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Plant protein annotation project

Statistics

UniProt release 2018_04 - Apr-25, 2018 contains a total of 557,275 reviewed entries, which includes 39,454 entries from 1,999 species of Viridiplantae.

Arabidospis thaliana - 15,719 reviewed entries.

Number of canonical and isoform protein sequences: 17,904 (download data in FASTA format)

Evidence for the existence of protein Percentage of entries
at protein level 42.5%
at transcript level 43.5%
inferred from homology 10.3%
predicted 3.1%
uncertain 0.7%

Annotation categories Entries with Number of annotations Coverage
PubMed citations 15,719 12,866 unique 100%
Alternative products 3,117 8,476 19.8%
General annotation 15,143 71,006 96.3%
Function 10,934 11,052 69.6%
Catalytic activity 4,262 4,716 27.1%
Subcellular location 11,799 uniprot:(organism:3702 reviewed:yes) N/A
Sequence annotation 15,120 139,442 96.2%
Amino acid modifications 4,926 18,540 31.3%
Natural Variant 128 815 0.8%
Cross-references 15,719 293,181 N/A
EMBL 15,689 0 99.8%
InterPro 14,960 0 95.2%
PDB 579 1,306 3.7%
RefSeq 15,397 21,445 98%
TAIR 14,481 14,536 92.1%

100% of reviewed Arabidopsis thaliana entries are annotated with at least one keyword .

95.7% of reviewed Arabidopsis thaliana entries are annotated with at least one GO (Gene Ontology ) term.

Oryza sativa subsp. japonica (Rice) - 3,927 reviewed entries.

Number of canonical and isoform protein sequences: 4,235 (download data in FASTA format)

Evidence for the existence of protein Percentage of entries
at protein level 17%
at transcript level 65.5%
inferred from homology 16.8%
predicted 0.3%
uncertain 0.4%

Annotation categories Entries with Number of annotations Coverage
PubMed citations 3,927 1,618 unique 100%
Alternative products 285 745 7.3%
General annotation 3,853 16,839 98.1%
Function 3,078 3,109 78.4%
Catalytic activity 1,351 1,478 34.4%
Subcellular location 2,779 5,529 70.8%
Sequence annotation 3,695 30,360 94.1%
Amino acid modifications 787 2,503 20%
Natural Variant 8 23 0.2%
Cross-references 3,927 57,361 N/A
EMBL 3,927 0 100%
InterPro 3,860 0 98.3%
PDB 67 162 1.7%
RefSeq 3,410 4,093 86.8%

100% of reviewed Oryza sativa subsp. japonica entries are annotated with at least one keyword .

98.8% of reviewed Oryza sativa subsp. japonica entries are annotated with at least one GO (Gene Ontology ) term.

Oryza sativa subsp. indica (Rice) - 816 reviewed entries.

Number of canonical and isoform protein sequences: 826 (download data in FASTA format)

Evidence for the existence of protein Percentage of entries
at protein level 8.7%
at transcript level 27.1%
inferred from homology 62.7%
predicted 1.3%
uncertain 0.1%

Annotation categories Entries with Number of annotations Coverage
PubMed citations 816 239 unique 100%
Alternative products 7 19 0.9%
General annotation 811 2,910 99.4%
Function 689 700 84.4%
Catalytic activity 243 275 29.8%
Subcellular location 649 uniprot:(organism:39946 reviewed:yes) 79.5%
Sequence annotation 756 5,660 92.6%
Amino acid modifications 149 445 18.3%
Natural Variant 5 8 0.6%
Cross-references 816 8,740 N/A
EMBL 816 0 100%
InterPro 783 0 96%
PDB 4 4 0.5%
RefSeq 71 130 8.7%

99.9% of reviewed Oryza sativa subsp. indica entries are annotated with at least one keyword .

98.9% of reviewed Oryza sativa subsp. indica entries are annotated with at least one GO (Gene Ontology ) term.

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Main funding by: National Institutes of Health