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ProgramPlant protein annotation program

Statistics

UniProt release 2015_04 - Apr-01, 2015 contains a total of 548,208 reviewed entries, which includes 36,397 entries from 1,985 species of Viridiplantae.

Arabidospis thaliana - 13,822 reviewed entries.

Number of canonical and isoform protein sequences: 15,657 (download data in FASTA format)

Evidence for the existence of protein Percentage of entries
at protein level 36.9%
at transcript level 49.3%
inferred from homology 11.3%
predicted 1.6%
uncertain 0.8%

Annotation categories Entries with Number of annotations Coverage
PubMed citations 13,800 10,222 unique 99.8%
Alternative products 2,736 4,574 19.8%
General annotation 13,752 70,189 99.5%
Function 9,292 9,363 67.2%
Catalytic activity 3,627 4,000 26.2%
Subcellular location 0 0 N/A
Sequence annotation 13,235 116,769 95.8%
Amino acid modifications 3,994 14,159 28.9%
Natural Variant 128 819 0.9%
Cross-references 13,822 516,756 100%
EMBL 13,792 66,205 99.8%
InterPro 13,132 40,582 95%
PDB 410 899 3%
RefSeq 13,662 16,815 98.8%
TAIR 13,749 13,805 99.5%

100% of reviewed Arabidopsis thaliana entries are annotated with at least one keyword .

92% of reviewed Arabidopsis thaliana entries are annotated with at least one GO (Gene Ontology ) term.

Oryza sativa subsp. japonica (Rice) - 3,334 reviewed entries.

Number of canonical and isoform protein sequences: 3,588 (download data in FASTA format)

Evidence for the existence of protein Percentage of entries
at protein level 12.1%
at transcript level 69.2%
inferred from homology 18.3%
predicted N/A
uncertain 0.4%

Annotation categories Entries with Number of annotations Coverage
PubMed citations 3,332 1,058 unique 99.9%
Alternative products 232 486 7%
General annotation 3,330 15,555 99.9%
Function 2,501 2,525 75%
Catalytic activity 1,166 1,267 35%
Subcellular location 0 0 N/A
Sequence annotation 3,096 24,600 92.9%
Amino acid modifications 633 1,924 19%
Natural Variant 7 22 0.2%
Cross-references 3,334 98,499 100%
EMBL 3,334 12,859 100%
InterPro 3,265 11,177 97.9%
PDB 44 102 1.3%
RefSeq 2,914 2,971 87.4%

100% of reviewed Oryza sativa subsp. japonica entries are annotated with at least one keyword .

97.9% of reviewed Oryza sativa subsp. japonica entries are annotated with at least one GO (Gene Ontology ) term.

Oryza sativa subsp. indica (Rice) - 704 reviewed entries.

Number of canonical and isoform protein sequences: 713 (download data in FASTA format)

Evidence for the existence of protein Percentage of entries
at protein level 8.1%
at transcript level 27.8%
inferred from homology 63.9%
predicted N/A
uncertain 0.1%

Annotation categories Entries with Number of annotations Coverage
PubMed citations 699 200 unique 99.3%
Alternative products 6 15 0.9%
General annotation 704 2,787 100%
Function 578 586 82.1%
Catalytic activity 207 236 29.4%
Subcellular location 0 0 N/A
Sequence annotation 645 4,528 91.6%
Amino acid modifications 99 286 14.1%
Natural Variant 5 8 0.7%
Cross-references 704 14,560 100%
EMBL 704 1,155 100%
InterPro 675 2,080 95.9%
PDB 1 1 0.1%
RefSeq 59 66 8.4%

99.9% of reviewed Oryza sativa subsp. indica entries are annotated with at least one keyword .

97.9% of reviewed Oryza sativa subsp. indica entries are annotated with at least one GO (Gene Ontology ) term.