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Program › Chordata protein annotation program
Statistics
UniProt release 2013_06 - May-29, 2013 contains a total of 540,261 reviewed entries, which includes 83,836 entries from 3,121 species of Chordata.
Homo sapiens (Human) - 20,257 reviewed entries.
Number of canonical and isoform protein sequences: 38,529 (download data in FASTA format)
| Evidence for the existence of protein | Percentage of entries |
|---|---|
| at protein level | 67% |
| at transcript level | 28.3% |
| inferred from homology | 1% |
| predicted | 0.5% |
| uncertain | 3.1% |
| Annotation categories | Entries with | Number of annotations | Coverage |
|---|---|---|---|
| PubMed citations | 20,173 | 60,916 unique | 99.6% |
| Alternative products | 9,046 | 27,551 | 44.7% |
| General annotation | 19,887 | 154,013 | 98.2% |
| Function | 14,828 | 15,173 | 73.2% |
| Catalytic activity | 3,065 | 3,494 | 15.1% |
| Subcellular location | 15,495 | 32,036 | 76.5% |
| Sequence annotation | 19,639 | 439,747 | 96.9% |
| Amino acid modifications | 11,358 | 65,515 | 56.1% |
| Natural Variant | 12,489 | 68,454 | 61.7% |
| Cross-references | 20,257 | 1,197,513 | 100% |
| EMBL | 20,141 | 144,635 | 99.4% |
| InterPro | 18,337 | 63,404 | 90.5% |
| PDB | 4,822 | 26,060 | 23.8% |
| RefSeq | 18,774 | 32,796 | 92.7% |
| MIM | 13,686 | 18,059 | 67.6% |
| HGNC | 19,686 | 19,854 | 97.2% |
100% of reviewed human entries are annotated with at least one keyword .
90.4% of reviewed human entries are annotated with at least one GO (Gene Ontology ) term.
Mus musculus (Mouse) - 16,613 reviewed entries.
Number of canonical and isoform protein sequences: 24,503 (download data in FASTA format)
| Evidence for the existence of protein | Percentage of entries |
|---|---|
| at protein level | 47.7% |
| at transcript level | 51% |
| inferred from homology | 0.8% |
| predicted | 0.4% |
| uncertain | 0.1% |
| Annotation categories | Entries with | Number of annotations | Coverage |
|---|---|---|---|
| PubMed citations | 16,538 | 23,253 unique | 99.5% |
| Alternative products | 4,739 | 12,786 | 28.5% |
| General annotation | 16,394 | 115,852 | 98.7% |
| Function | 12,892 | 13,092 | 77.6% |
| Catalytic activity | 2,902 | 3,279 | 17.5% |
| Subcellular location | 13,329 | 27,538 | 80.2% |
| Sequence annotation | 16,208 | 233,125 | 97.6% |
| Amino acid modifications | 10,101 | 56,628 | 60.8% |
| Natural Variant | 367 | 1,160 | 2.2% |
| Cross-references | 16,613 | 685,860 | 100% |
| EMBL | 16,482 | 74,978 | 99.2% |
| InterPro | 15,614 | 54,285 | 94% |
| PDB | 1,315 | 3,957 | 7.9% |
| RefSeq | 15,378 | 19,735 | 92.6% |
| MGI | 16,444 | 16,490 | 99% |
100% of reviewed mouse entries are annotated with at least one keyword .
93.7% of reviewed mouse entries are annotated with at least one GO (Gene Ontology ) term.
Rattus norvegicus (Rat) - 7,854 reviewed entries.
Number of canonical and isoform protein sequences: 9,387 (download data in FASTA format)
| Evidence for the existence of protein | Percentage of entries |
|---|---|
| at protein level | 40.2% |
| at transcript level | 55.5% |
| inferred from homology | 4% |
| predicted | 0.3% |
| uncertain | 0% |
| Annotation categories | Entries with | Number of annotations | Coverage |
|---|---|---|---|
| PubMed citations | 7,406 | 10,718 unique | 94.3% |
| Alternative products | 945 | 2,589 | 12% |
| General annotation | 7,774 | 53,200 | 99% |
| Function | 6,665 | 6,799 | 84.9% |
| Catalytic activity | 1,759 | 2,020 | 22.4% |
| Subcellular location | 6,710 | 14,789 | 85.4% |
| Sequence annotation | 7,583 | 102,392 | 96.5% |
| Amino acid modifications | 5,225 | 29,005 | 66.5% |
| Natural Variant | 114 | 273 | 1.5% |
| Cross-references | 7,854 | 263,585 | 100% |
| EMBL | 7,746 | 14,985 | 98.6% |
| InterPro | 7,476 | 26,894 | 95.2% |
| PDB | 504 | 2,192 | 6.4% |
| RefSeq | 6,937 | 7,667 | 88.3% |
| RGD | 7,764 | 7,768 | 98.9% |
100% of reviewed rat entries are annotated with at least one keyword .
96.6% of reviewed rat entries are annotated with at least one GO (Gene Ontology ) term.