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Unreviewed, UniProtKB/TrEMBL Q9VUD5 (Q9VUD5_DROME)

Last modified November 4, 2008. Version 63. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (1) | Third-party data | Customize display text xml rdf/xml gff fasta
Names and origin · Protein attributes · Ontologies · Sequences · References · Cross-references · Entry information · Relevant documents

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Names and origin

Protein namesSubmitted name:
    CG5842-PA (TRP channel protein nanchung) EMBL AAF49752.2
Gene names
Name: nan EMBL AAF49752.2
ORF Names: CG5842 FlyBase FBgn0036414, Dmel_CG5842 EMBL AAF49752.2
OrganismDrosophila melanogaster (Fruit fly) [Complete proteome]
Taxonomic identifier7227 [NCBI]
Taxonomic lineageEukaryota › Metazoa › Arthropoda › Hexapoda › Insecta › Pterygota › Neoptera › Endopterygota › Diptera › Brachycera › Muscomorpha › Ephydroidea › Drosophilidae › Drosophila › Sophophora

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Protein attributes

Sequence length833 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is not processed.
Protein existenceEvidence at transcript level.

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Ontologies

Keywords

   Biological processIon transport
Transport
   Cellular componentMembrane
   DomainANK repeat RuleBase RU003321V2
Repeat RuleBase RU003536V1
Transmembrane RuleBase RU003378V0
   Molecular functionIonic channel RuleBase RU003378V0 Spearmint SPM005821
   Technical termComplete proteome

Gene Ontology (GO)

   Biological processsensory perception of sound Ref.3

Inferred from mutant phenotype. Source: FlyBase

Complete GO annotation...

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Sequences

Sequence LengthMass (Da)Tools
Q9VUD5-1 [UniParc].

Last modified July 5, 2004. Version 2.
Checksum: DCE6BEC9D66ABB40

FASTA83396,196
        10         20         30         40         50         60 
MGNTESNVTS GVKKQAGVST QALYKFVNLK GGGLLVDMMK RACQTKQFAE IDHAIKTKVE 

        70         80         90        100        110        120 
PFLYNKGAGR YFPISKLVLL RNRDRPRTRQ LPEIRALENP DDDFNIHDYC PEVSEAEYIS 

       130        140        150        160        170        180 
NPTAYRFVCW DLNMRGAVGE TILHLCLLNA SSLHADLAKR LLKFYPKLIL DIYMSDEYYG 

       190        200        210        220        230        240 
ESVLHIAIVN EDPAMVKYLL DANADVQERC CGAFMSAEDT KFSRTDSPDH EYVALCPMTN 

       250        260        270        280        290        300 
YDGYVYWGEY PLSFAACLSQ EECFRLVLAR GADPDFQDTN GNTVLHMLVI YEKIEMFDVG 

       310        320        330        340        350        360 
YEVGTNIHIK NIQNLTPLTL AAKLGRVEMF FHVMSIEREI YWQLGSITCA AYPLLMIDTI 

       370        380        390        400        410        420 
NEETGNINKD SVLNFVVFGD KLEHLELLDG VVIDLLKTKW DTFCKSRFYK QFYMFALYFL 

       430        440        450        460        470        480 
ISLFSFILRP GPDAKDEDED GANSTTAKSD LYRQNGSDSY HLHSKRATMT TEYKTFWLNF 

       490        500        510        520        530        540 
TEYYDPSEVE VLPAWWESYA QCPLMNLESD LAKLRIMAEL LNFVGAILYL LVALREARFL 

       550        560        570        580        590        600 
GLKMFIENLM TAPSRVMFLF SCALMMTIPW LRVSCLTEID DHVTVVIMLT TAPYFLFFCR 

       610        620        630        640        650        660 
GFKTVGPFVV MIYRMVMGDL LRFVSIYLVF VMGFSQAFYI IFLTFDNPSS PEDQDAESNP 

       670        680        690        700        710        720 
MPSPMESIVA MFLMSLTNFG DYYGAMVSTQ HEYEAKILFF LFMVIVSVLL VNMLIAMMGN 

       730        740        750        760        770        780 
TYQKIAEIRN EWQRQWARIV LVVERSVPPA ERLKNFMQYS QSMSDGRRAL VLRLNMTEEK 

