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ProgramPlant protein annotation program

Statistics

UniProt release 2014_11 - Nov-26, 2014 contains a total of 547,085 reviewed entries, which includes 35,875 entries from 1,984 species of Viridiplantae.

Arabidospis thaliana - 13,414 reviewed entries.

Number of canonical and isoform protein sequences: 15,187 (download data in FASTA format)

Evidence for the existence of protein Percentage of entries
at protein level 36.3%
at transcript level 49.9%
inferred from homology 11.5%
predicted 1.6%
uncertain 0.8%

Annotation categories Entries with Number of annotations Coverage
PubMed citations 13,392 9,800 unique 99.8%
Alternative products 2,651 4,427 19.8%
General annotation 13,404 85,658 99.9%
Function 8,929 8,997 66.6%
Catalytic activity 3,551 3,921 26.5%
Subcellular location 9,819 15,820 73.2%
Sequence annotation 12,839 113,542 95.7%
Amino acid modifications 3,845 13,676 28.7%
Natural Variant 128 819 1%
Cross-references 13,414 498,873 100%
EMBL 13,384 64,262 99.8%
InterPro 12,758 39,399 95.1%
PDB 392 864 2.9%
RefSeq 13,263 16,306 98.9%
TAIR 13,346 13,402 99.5%

100% of reviewed Arabidopsis thaliana entries are annotated with at least one keyword .

91.8% of reviewed Arabidopsis thaliana entries are annotated with at least one GO (Gene Ontology ) term.

Oryza sativa subsp. japonica (Rice) - 3,283 reviewed entries.

Number of canonical and isoform protein sequences: 3,533 (download data in FASTA format)

Evidence for the existence of protein Percentage of entries
at protein level 11.6%
at transcript level 69.6%
inferred from homology 18.4%
predicted 0%
uncertain 0.4%

Annotation categories Entries with Number of annotations Coverage
PubMed citations 3,281 1,018 unique 99.9%
Alternative products 228 478 6.9%
General annotation 3,280 19,470 99.9%
Function 2,454 2,478 74.7%
Catalytic activity 1,142 1,230 34.8%
Subcellular location 2,260 3,544 68.8%
Sequence annotation 3,048 24,135 92.8%
Amino acid modifications 629 1,882 19.2%
Natural Variant 7 22 0.2%
Cross-references 3,283 96,916 100%
EMBL 3,283 12,617 100%
InterPro 3,222 11,092 98.1%
PDB 44 102 1.3%
RefSeq 2,863 2,919 87.2%

100% of reviewed Oryza sativa subsp. japonica entries are annotated with at least one keyword .

98% of reviewed Oryza sativa subsp. japonica entries are annotated with at least one GO (Gene Ontology ) term.

Oryza sativa subsp. indica (Rice) - 685 reviewed entries.

Number of canonical and isoform protein sequences: 694 (download data in FASTA format)

Evidence for the existence of protein Percentage of entries
at protein level 8.3%
at transcript level 29.6%
inferred from homology 61.9%
predicted N/A
uncertain 0.1%

Annotation categories Entries with Number of annotations Coverage
PubMed citations 680 199 unique 99.3%
Alternative products 6 15 0.9%
General annotation 685 3,643 100%
Function 559 567 81.6%
Catalytic activity 197 213 28.8%
Subcellular location 552 838 80.6%
Sequence annotation 627 4,353 91.5%
Amino acid modifications 98 280 14.3%
Natural Variant 5 8 0.7%
Cross-references 685 13,350 100%
EMBL 685 1,132 100%
InterPro 656 2,033 95.8%
PDB 1 1 0.1%
RefSeq 59 66 8.6%

98.2% of reviewed Oryza sativa subsp. indica entries are annotated with at least one keyword .

97.8% of reviewed Oryza sativa subsp. indica entries are annotated with at least one GO (Gene Ontology ) term.

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