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Reviewed, UniProtKB/Swiss-Prot Q84WU6 (ARFQ_ARATH)

Last modified July 22, 2008. Version 37. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (3) | Third-party data | Customize display text xml rdf/xml gff fasta
Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Sequence annotation (Features) · Sequences · References · Cross-references · Entry information · Relevant documents

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Names and origin

Protein namesRecommended name:
    Auxin response factor 17
Gene names
Name: ARF17
Ordered Locus Names: At1g77850
ORF Names: F28K19.6, T32E8.16
OrganismArabidopsis thaliana (Mouse-ear cress) [Complete proteome]
Taxonomic identifier3702 [NCBI]
Taxonomic lineageEukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliophyta › eudicotyledons › core eudicotyledons › rosids › eurosids II › Brassicales › Brassicaceae › Arabidopsis

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Protein attributes

Sequence length585 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is not processed.
Protein existenceEvidence at transcript level.

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General annotation (Comments)

Function

Auxin response factors (ARFs) are transcriptional factors that binds specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression.

Subunit structure

Homo and heterodimers By similarity.

Subcellular location

Nucleus.

Sequence similarities

Belongs to the ARF family.

Contains 1 TF-B3 DNA-binding domain.

Sequence caution

The sequence AAF17677.1 differs from that shown. Reason: Erroneous gene model prediction.

The sequence AAG51629.1 differs from that shown. Reason: Erroneous gene model prediction.

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Ontologies

Keywords

   Biological processAuxin signaling pathway
Transcription
Transcription regulation
   Cellular componentNucleus
   LigandDNA-binding
   Technical termComplete proteome

Gene Ontology (GO)

None. [Check GOA]

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Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical view

Molecule processing

Chain1 – 585585Auxin response factor 17

Regions

DNA binding119 – 221103TF-B3

Experimental info

Sequence conflict1021R → Q in AAL07033. Ref.2
Sequence conflict4561G → R in AAL07033. Ref.2

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Sequences

Sequence LengthMass (Da)Tools
Q84WU6-1 [UniParc].

Last modified June 1, 2003. Version 1.
Checksum: C36984B4326B8620

FASTA58563,742
        10         20         30         40         50         60 
MSPPSATAGD INHREVDPTI WRACAGASVQ IPVLHSRVYY FPQGHVEHCC PLLSTLPSST 

        70         80         90        100        110        120 
SPVPCIITSI QLLADPVTDE VFAHLILQPM TQQQFTPTNY SRFGRFDGDV DDNNKVTTFA 

       130        140        150        160        170        180 
KILTPSDANN GGGFSVPRFC ADSVFPLLNF QIDPPVQKLY VTDIHGAVWD FRHIYRGTPR 

       190        200        210        220        230        240 
RHLLTTGWSK FVNSKKLIAG DSVVFMRKSA DEMFIGVRRT PISSSDGGSS YYGGDEYNGY 

       250        260        270        280        290        300 
YSQSSVAKED DGSPKKTFRR SGNGKLTAEA VTDAINRASQ GLPFEVVFYP AAGWSEFVVR 

       310        320        330        340        350        360 
AEDVESSMSM YWTPGTRVKM AMETEDSSRI TWFQGIVSST YQETGPWRGS PWKQLQITWD 

       370        380        390        400        410        420 
EPEILQNVKR VNPWQVEIAA HATQLHTPFP PAKRLKYPQP GGGFLSGDDG EILYPQSGLS 

       430        440        450        460        470        480 
SAAAPDPSPS MFSYSTFPAG MQGARQYDFG SFNPTGFIGG NPPQLFTNNF LSPLPDLGKV 

       490        500        510        520        530        540 
STEMMNFGSP PSDNLSPNSN TTNLSSGNDL VGNRGPLSKK VNSIQLFGKI ITVEEHSESG 