       790        800        810        820        830 
EEMKEVQEMK RIHQRFAKKR QMEREARALR RQQEYEKFFG TAPKSECSDN NNF

« Hide

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References

« Hide 'large scale' references
[1]"Annotation of the Drosophila melanogaster euchromatic genome: a systematic review."
Misra S., Crosby M.A., Mungall C.J., Matthews B.B., Campbell K.S., Hradecky P., Huang Y., Kaminker J.S., Millburn G.H., Prochnik S.E., Smith C.D., Tupy J.L., Whitfield E.J., Bayraktaroglu L., Berman B.P., Bettencourt B.R., Celniker S.E., de Grey A.D.N.J. expand/collapse author list , Drysdale R.A., Harris N.L., Richter J., Russo S., Schroeder A.J., Shu S.Q., Stapleton M., Yamada C., Ashburner M., Gelbart W.M., Rubin G.M., Lewis S.E.
Genome Biol. 3:RESEARCH0083.1-RESEARCH0083.22(2002) [PubMed: 12537572] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: Berkeley.
[2]"The genome sequence of Drosophila melanogaster."
Adams M.D., Celniker S.E., Holt R.A., Evans C.A., Gocayne J.D., Amanatides P.G., Scherer S.E., Li P.W., Hoskins R.A., Galle R.F., George R.A., Lewis S.E., Richards S., Ashburner M., Henderson S.N., Sutton G.G., Wortman J.R., Yandell M.D. expand/collapse author list , Zhang Q., Chen L.X., Brandon R.C., Rogers Y.-H.C., Blazej R.G., Champe M., Pfeiffer B.D., Wan K.H., Doyle C., Baxter E.G., Helt G., Nelson C.R., Miklos G.L.G., Abril J.F., Agbayani A., An H.-J., Andrews-Pfannkoch C., Baldwin D., Ballew R.M., Basu A., Baxendale J., Bayraktaroglu L., Beasley E.M., Beeson K.Y., Benos P.V., Berman B.P., Bhandari D., Bolshakov S., Borkova D., Botchan M.R., Bouck J., Brokstein P., Brottier P., Burtis K.C., Busam D.A., Butler H., Cadieu E., Center A., Chandra I., Cherry J.M., Cawley S., Dahlke C., Davenport L.B., Davies P., de Pablos B., Delcher A., Deng Z., Mays A.D., Dew I., Dietz S.M., Dodson K., Doup L.E., Downes M., Dugan-Rocha S., Dunkov B.C., Dunn P., Durbin K.J., Evangelista C.C., Ferraz C., Ferriera S., Fleischmann W., Fosler C., Gabrielian A.E., Garg N.S., Gelbart W.M., Glasser K., Glodek A., Gong F., Gorrell J.H., Gu Z., Guan P., Harris M., Harris N.L., Harvey D.A., Heiman T.J., Hernandez J.R., Houck J., Hostin D., Houston K.A., Howland T.J., Wei M.-H., Ibegwam C., Jalali M., Kalush F., Karpen G.H., Ke Z., Kennison J.A., Ketchum K.A., Kimmel B.E., Kodira C.D., Kraft C.L., Kravitz S., Kulp D., Lai Z., Lasko P., Lei Y., Levitsky A.A., Li J.H., Li Z., Liang Y., Lin X., Liu X., Mattei B., McIntosh T.C., McLeod M.P., McPherson D., Merkulov G., Milshina N.V., Mobarry C., Morris J., Moshrefi A., Mount S.M., Moy M., Murphy B., Murphy L., Muzny D.M., Nelson D.L., Nelson D.R., Nelson K.A., Nixon K., Nusskern D.R., Pacleb J.M., Palazzolo M., Pittman G.S., Pan S., Pollard J., Puri V., Reese M.G., Reinert K., Remington K., Saunders R.D.C., Scheeler F., Shen H., Shue B.C., Siden-Kiamos I., Simpson M., Skupski M.P., Smith T.J., Spier E., Spradling A.C., Stapleton M., Strong R., Sun E., Svirskas R., Tector C., Turner R., Venter E., Wang A.H., Wang X., Wang Z.-Y., Wassarman D.A., Weinstock G.M., Weissenbach J., Williams S.M., Woodage T., Worley K.C., Wu D., Yang S., Yao Q.A., Ye J., Yeh R.-F., Zaveri J.S., Zhan M., Zhang G., Zhao Q., Zheng L., Zheng X.H., Zhong F.N., Zhong W., Zhou X., Zhu S.C., Zhu X., Smith H.O., Gibbs R.A., Myers E.W., Rubin G.M., Venter J.C.
Science 287:2185-2195(2000) [PubMed: 10731132] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: Berkeley.
[3]"A TRPV family ion channel required for hearing in Drosophila."
Kim J., Chung Y.D., Park D.Y., Choi S., Shin D.W., Soh H., Lee H.W., Son W., Yim J., Park C.S., Kernan M.J., Kim C.
Nature 424:81-84(2003) [PubMed: 12819662] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: Canton-S EMBL AAP57097.1.
+Additional computationally mapped references.

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Cross-references

Sequence databases

AE014296 Genomic DNA. Translation: AAF49752.2.
AY262004 mRNA. Translation: AAP57097.1.
RefSeqNP_648696.2.
UniGeneDm.15300

3D structure databases

ModBaseSearch...

Genome annotation databases

GeneID39571.
KEGGdme:Dmel_CG5842.
NMPDRfig|7227.3.peg.9794.

Organism-specific databases

FlyBaseFBgn0036414. nan.

Phylogenomic databases

HOGENOMQ9VUD5.

Gene expression databases

ArrayExpressQ9VUD5.

Family and domain databases

InterProIPR002110. ANK.
IPR005821. Ion_trans.
[Graphical view]
Gene3DG3DSA:1.25.40.20. ANK. 1 hit.
PfamPF00023. Ank. 5 hits.
PF00520. Ion_trans. 1 hit.
[Graphical view]
PRINTSPR01415. ANKYRIN.
SMARTSM00248. ANK. 5 hits.
[Graphical view]
PROSITEPS50297. ANK_REP_REGION. 1 hit.
PS50088. ANK_REPEAT. 2 hits.
[Graphical view]

Other Resources

NextBio814324.

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Entry information

Entry nameQ9VUD5_DROME
AccessionPrimary (citable) accession number: Q9VUD5
Secondary accession number(s): Q7Z077
Entry history
Integrated into UniProtKB/TrEMBL: May 1, 2000
Last sequence update: July 5, 2004
Last modified: November 4, 2008
This is version 63 of the entry and version 2 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)

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Relevant documents

UniProtKB secondary accession numbers

Index of UniProtKB secondary accession numbers

Names and origin · Protein attributes · Ontologies · Sequences · References · Cross-references · Entry information · Relevant documents