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ProgramPlant protein annotation program

Statistics

UniProt release 2014_07 - Jul-09, 2014 contains a total of 546,000 reviewed entries, which includes 35,380 entries from 1,977 species of Viridiplantae.

Arabidospis thaliana - 13,037 reviewed entries.

Number of canonical and isoform protein sequences: 14,742 (download data in FASTA format)

Evidence for the existence of protein Percentage of entries
at protein level 35.5%
at transcript level 50.4%
inferred from homology 9.7%
predicted 3.6%
uncertain 0.8%

Annotation categories Entries with Number of annotations Coverage
PubMed citations 13,015 9,406 unique 99.8%
Alternative products 2,576 4,284 19.8%
General annotation 13,026 82,724 99.9%
Function 8,616 8,682 66.1%
Catalytic activity 3,469 3,826 26.6%
Subcellular location 9,532 15,278 73.1%
Sequence annotation 12,466 109,813 95.6%
Amino acid modifications 3,776 13,424 29%
Natural Variant 129 839 1%
Cross-references 13,037 409,963 100%
EMBL 13,008 62,603 99.8%
InterPro 12,404 38,596 95.1%
PDB 377 827 2.9%
RefSeq 12,898 15,814 98.9%
TAIR 12,981 13,037 99.6%

100% of reviewed Arabidopsis thaliana entries are annotated with at least one keyword .

91.7% of reviewed Arabidopsis thaliana entries are annotated with at least one GO (Gene Ontology ) term.

Oryza sativa subsp. japonica (Rice) - 3,227 reviewed entries.

Number of canonical and isoform protein sequences: 3,475 (download data in FASTA format)

Evidence for the existence of protein Percentage of entries
at protein level 11.5%
at transcript level 69.6%
inferred from homology 18.1%
predicted 0.5%
uncertain 0.4%

Annotation categories Entries with Number of annotations Coverage
PubMed citations 3,224 975 unique 99.9%
Alternative products 226 474 7%
General annotation 3,224 19,029 99.9%
Function 2,397 2,421 74.3%
Catalytic activity 1,119 1,200 34.7%
Subcellular location 2,210 3,466 68.5%
Sequence annotation 2,991 23,537 92.7%
Amino acid modifications 621 1,864 19.2%
Natural Variant 7 22 0.2%
Cross-references 3,227 73,653 100%
EMBL 3,226 12,308 100%
InterPro 3,166 10,927 98.1%
PDB 41 97 1.3%
RefSeq 2,803 2,857 86.9%

100% of reviewed Oryza sativa subsp. japonica entries are annotated with at least one keyword .

98.1% of reviewed Oryza sativa subsp. japonica entries are annotated with at least one GO (Gene Ontology ) term.

Oryza sativa subsp. indica (Rice) - 679 reviewed entries.

Number of canonical and isoform protein sequences: 688 (download data in FASTA format)

Evidence for the existence of protein Percentage of entries
at protein level 8.7%
at transcript level 29.5%
inferred from homology 60.1%
predicted 1.6%
uncertain 0.1%

Annotation categories Entries with Number of annotations Coverage
PubMed citations 674 195 unique 99.3%
Alternative products 6 15 0.9%
General annotation 679 3,603 100%
Function 550 558 81%
Catalytic activity 196 212 28.9%
Subcellular location 546 830 80.4%
Sequence annotation 621 4,287 91.5%
Amino acid modifications 98 280 14.4%
Natural Variant 5 8 0.7%
Cross-references 679 9,878 100%
EMBL 679 1,122 100%
InterPro 650 2,003 95.7%
PDB 1 1 0.1%
RefSeq 59 66 8.7%

98.2% of reviewed Oryza sativa subsp. indica entries are annotated with at least one keyword .

97.6% of reviewed Oryza sativa subsp. indica entries are annotated with at least one GO (Gene Ontology ) term.