Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.

Plant protein annotation project

Statistics

UniProt release 2017_05 - May-10, 2017 contains a total of 554,515 reviewed entries, which includes 38,739 entries from 2,011 species of Viridiplantae.

Arabidospis thaliana - 15,333 reviewed entries.

Number of canonical and isoform protein sequences: 17,445 (download data in FASTA format)

Evidence for the existence of protein Percentage of entries
at protein level 39.7%
at transcript level 45.9%
inferred from homology 10.4%
predicted 3.2%
uncertain 0.7%

Annotation categories Entries with Number of annotations Coverage
PubMed citations 15,333 12,396 unique 100%
Alternative products 3,057 5,172 19.9%
General annotation 14,767 69,008 96.3%
Function 10,620 10,730 69.3%
Catalytic activity 4,177 4,607 27.2%
Subcellular location 0 0 N/A
Sequence annotation 14,741 132,596 96.1%
Amino acid modifications 4,718 16,521 30.8%
Natural Variant 127 814 0.8%
Cross-references 15,333 590,102 100%
EMBL 15,303 75,551 99.8%
InterPro 14,598 45,090 95.2%
PDB 510 1,166 3.3%
RefSeq 15,149 21,259 98.8%
TAIR 14,114 14,169 92%

100% of reviewed Arabidopsis thaliana entries are annotated with at least one keyword .

95.5% of reviewed Arabidopsis thaliana entries are annotated with at least one GO (Gene Ontology ) term.

Oryza sativa subsp. japonica (Rice) - 3,772 reviewed entries.

Number of canonical and isoform protein sequences: 4,067 (download data in FASTA format)

Evidence for the existence of protein Percentage of entries
at protein level 15.2%
at transcript level 66.8%
inferred from homology 17.3%
predicted 0.3%
uncertain 0.4%

Annotation categories Entries with Number of annotations Coverage
PubMed citations 3,772 1,413 unique 100%
Alternative products 274 569 7.3%
General annotation 3,698 15,890 98%
Function 2,911 2,941 77.2%
Catalytic activity 1,288 1,394 34.1%
Subcellular location 0 0 N/A
Sequence annotation 3,540 28,676 93.8%
Amino acid modifications 770 2,385 20.4%
Natural Variant 7 22 0.2%
Cross-references 3,772 119,929 100%
EMBL 3,772 19,815 100%
InterPro 3,703 12,813 98.2%
PDB 56 130 1.5%
RefSeq 3,265 3,909 86.6%

100% of reviewed Oryza sativa subsp. japonica entries are annotated with at least one keyword .

98.6% of reviewed Oryza sativa subsp. japonica entries are annotated with at least one GO (Gene Ontology ) term.

Oryza sativa subsp. indica (Rice) - 809 reviewed entries.

Number of canonical and isoform protein sequences: 819 (download data in FASTA format)

Evidence for the existence of protein Percentage of entries
at protein level 8.5%
at transcript level 27.4%
inferred from homology 62.5%
predicted 1.4%
uncertain 0.1%

Annotation categories Entries with Number of annotations Coverage
PubMed citations 809 235 unique 100%
Alternative products 7 17 0.9%
General annotation 804 2,863 99.4%
Function 681 692 84.2%
Catalytic activity 238 267 29.4%
Subcellular location 0 0 N/A
Sequence annotation 749 5,496 92.6%
Amino acid modifications 147 439 18.2%
Natural Variant 5 8 0.6%
Cross-references 809 15,359 100%
EMBL 809 1,343 100%
InterPro 776 2,480 95.9%
PDB 2 2 0.2%
RefSeq 71 130 8.8%

99.9% of reviewed Oryza sativa subsp. indica entries are annotated with at least one keyword .

98.8% of reviewed Oryza sativa subsp. indica entries are annotated with at least one GO (Gene Ontology ) term.