed Oryza sativa subsp. japonica entries are annotated with at least one GO (Gene Ontology ) term.

Oryza sativa subsp. indica (Rice) - 682 reviewed entries.

Number of canonical and isoform protein sequences: 691 (download data in FASTA format)

Evidence for the existence of protein Percentage of entries
at protein level 8.7%
at transcript level 29.5%
inferred from homology 61.7%
predicted N/A
uncertain 0.1%

Annotation categories Entries with Number of annotations Coverage
PubMed citations 677 199 unique 99.3%
Alternative products 6 15 0.9%
General annotation 682 3,623 100%
Function 556 564 81.5%
Catalytic activity 197 213 28.9%
Subcellular location 549 834 80.5%
Sequence annotation 624 4,314 91.5%
Amino acid modifications 99 281 14.5%
Natural Variant 5 8 0.7%
Cross-references 682 13,291 100%
EMBL 682 1,127 100%
InterPro 653 2,021 95.7%
PDB 1 1 0.1%
RefSeq 59 66 8.7%

98.2% of reviewed Oryza sativa subsp. indica entries are annotated with at least one keyword .

97.8% of reviewed Oryza sativa subsp. indica entries are annotated with at least one GO (Gene Ontology ) term.

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