       550        560        570        580 
PAESGLCEED GSKESSDNET QLSLSHAPPS VPKHSNSNAG SSSQG

« Hide

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References

« Hide 'large scale' references
[1]"Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana."
Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O., Alonso J., Altafi H., Araujo R., Bowman C.L., Brooks S.Y., Buehler E., Chan A., Chao Q., Chen H., Cheuk R.F., Chin C.W., Chung M.K. expand/collapse author list , Conn L., Conway A.B., Conway A.R., Creasy T.H., Dewar K., Dunn P., Etgu P., Feldblyum T.V., Feng J.-D., Fong B., Fujii C.Y., Gill J.E., Goldsmith A.D., Haas B., Hansen N.F., Hughes B., Huizar L., Hunter J.L., Jenkins J., Johnson-Hopson C., Khan S., Khaykin E., Kim C.J., Koo H.L., Kremenetskaia I., Kurtz D.B., Kwan A., Lam B., Langin-Hooper S., Lee A., Lee J.M., Lenz C.A., Li J.H., Li Y.-P., Lin X., Liu S.X., Liu Z.A., Luros J.S., Maiti R., Marziali A., Militscher J., Miranda M., Nguyen M., Nierman W.C., Osborne B.I., Pai G., Peterson J., Pham P.K., Rizzo M., Rooney T., Rowley D., Sakano H., Salzberg S.L., Schwartz J.R., Shinn P., Southwick A.M., Sun H., Tallon L.J., Tambunga G., Toriumi M.J., Town C.D., Utterback T., Van Aken S., Vaysberg M., Vysotskaia V.S., Walker M., Wu D., Yu G., Fraser C.M., Venter J.C., Davis R.W.
Nature 408:816-820(2000) [PubMed: 11130712] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: cv. Columbia.
[2]"Empirical analysis of transcriptional activity in the Arabidopsis genome."
Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M., Wu H.C., Kim C.J., Nguyen M., Pham P.K., Cheuk R.F., Karlin-Newmann G., Liu S.X., Lam B., Sakano H., Wu T., Yu G. expand/collapse author list , Miranda M., Quach H.L., Tripp M., Chang C.H., Lee J.M., Toriumi M.J., Chan M.M., Tang C.C., Onodera C.S., Deng J.M., Akiyama K., Ansari Y., Arakawa T., Banh J., Banno F., Bowser L., Brooks S.Y., Carninci P., Chao Q., Choy N., Enju A., Goldsmith A.D., Gurjal M., Hansen N.F., Hayashizaki Y., Johnson-Hopson C., Hsuan V.W., Iida K., Karnes M., Khan S., Koesema E., Ishida J., Jiang P.X., Jones T., Kawai J., Kamiya A., Meyers C., Nakajima M., Narusaka M., Seki M., Sakurai T., Satou M., Tamse R., Vaysberg M., Wallender E.K., Wong C., Yamamura Y., Yuan S., Shinozaki K., Davis R.W., Theologis A., Ecker J.R.
Science 302:842-846(2003) [PubMed: 14593172] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
Strain: cv. Columbia.
[3]"Auxin-responsive gene expression: genes, promoters and regulatory factors."
Hagen G., Guilfoyle T.J.
Plant Mol. Biol. 49:373-385(2002) [PubMed: 12036261] [Abstract]
Cited for: GENE FAMILY, NOMENCLATURE, FUNCTION.

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Cross-references

Sequence databases

AC009243 Genomic DNA. Translation: AAF17677.1. Sequence problems.
AC012193 Genomic DNA. Translation: AAG51629.1. Sequence problems.
AY056184 mRNA. Translation: AAL07033.1.
BT002749 mRNA. Translation: AAO22578.1.
PIRD96808.
RefSeqNP_565161.1.
UniGeneAt.26363

3D structure databases

ModBaseSearch...

Genome annotation databases

GeneID844120.
GenomeReviewsGene locus AT1G77850 in contig CT485782_GR.
KEGGath:AT1G77850.
NMPDRfig|3702.1.peg.7330.

Organism-specific databases

GeneFarm3413. 345.
TAIRAt1g77850.

Gene expression databases

ArrayExpressQ84WU6.
GermOnlineAT1G77850. Arabidopsis thaliana.

Family and domain databases

InterProIPR010525. Auxin_resp.
IPR003340. TF_B3.
[Graphical view]
PfamPF06507. Auxin_resp. 1 hit.
PF02362. B3. 1 hit.
[Graphical view]
PROSITEPS50863. B3. 1 hit.
[Graphical view]
ProDomQ84WU6.
[Graphical view] [Entries sharing at least one domain]
BLOCKSSearch...

Other Resources

ProtoNetSearch...

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Entry information

Entry nameARFQ_ARATH
AccessionPrimary (citable) accession number: Q84WU6
Secondary accession number(s): Q93ZY5, Q9CA12, Q9SH16
Entry history
Integrated into UniProtKB/Swiss-Prot: April 26, 2004
Last sequence update: June 1, 2003
Last modified: July 22, 2008
This is version 37 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation projectPPAP (Plant Proteome Annotation Project)

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Relevant documents

Arabidopsis thaliana

Arabidopsis thaliana: entries and gene names

UniProtKB secondary accession numbers

Index of UniProtKB secondary accession numbers

SIMILARITY comments

Index of protein domains and families

Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Sequence annotation (Features) · Sequences · References · Cross-references · Entry information · Relevant documents