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Plant protein annotation project

Statistics

UniProt release 2017_09 - Sep-27, 2017 contains a total of 555,594 reviewed entries, which includes 39,066 entries from 2,022 species of Viridiplantae.

Arabidospis thaliana - 15,479 reviewed entries.

Number of canonical and isoform protein sequences: 21,163 (download data in FASTA format)

Evidence for the existence of protein Percentage of entries
at protein level 41.7%
at transcript level 44.1%
inferred from homology 10.3%
predicted 3.1%
uncertain 0.7%

Annotation categories Entries with Number of annotations Coverage
PubMed citations 15,479 12,583 unique 100%
Alternative products 3,083 6,439 19.9%
General annotation 14,915 69,798 96.4%
Function 10,741 10,852 69.4%
Catalytic activity 4,197 4,631 27.1%
Subcellular location 11,593 uniprot:(organism:3702 reviewed:yes) N/A
Sequence annotation 14,882 134,779 96.1%
Amino acid modifications 4,809 17,465 31.1%
Natural Variant 127 814 0.8%
Cross-references 15,479 602,126 100%
EMBL 15,449 76,333 99.8%
InterPro 14,739 45,919 95.2%
PDB 542 1,211 3.5%
RefSeq 15,292 21,483 98.8%
TAIR 14,256 14,311 92.1%

100% of reviewed Arabidopsis thaliana entries are annotated with at least one keyword .

95.6% of reviewed Arabidopsis thaliana entries are annotated with at least one GO (Gene Ontology ) term.

Oryza sativa subsp. japonica (Rice) - 3,865 reviewed entries.

Number of canonical and isoform protein sequences: 5,399 (download data in FASTA format)

Evidence for the existence of protein Percentage of entries
at protein level 16.4%
at transcript level 66%
inferred from homology 16.9%
predicted 0.3%
uncertain 0.4%

Annotation categories Entries with Number of annotations Coverage
PubMed citations 3,865 1,535 unique 100%
Alternative products 284 596 7.3%
General annotation 3,791 16,480 98.1%
Function 3,008 3,039 77.8%
Catalytic activity 1,332 1,453 34.5%
Subcellular location 2,718 5,397 70.3%
Sequence annotation 3,632 29,601 94%
Amino acid modifications 782 2,493 20.2%
Natural Variant 8 23 0.2%
Cross-references 3,865 123,247 100%
EMBL 3,865 20,429 100%
InterPro 3,799 13,217 98.3%
PDB 57 132 1.5%
RefSeq 3,353 4,023 86.8%

100% of reviewed Oryza sativa subsp. japonica entries are annotated with at least one keyword .

98.8% of reviewed Oryza sativa subsp. japonica entries are annotated with at least one GO (Gene Ontology ) term.

Oryza sativa subsp. indica (Rice) - 810 reviewed entries.

Number of canonical and isoform protein sequences: 861 (download data in FASTA format)

Evidence for the existence of protein Percentage of entries
at protein level 8.5%
at transcript level 27.4%
inferred from homology 62.6%
predicted 1.4%
uncertain 0.1%

Annotation categories Entries with Number of annotations Coverage
PubMed citations 810 236 unique 100%
Alternative products 7 17 0.9%
General annotation 805 2,876 99.4%
Function 682 693 84.2%
Catalytic activity 240 269 29.6%
Subcellular location 643 uniprot:(organism:39946 reviewed:yes) 79.4%
Sequence annotation 750 5,510 92.6%
Amino acid modifications 147 439 18.1%
Natural Variant 5 8 0.6%
Cross-references 810 15,418 100%
EMBL 810 1,345 100%
InterPro 780 2,503 96.3%
PDB 2 2 0.2%
RefSeq 71 130 8.8%

99.9% of reviewed Oryza sativa subsp. indica entries are annotated with at least one keyword .

98.8% of reviewed Oryza sativa subsp. indica entries are annotated with at least one GO (Gene Ontology ) term.