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Program › Chordata protein annotation program
Statistics
UniProt release 2013_05 - May-01, 2013 contains a total of 540,052 reviewed entries, which includes 83,807 entries from 3,121 species of Chordata.
Homo sapiens (Human) - 20,255 reviewed entries.
Number of canonical and isoform protein sequences: 38,517 (download data in FASTA format)
| Evidence for the existence of protein | Percentage of entries |
|---|---|
| at protein level | 66.9% |
| at transcript level | 28.4% |
| inferred from homology | 1% |
| predicted | 0.5% |
| uncertain | 3.1% |
| Annotation categories | Entries with | Number of annotations | Coverage |
|---|---|---|---|
| PubMed citations | 20,171 | 60,592 unique | 99.6% |
| Alternative products | 9,043 | 27,538 | 44.6% |
| General annotation | 19,887 | 153,781 | 98.2% |
| Function | 14,810 | 15,155 | 73.1% |
| Catalytic activity | 3,059 | 3,488 | 15.1% |
| Subcellular location | 15,481 | 31,908 | 76.4% |
| Sequence annotation | 19,634 | 438,861 | 96.9% |
| Amino acid modifications | 11,349 | 65,421 | 56% |
| Natural Variant | 12,489 | 68,418 | 61.7% |
| Cross-references | 20,255 | 1,186,934 | 100% |
| EMBL | 20,139 | 144,614 | 99.4% |
| InterPro | 18,332 | 62,194 | 90.5% |
| PDB | 4,809 | 25,847 | 23.7% |
| RefSeq | 18,777 | 32,729 | 92.7% |
| MIM | 13,687 | 18,052 | 67.6% |
| HGNC | 19,684 | 19,852 | 97.2% |
100% of reviewed human entries are annotated with at least one keyword .
90.4% of reviewed human entries are annotated with at least one GO (Gene Ontology ) term.
Mus musculus (Mouse) - 16,612 reviewed entries.
Number of canonical and isoform protein sequences: 24,497 (download data in FASTA format)
| Evidence for the existence of protein | Percentage of entries |
|---|---|
| at protein level | 47.6% |
| at transcript level | 51.1% |
| inferred from homology | 0.8% |
| predicted | 0.4% |
| uncertain | 0.1% |
| Annotation categories | Entries with | Number of annotations | Coverage |
|---|---|---|---|
| PubMed citations | 16,536 | 23,117 unique | 99.5% |
| Alternative products | 4,736 | 12,779 | 28.5% |
| General annotation | 16,393 | 115,616 | 98.7% |
| Function | 12,877 | 13,077 | 77.5% |
| Catalytic activity | 2,896 | 3,273 | 17.4% |
| Subcellular location | 13,315 | 27,417 | 80.2% |
| Sequence annotation | 16,204 | 232,668 | 97.5% |
| Amino acid modifications | 10,094 | 56,548 | 60.8% |
| Natural Variant | 367 | 1,160 | 2.2% |
| Cross-references | 16,612 | 676,074 | 100% |
| EMBL | 16,481 | 74,965 | 99.2% |
| InterPro | 15,607 | 53,200 | 94% |
| PDB | 1,307 | 3,927 | 7.9% |
| RefSeq | 15,384 | 19,720 | 92.6% |
| MGI | 16,443 | 16,489 | 99% |
100% of reviewed mouse entries are annotated with at least one keyword .
93.7% of reviewed mouse entries are annotated with at least one GO (Gene Ontology ) term.
Rattus norvegicus (Rat) - 7,853 reviewed entries.
Number of canonical and isoform protein sequences: 9,386 (download data in FASTA format)
| Evidence for the existence of protein | Percentage of entries |
|---|---|
| at protein level | 40.2% |
| at transcript level | 55.5% |
| inferred from homology | 4% |
| predicted | 0.3% |
| uncertain | 0% |
| Annotation categories | Entries with | Number of annotations | Coverage |
|---|---|---|---|
| PubMed citations | 7,405 | 10,692 unique | 94.3% |
| Alternative products | 945 | 2,589 | 12% |
| General annotation | 7,773 | 53,071 | 99% |
| Function | 6,659 | 6,793 | 84.8% |
| Catalytic activity | 1,758 | 2,019 | 22.4% |
| Subcellular location | 6,703 | 14,715 | 85.4% |
| Sequence annotation | 7,580 | 102,252 | 96.5% |
| Amino acid modifications | 5,220 | 28,973 | 66.5% |
| Natural Variant | 114 | 273 | 1.5% |
| Cross-references | 7,853 | 262,065 | 100% |
| EMBL | 7,745 | 14,976 | 98.6% |
| InterPro | 7,474 | 26,316 | 95.2% |
| PDB | 502 | 2,173 | 6.4% |
| RefSeq | 6,940 | 7,697 | 88.4% |
| RGD | 7,763 | 7,767 | 98.9% |
100% of reviewed rat entries are annotated with at least one keyword .
96.6% of reviewed rat entries are annotated with at least one GO (Gene Ontology ) term.