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ProgramPlant protein annotation program

Statistics

UniProt release 2015_02 - Feb-04, 2015 contains a total of 547,599 reviewed entries, which includes 36,180 entries from 1,984 species of Viridiplantae.

Arabidospis thaliana - 13,640 reviewed entries.

Number of canonical and isoform protein sequences: 15,451 (download data in FASTA format)

Evidence for the existence of protein Percentage of entries
at protein level 36.6%
at transcript level 49.6%
inferred from homology 11.4%
predicted 1.6%
uncertain 0.8%

Annotation categories Entries with Number of annotations Coverage
PubMed citations 13,618 10,001 unique 99.8%
Alternative products 2,703 4,517 19.8%
General annotation 13,630 87,222 99.9%
Function 9,133 9,201 67%
Catalytic activity 3,596 3,967 26.4%
Subcellular location 10,000 16,134 73.3%
Sequence annotation 13,047 114,984 95.7%
Amino acid modifications 3,871 13,763 28.4%
Natural Variant 128 819 0.9%
Cross-references 13,640 509,616 100%
EMBL 13,610 65,322 99.8%
InterPro 12,967 40,109 95.1%
PDB 400 882 2.9%
RefSeq 13,480 16,587 98.8%
TAIR 13,567 13,623 99.5%

100% of reviewed Arabidopsis thaliana entries are annotated with at least one keyword .

92% of reviewed Arabidopsis thaliana entries are annotated with at least one GO (Gene Ontology ) term.

Oryza sativa subsp. japonica (Rice) - 3,321 reviewed entries.

Number of canonical and isoform protein sequences: 3,575 (download data in FASTA format)

Evidence for the existence of protein Percentage of entries
at protein level 11.9%
at transcript level 69.3%
inferred from homology 18.4%
predicted N/A
uncertain 0.4%

Annotation categories Entries with Number of annotations Coverage
PubMed citations 3,319 1,042 unique 99.9%
Alternative products 231 485 7%
General annotation 3,318 19,753 99.9%
Function 2,487 2,511 74.9%
Catalytic activity 1,161 1,262 35%
Subcellular location 2,288 3,590 68.9%
Sequence annotation 3,082 24,416 92.8%
Amino acid modifications 631 1,888 19%
Natural Variant 7 22 0.2%
Cross-references 3,321 97,929 100%
EMBL 3,321 12,791 100%
InterPro 3,255 11,165 98%
PDB 44 102 1.3%
RefSeq 2,896 2,952 87.2%

100% of reviewed Oryza sativa subsp. japonica entries are annotated with at least one keyword .

97.9% of reviewed Oryza sativa subsp. japonica entries are annotated with at least one GO (Gene Ontology ) term.

Oryza sativa subsp. indica (Rice) - 699 reviewed entries.

Number of canonical and isoform protein sequences: 708 (download data in FASTA format)

Evidence for the existence of protein Percentage of entries
at protein level 8.2%
at transcript level 28%
inferred from homology 63.7%
predicted N/A
uncertain 0.1%

Annotation categories Entries with Number of annotations Coverage
PubMed citations 694 200 unique 99.3%
Alternative products 6 15 0.9%
General annotation 699 3,741 100%
Function 573 581 82%
Catalytic activity 206 235 29.5%
Subcellular location 558 847 79.8%
Sequence annotation 640 4,508 91.6%
Amino acid modifications 99 285 14.2%
Natural Variant 5 8 0.7%
Cross-references 699 14,026 100%
EMBL 699 1,150 100%
InterPro 670 2,066 95.9%
PDB 1 1 0.1%
RefSeq 59 66 8.4%

99.9% of reviewed Oryza sativa subsp. indica entries are annotated with at least one keyword .

97.9% of reviewed Oryza sativa subsp. indica entries are annotated with at least one GO (Gene Ontology ) term.