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10K UniProtKB/Swiss-Prot Arabidopsis thaliana entries | Cross-references to Allergome
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Program › Plant protein annotation program
Statistics
UniProt release 2013_06 - May-29, 2013 contains a total of 540,261 reviewed entries, which includes 33,903 entries from 1,966 species of Viridiplantae.
Arabidospis thaliana - 12,069 reviewed entries.
Number of canonical and isoform protein sequences: 13,566 (download data in FASTA format)
| Evidence for the existence of protein | Percentage of entries |
|---|---|
| at protein level | 34.1% |
| at transcript level | 53.1% |
| inferred from homology | 8.6% |
| predicted | 3.4% |
| uncertain | 0.9% |
| Annotation categories | Entries with | Number of annotations | Coverage |
|---|---|---|---|
| PubMed citations | 12,046 | 8,257 unique | 99.8% |
| Alternative products | 2,336 | 3,836 | 19.4% |
| General annotation | 12,058 | 74,652 | 99.9% |
| Function | 7,657 | 7,710 | 63.4% |
| Catalytic activity | 3,226 | 3,547 | 26.7% |
| Subcellular location | 8,740 | 13,852 | 72.4% |
| Sequence annotation | 11,508 | 100,747 | 95.4% |
| Amino acid modifications | 3,181 | 12,257 | 26.4% |
| Natural Variant | 129 | 839 | 1.1% |
| Cross-references | 12,069 | 395,079 | 100% |
| EMBL | 12,042 | 57,798 | 99.8% |
| InterPro | 11,400 | 35,077 | 94.5% |
| PDB | 333 | 709 | 2.8% |
| RefSeq | 11,954 | 14,619 | 99% |
| TAIR | 12,033 | 12,086 | 99.7% |
100% of reviewed Arabidopsis thaliana entries are annotated with at least one keyword .
91.6% of reviewed Arabidopsis thaliana entries are annotated with at least one GO (Gene Ontology ) term.
Oryza sativa subsp. japonica (Rice) - 3,038 reviewed entries.
Number of canonical and isoform protein sequences: 3,281 (download data in FASTA format)
| Evidence for the existence of protein | Percentage of entries |
|---|---|
| at protein level | 10.9% |
| at transcript level | 82.7% |
| inferred from homology | 5.7% |
| predicted | 0.2% |
| uncertain | 0.4% |
| Annotation categories | Entries with | Number of annotations | Coverage |
|---|---|---|---|
| PubMed citations | 3,035 | 928 unique | 99.9% |
| Alternative products | 221 | 464 | 7.3% |
| General annotation | 3,035 | 17,762 | 99.9% |
| Function | 2,217 | 2,241 | 73% |
| Catalytic activity | 1,026 | 1,097 | 33.8% |
| Subcellular location | 2,069 | 3,268 | 68.1% |
| Sequence annotation | 2,811 | 22,329 | 92.5% |
| Amino acid modifications | 603 | 1,842 | 19.8% |
| Natural Variant | 7 | 22 | 0.2% |
| Cross-references | 3,038 | 75,082 | 100% |
| EMBL | 3,037 | 11,569 | 100% |
| InterPro | 2,970 | 10,059 | 97.8% |
| PDB | 41 | 90 | 1.3% |
| RefSeq | 2,635 | 2,689 | 86.7% |
100% of reviewed Oryza sativa subsp. japonica entries are annotated with at least one keyword .
98.1% of reviewed Oryza sativa subsp. japonica entries are annotated with at least one GO (Gene Ontology ) term.
Oryza sativa subsp. indica (Rice) - 623 reviewed entries.
Number of canonical and isoform protein sequences: 632 (download data in FASTA format)
| Evidence for the existence of protein | Percentage of entries |
|---|---|
| at protein level | 8.2% |
| at transcript level | 82% |
| inferred from homology | 9.3% |
| predicted | 0.3% |
| uncertain | 0.2% |
| Annotation categories | Entries with | Number of annotations | Coverage |
|---|---|---|---|
| PubMed citations | 618 | 191 unique | 99.2% |
| Alternative products | 6 | 15 | 1% |
| General annotation | 623 | 3,321 | 100% |
| Function | 495 | 503 | 79.5% |
| Catalytic activity | 185 | 201 | 29.7% |
| Subcellular location | 504 | 777 | 80.9% |
| Sequence annotation | 565 | 4,004 | 90.7% |
| Amino acid modifications | 93 | 275 | 14.9% |
| Natural Variant | 5 | 8 | 0.8% |
| Cross-references | 623 | 9,583 | 100% |
| EMBL | 623 | 1,053 | 100% |
| InterPro | 597 | 1,812 | 95.8% |
| PDB | 0 | 0 | N/A |
| RefSeq | 59 | 66 | 9.5% |
98.1% of reviewed Oryza sativa subsp. indica entries are annotated with at least one keyword .
97.3% of reviewed Oryza sativa subsp. indica entries are annotated with at least one GO (Gene Ontology ) term.