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Unreviewed, UniProtKB/TrEMBL Q9XYR0 (Q9XYR0_DROME)

Last modified November 25, 2008. Version 61. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data | Customize display text xml rdf/xml gff fasta
Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Sequences · References · Cross-references · Entry information

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Names and origin

Protein namesSubmitted name:
    CG3048-PA, isoform A (LD20987p) (TNF-receptor-associated factor 1) EMBL AAF51024.1
Gene names
Name: Traf4 FlyBase FBgn0026319
Synonyms: TRAF1 EMBL AAD34346.1, Traf1 EMBL AAF51024.1 FlyBase FBgn0026319
ORF Names: CG3048 FlyBase FBgn0026319, Dmel_CG3048 EMBL AAF51024.1
OrganismDrosophila melanogaster (Fruit fly) [Complete proteome]
Taxonomic identifier7227 [NCBI]
Taxonomic lineageEukaryota › Metazoa › Arthropoda › Hexapoda › Insecta › Pterygota › Neoptera › Endopterygota › Diptera › Brachycera › Muscomorpha › Ephydroidea › Drosophilidae › Drosophila › Sophophora

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Protein attributes

Sequence length486 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is not processed.
Protein existenceEvidence at transcript level.

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General annotation (Comments)

Sequence similarities

Contains 1 MATH domain. RuleBase RU004402V0

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Sequences

Sequence LengthMass (Da)Tools
Q9XYR0-1 [UniParc].

Last modified November 1, 1999. Version 1.
Checksum: 41474B5E014A99D5

FASTA48653,665
        10         20         30         40         50         60 
MVRSLAQWTK TLSFPSRLSP NRNSKDCSTL ASPVPPPTPP RNKTTSGSGN CATSRSSSST 

        70         80         90        100        110        120 
VSSSHSSSHS SPTPGNNNNN MPITELEQII YPGPDPKHIM GSLVFCIHHK QGCKWSDELR 

       130        140        150        160        170        180 
KLKGHLNACK HDATQCPNKC GAQIPRIMMT DHLQYTCTMR RTRCEFCQSE FSGAGLEEHN 

       190        200        210        220        230        240 
GSCGQEPVYC EAKCGQRILR GRMTLHKSKD CAKRLRRCAH CQREFSADTL PLHAAQCPRA 

       250        260        270        280        290        300 
PLACPQRCDA GPIPRGELEA HLRDECQSLA VSCSFKEAGC RFKGPRQMLE AHLESNAAAH 

       310        320        330        340        350        360 
LSLMVALSSR QGQQIQMLKS AVSKLSINYT GTLLWKITDW SAKMAEARGK DGLELVSPPF 

       370        380        390        400        410        420 
YTSQYGYKLQ ASMFLNGNGP GENTHVSVYI KVLPGEYDAL LKWPFSHSIT FTLFEQGAQS 

       430        440        450        460        470        480 
GQGGVAESFV PDPTWENFQR PSNEPDQLGF GFPRFISHEL LHSRPFIKGD TVFLRVKVDP 


