Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.

Plant protein annotation program

Statistics

UniProt release 2015_07 - Jun-24, 2015 contains a total of 548,872 reviewed entries, which includes 36,663 entries from 1,986 species of Viridiplantae.

Arabidospis thaliana - 14,041 reviewed entries.

Number of canonical and isoform protein sequences: 15,930 (download data in FASTA format)

Evidence for the existence of protein Percentage of entries
at protein level 36.9%
at transcript level 49.5%
inferred from homology 11.2%
predicted 1.6%
uncertain 0.8%

Annotation categories Entries with Number of annotations Coverage
PubMed citations 14,019 10,526 unique 99.8%
Alternative products 2,788 4,680 19.9%
General annotation 13,969 71,560 99.5%
Function 9,517 9,591 67.8%
Catalytic activity 3,649 4,030 26%
Subcellular location 0 0 N/A
Sequence annotation 13,436 118,782 95.7%
Amino acid modifications 4,012 14,337 28.6%
Natural Variant 128 819 0.9%
Cross-references 14,041 530,793 100%
EMBL 14,011 67,266 99.8%
InterPro 13,330 41,151 94.9%
PDB 417 920 3%
RefSeq 13,877 17,091 98.8%
TAIR 13,968 14,024 99.5%

100% of reviewed Arabidopsis thaliana entries are annotated with at least one keyword .

92.2% of reviewed Arabidopsis thaliana entries are annotated with at least one GO (Gene Ontology ) term.

Oryza sativa subsp. japonica (Rice) - 3,362 reviewed entries.

Number of canonical and isoform protein sequences: 3,619 (download data in FASTA format)

Evidence for the existence of protein Percentage of entries
at protein level 12.2%
at transcript level 69%
inferred from homology 18.4%
predicted N/A
uncertain 0.4%

Annotation categories Entries with Number of annotations Coverage
PubMed citations 3,360 1,073 unique 99.9%
Alternative products 237 494 7%
General annotation 3,358 15,720 99.9%
Function 2,529 2,553 75.2%
Catalytic activity 1,166 1,267 34.7%
Subcellular location 0 0 N/A
Sequence annotation 3,128 25,027 93%
Amino acid modifications 635 1,928 18.9%
Natural Variant 7 22 0.2%
Cross-references 3,362 101,994 100%
EMBL 3,362 12,990 100%
InterPro 3,291 11,319 97.9%
PDB 45 103 1.3%
RefSeq 2,933 2,990 87.2%

100% of reviewed Oryza sativa subsp. japonica entries are annotated with at least one keyword .

98% of reviewed Oryza sativa subsp. japonica entries are annotated with at least one GO (Gene Ontology ) term.

Oryza sativa subsp. indica (Rice) - 712 reviewed entries.

Number of canonical and isoform protein sequences: 721 (download data in FASTA format)

Evidence for the existence of protein Percentage of entries
at protein level 8%
at transcript level 27.8%
inferred from homology 64%
predicted N/A
uncertain 0.1%

Annotation categories Entries with Number of annotations Coverage
PubMed citations 707 202 unique 99.3%
Alternative products 6 15 0.8%
General annotation 712 2,820 100%
Function 588 596 82.6%
Catalytic activity 207 236 29.1%
Subcellular location 0 0 N/A
Sequence annotation 654 4,589 91.9%
Amino acid modifications 101 290 14.2%
Natural Variant 5 8 0.7%
Cross-references 712 14,811 100%
EMBL 712 1,167 100%
InterPro 682 2,108 95.8%
PDB 1 1 0.1%
RefSeq 59 66 8.3%

99.9% of reviewed Oryza sativa subsp. indica entries are annotated with at least one keyword .

98% of reviewed Oryza sativa subsp. indica entries are annotated with at least one GO (Gene Ontology ) term.