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UniProt release 2.5

Published September 13, 2004

UniProtKB News

Changes concerning keywords

Deleted keyword:

  • Parotid gland

Changes concerning the controlled vocabulary for PTMs

We are continuously overhauling the annotation of post-translational modifications (PTMs). For the feature key MOD_RES, the new introduced controlled vocabularies for PTMs are:

  • Flavin binding: All entries with annotated flavin-binding sites have the keyword Flavoprotein.

     FMN phosphoryl serine (Keyword: FMN)    
     FMN phosphoryl threonine (Keyword: FMN) 
     O-8alpha-FAD tyrosine (Keyword: FAD)    
     S-4a-FMN cysteine (Keyword: FMN)        
     S-6-FMN cysteine (Keyword: FMN)        
     S-8alpha-FAD cysteine (Keyword: FAD)    
     Tele-8alpha-FAD histidine (Keyword: FAD)
     Tele-8alpha-FMN histidine (Keyword: FMN)
    
  • Hydroxylation: All entries with annotated hydroxylation sites have the keyword Hydroxylation.

     4,5-dihydroxylysine       
     3,4-dihydroxyproline
    
  • Other new controlled vocabularies for PTMs that are annotated with the feature key MOD_RES:

     O-(sn-1-glycerophosphoryl)serine