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Plant protein annotation project

Statistics

UniProt release 2016_05 - May-11, 2016 contains a total of 551,193 reviewed entries, which includes 37,575 entries from 1,994 species of Viridiplantae.

Arabidospis thaliana - 14,639 reviewed entries.

Number of canonical and isoform protein sequences: 16,648 (download data in FASTA format)

Evidence for the existence of protein Percentage of entries
at protein level 38.2%
at transcript level 48.3%
inferred from homology 11.3%
predicted 1.5%
uncertain 0.8%

Annotation categories Entries with Number of annotations Coverage
PubMed citations 14,617 11,391 unique 99.8%
Alternative products 2,923 4,935 20%
General annotation 14,567 75,475 99.5%
Function 9,986 10,077 68.2%
Catalytic activity 3,816 4,212 26.1%
Subcellular location 0 0 N/A
Sequence annotation 14,051 125,519 96%
Amino acid modifications 4,439 15,582 30.3%
Natural Variant 127 814 0.9%
Cross-references 14,639 601,743 100%
EMBL 14,609 70,026 99.8%
InterPro 13,933 43,397 95.2%
PDB 453 1,001 3.1%
RefSeq 14,471 17,820 98.9%
TAIR 14,567 14,623 99.5%

100% of reviewed Arabidopsis thaliana entries are annotated with at least one keyword .

92.8% of reviewed Arabidopsis thaliana entries are annotated with at least one GO (Gene Ontology ) term.

Oryza sativa subsp. japonica (Rice) - 3,485 reviewed entries.

Number of canonical and isoform protein sequences: 3,748 (download data in FASTA format)

Evidence for the existence of protein Percentage of entries
at protein level 12.7%
at transcript level 68.8%
inferred from homology 18.1%
predicted N/A
uncertain 0.4%

Annotation categories Entries with Number of annotations Coverage
PubMed citations 3,485 1,146 unique 100%
Alternative products 243 506 7%
General annotation 3,480 16,564 99.9%
Function 2,651 2,681 76.1%
Catalytic activity 1,188 1,291 34.1%
Subcellular location 0 0 N/A
Sequence annotation 3,246 26,149 93.1%
Amino acid modifications 690 2,077 19.8%
Natural Variant 7 22 0.2%
Cross-references 3,485 120,650 100%
EMBL 3,485 18,245 100%
InterPro 3,409 11,690 97.8%
PDB 53 125 1.5%
RefSeq 3,010 3,586 86.4%

100% of reviewed Oryza sativa subsp. japonica entries are annotated with at least one keyword .

98.3% of reviewed Oryza sativa subsp. japonica entries are annotated with at least one GO (Gene Ontology ) term.

Oryza sativa subsp. indica (Rice) - 778 reviewed entries.

Number of canonical and isoform protein sequences: 787 (download data in FASTA format)

Evidence for the existence of protein Percentage of entries
at protein level 7.8%
at transcript level 27.6%
inferred from homology 64.4%
predicted N/A
uncertain 0.1%

Annotation categories Entries with Number of annotations Coverage
PubMed citations 773 213 unique 99.4%
Alternative products 6 15 0.8%
General annotation 778 3,153 100%
Function 654 662 84.1%
Catalytic activity 222 251 28.5%
Subcellular location 0 0 N/A
Sequence annotation 719 5,243 92.4%
Amino acid modifications 141 408 18.1%
Natural Variant 5 8 0.6%
Cross-references 778 16,864 100%
EMBL 778 1,287 100%
InterPro 744 2,341 95.6%
PDB 2 2 0.3%
RefSeq 71 130 9.1%

99.9% of reviewed Oryza sativa subsp. indica entries are annotated with at least one keyword .

98.7% of reviewed Oryza sativa subsp. indica entries are annotated with at least one GO (Gene Ontology ) term.