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Plant protein annotation project

Statistics

UniProt release 2016_08 - Sep-07, 2016 contains a total of 551,987 reviewed entries, which includes 37,853 entries from 1,996 species of Viridiplantae.

Arabidospis thaliana - 14,791 reviewed entries.

Number of canonical and isoform protein sequences: 16,827 (download data in FASTA format)

Evidence for the existence of protein Percentage of entries
at protein level 38.4%
at transcript level 48.1%
inferred from homology 11.2%
predicted 1.5%
uncertain 0.8%

Annotation categories Entries with Number of annotations Coverage
PubMed citations 14,769 11,653 unique 99.9%
Alternative products 2,960 4,999 20%
General annotation 14,719 76,495 99.5%
Function 10,145 10,246 68.6%
Catalytic activity 3,840 4,239 26%
Subcellular location 0 0 N/A
Sequence annotation 14,200 127,152 96%
Amino acid modifications 4,523 15,870 30.6%
Natural Variant 127 814 0.9%
Cross-references 14,791 627,675 100%
EMBL 14,761 70,744 99.8%
InterPro 14,075 44,038 95.2%
PDB 463 1,024 3.1%
RefSeq 14,622 18,011 98.9%
TAIR 14,719 14,775 99.5%

100% of reviewed Arabidopsis thaliana entries are annotated with at least one keyword .

94.3% of reviewed Arabidopsis thaliana entries are annotated with at least one GO (Gene Ontology ) term.

Oryza sativa subsp. japonica (Rice) - 3,568 reviewed entries.

Number of canonical and isoform protein sequences: 3,840 (download data in FASTA format)

Evidence for the existence of protein Percentage of entries
at protein level 13.7%
at transcript level 68%
inferred from homology 17.9%
predicted N/A
uncertain 0.4%

Annotation categories Entries with Number of annotations Coverage
PubMed citations 3,568 1,216 unique 100%
Alternative products 252 524 7.1%
General annotation 3,563 17,057 99.9%
Function 2,725 2,754 76.4%
Catalytic activity 1,192 1,295 33.4%
Subcellular location 0 0 N/A
Sequence annotation 3,328 26,731 93.3%
Amino acid modifications 705 2,162 19.8%
Natural Variant 7 22 0.2%
Cross-references 3,568 120,666 100%
EMBL 3,568 18,736 100%
InterPro 3,501 12,054 98.1%
PDB 54 126 1.5%
RefSeq 3,092 3,696 86.7%

100% of reviewed Oryza sativa subsp. japonica entries are annotated with at least one keyword .

98.2% of reviewed Oryza sativa subsp. japonica entries are annotated with at least one GO (Gene Ontology ) term.

Oryza sativa subsp. indica (Rice) - 792 reviewed entries.

Number of canonical and isoform protein sequences: 802 (download data in FASTA format)

Evidence for the existence of protein Percentage of entries
at protein level 8.6%
at transcript level 27.7%
inferred from homology 63.6%
predicted N/A
uncertain 0.1%

Annotation categories Entries with Number of annotations Coverage
PubMed citations 787 229 unique 99.4%
Alternative products 7 17 0.9%
General annotation 792 3,226 100%
Function 668 677 84.3%
Catalytic activity 223 252 28.2%
Subcellular location 0 0 N/A
Sequence annotation 733 5,376 92.6%
Amino acid modifications 145 433 18.3%
Natural Variant 5 8 0.6%
Cross-references 792 17,500 100%
EMBL 792 1,313 100%
InterPro 757 2,397 95.6%
PDB 2 2 0.3%
RefSeq 71 130 9%

99.9% of reviewed Oryza sativa subsp. indica entries are annotated with at least one keyword .

98.2% of reviewed Oryza sativa subsp. indica entries are annotated with at least one GO (Gene Ontology ) term.