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Plant protein annotation project

Statistics

UniProt release 2016_07 - Jul-06, 2016 contains a total of 551,705 reviewed entries, which includes 37,748 entries from 1,996 species of Viridiplantae.

Arabidospis thaliana - 14,754 reviewed entries.

Number of canonical and isoform protein sequences: 16,784 (download data in FASTA format)

Evidence for the existence of protein Percentage of entries
at protein level 38.4%
at transcript level 48.1%
inferred from homology 11.2%
predicted 1.5%
uncertain 0.8%

Annotation categories Entries with Number of annotations Coverage
PubMed citations 14,732 11,569 unique 99.9%
Alternative products 2,955 4,988 20%
General annotation 14,682 76,297 99.5%
Function 10,122 10,223 68.6%
Catalytic activity 3,837 4,235 26%
Subcellular location 0 0 N/A
Sequence annotation 14,168 126,855 96%
Amino acid modifications 4,518 15,842 30.6%
Natural Variant 127 814 0.9%
Cross-references 14,754 611,788 100%
EMBL 14,724 70,579 99.8%
InterPro 14,044 43,851 95.2%
PDB 462 1,021 3.1%
RefSeq 14,585 17,959 98.9%
TAIR 14,682 14,738 99.5%

100% of reviewed Arabidopsis thaliana entries are annotated with at least one keyword .

94.1% of reviewed Arabidopsis thaliana entries are annotated with at least one GO (Gene Ontology ) term.

Oryza sativa subsp. japonica (Rice) - 3,517 reviewed entries.

Number of canonical and isoform protein sequences: 3,783 (download data in FASTA format)

Evidence for the existence of protein Percentage of entries
at protein level 13.1%
at transcript level 68.5%
inferred from homology 18.1%
predicted N/A
uncertain 0.4%

Annotation categories Entries with Number of annotations Coverage
PubMed citations 3,517 1,177 unique 100%
Alternative products 246 512 7%
General annotation 3,512 16,759 99.9%
Function 2,684 2,714 76.3%
Catalytic activity 1,188 1,291 33.8%
Subcellular location 0 0 N/A
Sequence annotation 3,279 26,350 93.2%
Amino acid modifications 701 2,122 19.9%
Natural Variant 7 22 0.2%
Cross-references 3,517 120,483 100%
EMBL 3,517 18,429 100%
InterPro 3,451 11,866 98.1%
PDB 53 125 1.5%
RefSeq 3,050 3,646 86.7%

100% of reviewed Oryza sativa subsp. japonica entries are annotated with at least one keyword .

98.4% of reviewed Oryza sativa subsp. japonica entries are annotated with at least one GO (Gene Ontology ) term.

Oryza sativa subsp. indica (Rice) - 783 reviewed entries.

Number of canonical and isoform protein sequences: 792 (download data in FASTA format)

Evidence for the existence of protein Percentage of entries
at protein level 8%
at transcript level 27.6%
inferred from homology 64.2%
predicted N/A
uncertain 0.1%

Annotation categories Entries with Number of annotations Coverage
PubMed citations 778 217 unique 99.4%
Alternative products 6 15 0.8%
General annotation 783 3,169 100%
Function 659 667 84.2%
Catalytic activity 222 251 28.4%
Subcellular location 0 0 N/A
Sequence annotation 724 5,268 92.5%
Amino acid modifications 143 410 18.3%
Natural Variant 5 8 0.6%
Cross-references 783 16,649 100%
EMBL 783 1,293 100%
InterPro 749 2,369 95.7%
PDB 2 2 0.3%
RefSeq 71 130 9.1%

99.9% of reviewed Oryza sativa subsp. indica entries are annotated with at least one keyword .

98.5% of reviewed Oryza sativa subsp. indica entries are annotated with at least one GO (Gene Ontology ) term.