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Publications on UniProt

Last modified April 29, 2015

How to cite us

If you find UniProt useful, please consider citing our latest publication:

The UniProt Consortium
UniProt: a hub for protein information
Nucleic Acids Res. 43: D204-D212 (2015).

...or choose the publication that best covers the UniProt aspects or components you used in your work:

Publications on UniProt databases

Magrane M. and the UniProt consortium
UniProt Knowledgebase: a hub of integrated protein data
Database, 2011: bar009 (2011).

Jain E., Bairoch A., Duvaud S., Phan I., Redaschi N., Suzek B.E., Martin M.J., McGarvey P., Gasteiger E.
Infrastructure for the life sciences: design and implementation of the UniProt website
BMC Bioinformatics, 10:136 (2009).

Suzek B.E., Huang H., McGarvey P., Mazumder R., Wu C.H.
UniRef: Comprehensive and Non-Redundant UniProt Reference Clusters
Bioinformatics 23:1282-1288 (2007).

Leinonen R., Nardone F., Zhu W., Apweiler R.
UniSave: the UniProtKB Sequence/Annotation Version database
Bioinformatics 22:1284-1285 (2006).

Boeckmann B., Blatter M.-C., Famiglietti L., Hinz U., Lane L., Roechert B., Bairoch A.
Protein variety and functional diversity: Swiss-Prot annotation in its biological context
C. R. Biol. 328:882-899 (2005).

Apweiler R., Bairoch A., Wu C.H.
Protein sequence databases
Curr. Opin. Chem. Biol. 8:76-80 (2004).

Bairoch A., Boeckmann B., Ferro S., Gasteiger E.
Swiss-Prot: juggling between evolution and stability
Brief. Bioinform. 5:39-55 (2004).

Leinonen R., Diez F.G., Binns D., Fleischmann W., Lopez R., Apweiler R.
UniProt Archive
Bioinformatics 20:3236-3237 (2004).

Publications on annotation projects

Pedruzzi I., Rivoire C., Auchincloss A.H., Coudert E., Keller G., de Castro E., Baratin D., Cuche B.A., Bougueleret L., Poux S., Redaschi N., Xenarios I., Bridge A.; UniProt Consortium
HAMAP in 2013, new developments in the protein family classification and annotation system.
Nucleic Acids Res. 41:D584-D589 (2013).

Schneider M., Poux S., UniProt Consortium.
UniProtKB amid the turmoil of plant proteomics research front
Front. Plant Sci. 3:270-270 (2012)

Jungo F., Bougueleret L., Xenarios I., Poux S.
The UniProtKB/Swiss-Prot Tox-Prot program: A central hub of integrated venom protein data
Toxicon 60:551-557 (2012).

Hinz U., UniProt Consortium.
From protein sequences to 3D-structures and beyond: the example of the UniProt knowledgebase
Cell. Mol. Life Sci. 67:1049-1064 (2010).

Lima T., Auchincloss A.H., Coudert E., Keller G., Michoud K., Rivoire C., Bulliard V., de Castro E., Lachaize C., Baratin D., Phan I., Bougueleret L., Bairoch A.
HAMAP: a database of completely sequenced microbial proteome sets and manually curated microbial protein families in UniProtKB/Swiss-Prot
Nucleic Acids Res. 37:D471-D478 (2009).

Braconi Quintaje S., Orchard S.
The annotation of both human and mouse kinomes in UniProtKB/Swiss-Prot: one small step in manual annotation, one giant leap for full comprehension of genomes
Mol. Cell. Proteomics 7:1409-1419 (2008).

Farriol-Mathis N., Garavelli J.S., Boeckmann B., Duvaud S., Gasteiger E., Gateau A., Veuthey A.-L., Bairoch A.
Annotation of post-translational modifications in the Swiss-Prot knowledgebase
Proteomics 4:1537-1550 (2004).

Yip Y.L., Scheib H., Diemand A.V., Gattiker A., Famiglietti L.M., Gasteiger E., Bairoch A.
The Swiss-Prot variant page and the ModSNP database: a resource for sequence and structure information on human protein variants
Hum. Mutat. 23:464-470 (2004).

Gattiker A., Michoud K., Rivoire C., Auchincloss A.H., Coudert E., Lima T., Kersey P., Pagni M., Sigrist C.J., Lachaize C., Veuthey A.-L., Gasteiger E., Bairoch A.
Automated annotation of microbial proteomes in Swiss-Prot
Comput. Biol. Chem. 27:49-58 (2003).

See also: Past publications