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Plant protein annotation project

Statistics

UniProt release 2016_04 - Apr-13, 2016 contains a total of 550,960 reviewed entries, which includes 37,504 entries from 1,992 species of Viridiplantae.

Arabidospis thaliana - 14,605 reviewed entries.

Number of canonical and isoform protein sequences: 16,602 (download data in FASTA format)

Evidence for the existence of protein Percentage of entries
at protein level 38.2%
at transcript level 48.3%
inferred from homology 11.3%
predicted 1.5%
uncertain 0.8%

Annotation categories Entries with Number of annotations Coverage
PubMed citations 14,583 11,325 unique 99.8%
Alternative products 2,917 4,917 20%
General annotation 14,533 75,293 99.5%
Function 9,961 10,052 68.2%
Catalytic activity 3,814 4,210 26.1%
Subcellular location 0 0 N/A
Sequence annotation 14,021 125,115 96%
Amino acid modifications 4,435 15,559 30.4%
Natural Variant 127 814 0.9%
Cross-references 14,605 600,003 100%
EMBL 14,575 69,865 99.8%
InterPro 13,892 43,598 95.1%
PDB 452 997 3.1%
RefSeq 14,438 17,770 98.9%
TAIR 14,533 14,589 99.5%

100% of reviewed Arabidopsis thaliana entries are annotated with at least one keyword .

92.7% of reviewed Arabidopsis thaliana entries are annotated with at least one GO (Gene Ontology ) term.

Oryza sativa subsp. japonica (Rice) - 3,469 reviewed entries.

Number of canonical and isoform protein sequences: 3,731 (download data in FASTA format)

Evidence for the existence of protein Percentage of entries
at protein level 12.7%
at transcript level 68.5%
inferred from homology 18.4%
predicted N/A
uncertain 0.4%

Annotation categories Entries with Number of annotations Coverage
PubMed citations 3,469 1,140 unique 100%
Alternative products 242 504 7%
General annotation 3,465 16,467 99.9%
Function 2,639 2,669 76.1%
Catalytic activity 1,182 1,285 34.1%
Subcellular location 0 0 N/A
Sequence annotation 3,235 25,913 93.3%
Amino acid modifications 685 2,011 19.7%
Natural Variant 7 22 0.2%
Cross-references 3,469 115,152 100%
EMBL 3,469 13,589 100%
InterPro 3,403 11,710 98.1%
PDB 52 124 1.5%
RefSeq 3,044 3,103 87.7%

100% of reviewed Oryza sativa subsp. japonica entries are annotated with at least one keyword .

98.5% of reviewed Oryza sativa subsp. japonica entries are annotated with at least one GO (Gene Ontology ) term.

Oryza sativa subsp. indica (Rice) - 773 reviewed entries.

Number of canonical and isoform protein sequences: 782 (download data in FASTA format)

Evidence for the existence of protein Percentage of entries
at protein level 7.6%
at transcript level 27.7%
inferred from homology 64.6%
predicted N/A
uncertain 0.1%

Annotation categories Entries with Number of annotations Coverage
PubMed citations 768 209 unique 99.4%
Alternative products 6 15 0.8%
General annotation 773 3,113 100%
Function 649 657 84%
Catalytic activity 218 247 28.2%
Subcellular location 0 0 N/A
Sequence annotation 714 4,979 92.4%
Amino acid modifications 137 356 17.7%
Natural Variant 5 8 0.6%
Cross-references 773 16,788 100%
EMBL 773 1,249 100%
InterPro 740 2,325 95.7%
PDB 2 2 0.3%
RefSeq 72 131 9.3%

99.9% of reviewed Oryza sativa subsp. indica entries are annotated with at least one keyword .

98.7% of reviewed Oryza sativa subsp. indica entries are annotated with at least one GO (Gene Ontology ) term.