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3D-structure annotation in UniProtKB/Swiss-Prot

Documents about 3D-structure annotation in UniProtKB/Swiss-Prot

About UniProt

History and background.

Accession

Provides a stable way of identifying UniProtKB entries

Active site

Amino acid(s) directly involved in the activity of an enzyme

UniProtKB advanced search options

List of options available in the "Advanced search" interface.

Using Jalview and Java Web Start

Using Jalview and Java Web Start for alignment results

Allergenic properties

Information relevant to allergenic proteins

Alternative products

Description of the different proteins generated from the same gene

Annotation guidelines

Standard operating procedure, protein naming, protein existence

Annotation score

Annotation scores provide a measure of how much annotation has been associated with a given entry or proteome.

Automatic annotation
Alex Bateman

Alex Bateman short biography

Binary interactions

Information relevant to binary protein-protein interactions

Why are only a subset of binary interactions from the IntAct database reported in UniProtKB?
Binding site

Binding site for any chemical group (co-enzyme, prosthetic group, etc.)

Biocuration in UniProt

Manual and automatic annotation in the UniProt Knowledgebase

Biophysicochemical properties

Description of biophysical and physicochemical properties

Biotechnological use

The use of a specific protein in the biotechnological industry

Browser support

Recommended list of major web browsers for the UniProt website.

Calcium binding

Denotes the position(s) of calcium binding region(s) within the protein

Caenorhabditis protein annotation project

The Caenorhabditis protein annotation program focuses on the manual annotation of and proteins.

What is the canonical sequence? Are all isoforms described in one entry?
How do I get the nucleotide sequence that corresponds to the canonical UniProtKB sequence?
Glycosylation

Covalently attached glycan group(s)

Catalytic activity

Description of the reaction(s) catalyzed by an enzyme

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