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ProgramPlant protein annotation program

Statistics

UniProt release 2013_06 - May-29, 2013 contains a total of 540,261 reviewed entries, which includes 33,903 entries from 1,966 species of Viridiplantae.

Arabidospis thaliana - 12,069 reviewed entries.

Number of canonical and isoform protein sequences: 13,566 (download data in FASTA format)

Evidence for the existence of protein Percentage of entries
at protein level 34.1%
at transcript level 53.1%
inferred from homology 8.6%
predicted 3.4%
uncertain 0.9%

Annotation categories Entries with Number of annotations Coverage
PubMed citations 12,046 8,257 unique 99.8%
Alternative products 2,336 3,836 19.4%
General annotation 12,058 74,652 99.9%
Function 7,657 7,710 63.4%
Catalytic activity 3,226 3,547 26.7%
Subcellular location 8,740 13,852 72.4%
Sequence annotation 11,508 100,747 95.4%
Amino acid modifications 3,181 12,257 26.4%
Natural Variant 129 839 1.1%
Cross-references 12,069 395,079 100%
EMBL 12,042 57,798 99.8%
InterPro 11,400 35,077 94.5%
PDB 333 709 2.8%
RefSeq 11,954 14,619 99%
TAIR 12,033 12,086 99.7%

100% of reviewed Arabidopsis thaliana entries are annotated with at least one keyword .

91.6% of reviewed Arabidopsis thaliana entries are annotated with at least one GO (Gene Ontology ) term.

Oryza sativa subsp. japonica (Rice) - 3,038 reviewed entries.

Number of canonical and isoform protein sequences: 3,281 (download data in FASTA format)

Evidence for the existence of protein Percentage of entries
at protein level 10.9%
at transcript level 82.7%
inferred from homology 5.7%
predicted 0.2%
uncertain 0.4%

Annotation categories Entries with Number of annotations Coverage
PubMed citations 3,035 928 unique 99.9%
Alternative products 221 464 7.3%
General annotation 3,035 17,762 99.9%
Function 2,217 2,241 73%
Catalytic activity 1,026 1,097 33.8%
Subcellular location 2,069 3,268 68.1%
Sequence annotation 2,811 22,329 92.5%
Amino acid modifications 603 1,842 19.8%
Natural Variant 7 22 0.2%
Cross-references 3,038 75,082 100%
EMBL 3,037 11,569 100%
InterPro 2,970 10,059 97.8%
PDB 41 90 1.3%
RefSeq 2,635 2,689 86.7%

100% of reviewed Oryza sativa subsp. japonica entries are annotated with at least one keyword .

98.1% of reviewed Oryza sativa subsp. japonica entries are annotated with at least one GO (Gene Ontology ) term.

Oryza sativa subsp. indica (Rice) - 623 reviewed entries.

Number of canonical and isoform protein sequences: 632 (download data in FASTA format)

Evidence for the existence of protein Percentage of entries
at protein level 8.2%
at transcript level 82%
inferred from homology 9.3%
predicted 0.3%
uncertain 0.2%

Annotation categories Entries with Number of annotations Coverage
PubMed citations 618 191 unique 99.2%
Alternative products 6 15 1%
General annotation 623 3,321 100%
Function 495 503 79.5%
Catalytic activity 185 201 29.7%
Subcellular location 504 777 80.9%
Sequence annotation 565 4,004 90.7%
Amino acid modifications 93 275 14.9%
Natural Variant 5 8 0.8%
Cross-references 623 9,583 100%
EMBL 623 1,053 100%
InterPro 597 1,812 95.8%
PDB 0 0 N/A
RefSeq 59 66 9.5%

98.1% of reviewed Oryza sativa subsp. indica entries are annotated with at least one keyword .

97.3% of reviewed Oryza sativa subsp. indica entries are annotated with at least one GO (Gene Ontology ) term.