Skip Header

Program › Caenorhabditis protein annotation program

Statistics

UniProt release 2013_06 - May-29, 2013 contains a total of 540,261 reviewed entries, which includes 4,010 entries from 4 species of genus Caenorhabditis.

Caenorhabditis elegans - 3,428 reviewed entries.

Number of canonical and isoform protein sequences: 4,340 (download data in FASTA format)

Evidence for the existence of protein Percentage of entries
at protein level 29.2%
at transcript level 21.8%
inferred from homology 33.9%
predicted 14.9%
uncertain 0.2%

Annotation categories Entries with Number of annotations Coverage
PubMed citations 3,428 1,784 unique 100%
Alternative products 578 1,506 16.9%
General annotation 3,101 15,431 90.5%
Function 1,960 1,967 57.2%
Catalytic activity 726 776 21.2%
Subcellular location 2,075 3,411 60.5%
Sequence annotation 2,824 22,307 82.4%
Amino acid modifications 710 3,884 20.7%
Cross-references 3,428 101,781 100%
EMBL 3,428 6,108 100%
InterPro 3,064 9,767 89.4%
PDB 78 151 2.3%
RefSeq 3,389 4,362 98.9%
WormBase 3,389 4,336 98.9%

100% of reviewed Caenorhabditis elegans entries are annotated with at least one keyword.

87% of reviewed Caenorhabditis elegans entries are annotated with at least one GO (Gene Ontology) term.

Caenorhabditis briggsae - 568 reviewed entries.

Number of canonical and isoform protein sequences: 573 (download data in FASTA format)

Evidence for the existence of protein Percentage of entries
at protein level 0.9%
at transcript level 2.6%
inferred from homology 93.3%
predicted 3.2%
uncertain N/A

Annotation categories Entries with Number of annotations Coverage
PubMed citations 568 41 unique 100%
Alternative products 5 10 0.9%
General annotation 562 2,648 98.9%
Function 475 476 83.6%
Catalytic activity 146 161 25.7%
Subcellular location 410 664 72.2%
Sequence annotation 473 3,188 83.3%
Amino acid modifications 112 437 19.7%
Cross-references 568 10,497 100%
EMBL 568 834 100%
InterPro 540 1,739 95.1%
PDB 0 0 N/A
RefSeq 374 376 65.8%
WormBase 556 558 97.9%

100% of reviewed Caenorhabditis briggsae entries are annotated with at least one keyword.

93.8% of reviewed Caenorhabditis briggsae entries are annotated with at least one GO (Gene Ontology) term.