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Plant protein annotation project

Statistics

UniProt release 2017_01 - Jan-18, 2017 contains a total of 553,474 reviewed entries, which includes 38,393 entries from 2,003 species of Viridiplantae.

Arabidospis thaliana - 15,113 reviewed entries.

Number of canonical and isoform protein sequences: 17,195 (download data in FASTA format)

Evidence for the existence of protein Percentage of entries
at protein level 39.4%
at transcript level 47.1%
inferred from homology 11.3%
predicted 1.5%
uncertain 0.7%

Annotation categories Entries with Number of annotations Coverage
PubMed citations 15,113 12,079 unique 100%
Alternative products 3,020 5,105 20%
General annotation 15,041 78,616 99.5%
Function 10,433 10,540 69%
Catalytic activity 4,122 4,532 27.3%
Subcellular location 0 0 N/A
Sequence annotation 14,517 130,343 96.1%
Amino acid modifications 4,650 16,268 30.8%
Natural Variant 127 814 0.8%
Cross-references 15,113 562,848 100%
EMBL 15,083 72,213 99.8%
InterPro 14,362 45,271 95%
PDB 487 1,102 3.2%
RefSeq 14,596 17,817 96.6%
TAIR 15,039 15,095 99.5%

100% of reviewed Arabidopsis thaliana entries are annotated with at least one keyword .

94.5% of reviewed Arabidopsis thaliana entries are annotated with at least one GO (Gene Ontology ) term.

Oryza sativa subsp. japonica (Rice) - 3,716 reviewed entries.

Number of canonical and isoform protein sequences: 4,007 (download data in FASTA format)

Evidence for the existence of protein Percentage of entries
at protein level 14.7%
at transcript level 67.1%
inferred from homology 17.8%
predicted N/A
uncertain 0.4%

Annotation categories Entries with Number of annotations Coverage
PubMed citations 3,716 1,359 unique 100%
Alternative products 270 561 7.3%
General annotation 3,711 18,096 99.9%
Function 2,855 2,885 76.8%
Catalytic activity 1,268 1,373 34.1%
Subcellular location 0 0 N/A
Sequence annotation 3,476 27,928 93.5%
Amino acid modifications 746 2,228 20.1%
Natural Variant 7 22 0.2%
Cross-references 3,716 116,745 100%
EMBL 3,716 19,523 100%
InterPro 3,642 12,775 98%
PDB 55 128 1.5%
RefSeq 3,213 3,834 86.5%

100% of reviewed Oryza sativa subsp. japonica entries are annotated with at least one keyword .

98.6% of reviewed Oryza sativa subsp. japonica entries are annotated with at least one GO (Gene Ontology ) term.

Oryza sativa subsp. indica (Rice) - 804 reviewed entries.

Number of canonical and isoform protein sequences: 814 (download data in FASTA format)

Evidence for the existence of protein Percentage of entries
at protein level 8.6%
at transcript level 27.5%
inferred from homology 63.8%
predicted N/A
uncertain 0.1%

Annotation categories Entries with Number of annotations Coverage
PubMed citations 804 234 unique 100%
Alternative products 7 17 0.9%
General annotation 804 3,291 100%
Function 676 687 84.1%
Catalytic activity 235 264 29.2%
Subcellular location 0 0 N/A
Sequence annotation 746 5,461 92.8%
Amino acid modifications 146 434 18.2%
Natural Variant 5 8 0.6%
Cross-references 804 14,928 100%
EMBL 804 1,337 100%
InterPro 767 2,471 95.4%
PDB 2 2 0.2%
RefSeq 71 130 8.8%

99.9% of reviewed Oryza sativa subsp. indica entries are annotated with at least one keyword .

98.3% of reviewed Oryza sativa subsp. indica entries are annotated with at least one GO (Gene Ontology ) term.