SKIVAV

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References

« Hide 'large scale' references
[1]"The genome sequence of Drosophila melanogaster."
Adams M.D., Celniker S.E., Holt R.A., Evans C.A., Gocayne J.D., Amanatides P.G., Scherer S.E., Li P.W., Hoskins R.A., Galle R.F., George R.A., Lewis S.E., Richards S., Ashburner M., Henderson S.N., Sutton G.G., Wortman J.R., Yandell M.D. expand/collapse author list , Zhang Q., Chen L.X., Brandon R.C., Rogers Y.-H.C., Blazej R.G., Champe M., Pfeiffer B.D., Wan K.H., Doyle C., Baxter E.G., Helt G., Nelson C.R., Miklos G.L.G., Abril J.F., Agbayani A., An H.-J., Andrews-Pfannkoch C., Baldwin D., Ballew R.M., Basu A., Baxendale J., Bayraktaroglu L., Beasley E.M., Beeson K.Y., Benos P.V., Berman B.P., Bhandari D., Bolshakov S., Borkova D., Botchan M.R., Bouck J., Brokstein P., Brottier P., Burtis K.C., Busam D.A., Butler H., Cadieu E., Center A., Chandra I., Cherry J.M., Cawley S., Dahlke C., Davenport L.B., Davies P., de Pablos B., Delcher A., Deng Z., Mays A.D., Dew I., Dietz S.M., Dodson K., Doup L.E., Downes M., Dugan-Rocha S., Dunkov B.C., Dunn P., Durbin K.J., Evangelista C.C., Ferraz C., Ferriera S., Fleischmann W., Fosler C., Gabrielian A.E., Garg N.S., Gelbart W.M., Glasser K., Glodek A., Gong F., Gorrell J.H., Gu Z., Guan P., Harris M., Harris N.L., Harvey D.A., Heiman T.J., Hernandez J.R., Houck J., Hostin D., Houston K.A., Howland T.J., Wei M.-H., Ibegwam C., Jalali M., Kalush F., Karpen G.H., Ke Z., Kennison J.A., Ketchum K.A., Kimmel B.E., Kodira C.D., Kraft C.L., Kravitz S., Kulp D., Lai Z., Lasko P., Lei Y., Levitsky A.A., Li J.H., Li Z., Liang Y., Lin X., Liu X., Mattei B., McIntosh T.C., McLeod M.P., McPherson D., Merkulov G., Milshina N.V., Mobarry C., Morris J., Moshrefi A., Mount S.M., Moy M., Murphy B., Murphy L., Muzny D.M., Nelson D.L., Nelson D.R., Nelson K.A., Nixon K., Nusskern D.R., Pacleb J.M., Palazzolo M., Pittman G.S., Pan S., Pollard J., Puri V., Reese M.G., Reinert K., Remington K., Saunders R.D.C., Scheeler F., Shen H., Shue B.C., Siden-Kiamos I., Simpson M., Skupski M.P., Smith T.J., Spier E., Spradling A.C., Stapleton M., Strong R., Sun E., Svirskas R., Tector C., Turner R., Venter E., Wang A.H., Wang X., Wang Z.-Y., Wassarman D.A., Weinstock G.M., Weissenbach J., Williams S.M., Woodage T., Worley K.C., Wu D., Yang S., Yao Q.A., Ye J., Yeh R.-F., Zaveri J.S., Zhan M., Zhang G., Zhao Q., Zheng L., Zheng X.H., Zhong F.N., Zhong W., Zhou X., Zhu S.C., Zhu X., Smith H.O., Gibbs R.A., Myers E.W., Rubin G.M., Venter J.C.
Science 287:2185-2195(2000) [PubMed: 10731132] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: Berkeley.
[2]"Annotation of the Drosophila melanogaster euchromatic genome: a systematic review."
Misra S., Crosby M.A., Mungall C.J., Matthews B.B., Campbell K.S., Hradecky P., Huang Y., Kaminker J.S., Millburn G.H., Prochnik S.E., Smith C.D., Tupy J.L., Whitfield E.J., Bayraktaroglu L., Berman B.P., Bettencourt B.R., Celniker S.E., de Grey A.D.N.J. expand/collapse author list , Drysdale R.A., Harris N.L., Richter J., Russo S., Schroeder A.J., Shu S.Q., Stapleton M., Yamada C., Ashburner M., Gelbart W.M., Rubin G.M., Lewis S.E.
Genome Biol. 3:RESEARCH0083.1-RESEARCH0083.22(2002) [PubMed: 12537572] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: Berkeley.
[3]Stapleton M., Brokstein P., Hong L., Agbayani A., Carlson J., Champe M., Chavez C., Dorsett V., Dresnek D., Farfan D., Frise E., George R., Gonzalez M., Guarin H., Kronmiller B., Li P., Liao G., Miranda A. expand/collapse author list , Mungall C.J., Nunoo J., Pacleb J., Paragas V., Park S., Patel S., Phouanenavong S., Wan K., Yu C., Lewis S.E., Rubin G.M., Celniker S.
Submitted (APR-2002) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
Strain: Berkeley EMBL AAM11145.1.
[4]"A Drosophila TNF-receptor-associated factor (TRAF) binds the ste20 kinase Misshapen and activates Jun kinase."
Liu H., Su Y.C., Becker E., Treisman J., Skolnik E.Y.
Curr. Biol. 9:101-104(1999) [PubMed: 10021364] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
[5]Skolnik E.S., Liu H., Su Y.-C., Becker E., Treisman J.
Submitted (JAN-1999) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
+Additional computationally mapped references.

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Cross-references

Sequence databases

AF119794 mRNA. Translation: AAD34346.1.
AE014134 Genomic DNA. Translation: AAF51024.1.
AY094792 mRNA. Translation: AAM11145.1.
RefSeqNP_477416.1.
UniGeneDm.3100

3D structure databases

HSSPHSSP built from PDB template 1L0A based on UniProtKB Q13114.
ModBaseSearch...

Protein-protein interaction databases

IntActQ9XYR0.

Genome annotation databases

GeneID33638.

Organism-specific databases

FlyBaseFBgn0026319. Traf4.

Phylogenomic databases

HOGENOMQ9XYR0.

Gene expression databases

ArrayExpressQ9XYR0.

Family and domain databases

InterProIPR002083. MATH.
IPR012227. TNF_recpt_TRAF.
IPR013322. TRAF-type.
IPR001293. Znf_TRAF.
[Graphical view]
Gene3DG3DSA:2.60.210.10. TRAF-type. 1 hit.
PfamPF00917. MATH. 1 hit.
PF02176. zf-TRAF. 3 hits.
[Graphical view]
PIRSFPIRSF015614. TRAF. 1 hit.
SMARTSM00061. MATH. 1 hit.
[Graphical view]
PROSITEPS50144. MATH. 1 hit.
PS50145. ZF_TRAF. 3 hits.
[Graphical view]

Other Resources

NextBio784548.

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Entry information

Entry nameQ9XYR0_DROME
AccessionPrimary (citable) accession number: Q9XYR0
Entry history
Integrated into UniProtKB/TrEMBL: November 1, 1999
Last sequence update: November 1, 1999
Last modified: November 25, 2008
This is version 61 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Sequences · References · Cross-references · Entry information