Sensory box/ggdef family protein, putative - Salinibacter ruber (strain DSM 13855)

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Unreviewed, UniProtKB/TrEMBL Q2S5Y4 (Q2S5Y4_SALRD)

Last modified November 4, 2008. Version 21. History...

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Names and origin · Protein attributes · Ontologies · Sequences · References · Cross-references · Entry information

Names and origin

Protein names

Submitted name:
Sensory box/ggdef family protein, putative EMBL ABC44382.1

Gene names

Ordered Locus Names:

SRU_0251

Organism

Salinibacter ruber (strain DSM 13855) [Complete proteome] [HAMAP]

Taxonomic identifier

Taxonomic lineage

Bacteria › Bacteroidetes › Sphingobacteria › Sphingobacteriales › Rhodothermaceae › Salinibacter

Protein attributes

Sequence length	1118 AA.
Sequence status	Complete.
Sequence processing	The displayed sequence is not processed.
Protein existence	Predicted.

Ontologies

Keywords
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	regulation of transcription, DNA-dependent Inferred from electronic annotation. Source: InterPro two-component signal transduction system (phosphorelay) Inferred from electronic annotation. Source: InterPro
Molecular function	two-component sensor activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

Sequence

Length

Mass (Da)

Tools

Q2S5Y4-1 [UniParc].

Last modified January 24, 2006. Version 1.
Checksum: 5D243402C99C71BF
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1,118

124,894

        10         20         30         40         50         60 
MSHSAPVGEA RRLGALGRLN ILDTDSEVAF DQIAEVAQQV FGTQGAAVSL VAEERQWFKA 

        70         80         90        100        110        120 
ACGISLDETP REQSFCTHVI EGDGVMVVQD VQADPRFRDN SLIEEEGIRF YAGAPLSVGD 

       130        140        150        160        170        180 
QLHVGTLCLT DPAPRSFGEE DRALLTQLAS VATNLLEARL QAHENRYLTS ALEQVDEPVS 

       190        200        210        220        230        240 
IIEGNPEKPS EARLAWANDA YAARGETTQS ALEGKTPWVF ENLERGSETE SRVCHALKVG 

       250        260        270        280        290        300 
EPVRGKTPED EKDAARQTFT WVLAPVRNHE QITHWIVVQQ DTTEQQRVQQ AMRTQRDRLQ 

       310        320        330        340        350        360 
RMQGVAQTGG WEYDPKSDSF TGSNEFYRLI GLPQSTNFDL ERAFQLYPPS VRGRVKTAAQ 

       370        380        390        400        410        420 
RCLEDGSPFD MEVPLVSATG QHREVRVRGS AEREEGRTAR MTGTIQDITT RKQREQHLRQ 

       430        440        450        460        470        480 
ANALFEHSQE GFLLFDLKQD EDEAEFVIQR VNPAYEQMSG RRADEVRGRS VRDIHGEEQG 

       490        500        510        520        530        540 
AEIASHLRRC AGQGEPKDWE MKLKTNGSMT YWSVQAAPIY GEDGQVQQIT ATVRNVTERK 

       550        560        570        580        590        600 
NREEKIRESR ERWRLLVESH RDPVQITVGK TIQYVNSSAV ELYGASDPEE IVGRSVLEFA 

       610        620        630        640        650        660 
TNDGPGARSE MDKALQAHQE ELLREEPPSF EYEIKRLDGE RRVVEFYSVS IKYEGKQAAQ 

       670        680        690        700        710        720 
TVLRDVTQQR REEARLRHRA THDQLTGLYR DSVFRERAQQ AIDASDEDKG ALLYVDLDQF 

       730        740        750        760        770        780 
KSINDKNGHH VGDAVLMEAA NRICSVVRDV DPVGRMGGDE FAVWSSSVTD SETAKTMAQR 

       790        800        810        820        830        840 
ITLVLDQPYA VEDRCLQVGA SVGFAVCDLE DQDIDGLIQD ADAAMYRAKS SPDRSLSHHG 

       850        860        870        880        890        900 
PSAGSKKNTS LRAEVRRGID QNEFEPLFLP VVRLSDGNLV GFEVLARWRR EDGNLDPPDV 

       910        920        930        940        950        960 
FLGVAEETGM ISPITQSVLE EACRKVESLQ QHRGPDLSVA LSGNFSRQEF FREETHEFVR 

       970        980        990       1000       1010       1020 
HLLEEYDLAP SNLTMEVTER LLENENQTNT AVVDRLRSLG VNVEIDDFGT GYSSFHSLLQ 

      1030       1040       1050       1060       1070       1080 
FPTDGLKLDK GLISETTASE DACVATRSVI EMAKSLGLRV TAEGIETTAQ LEVLRDLGCP 

      1090       1100       1110 
LGQGFLFSRP VPAGDLPALI DSPPWADLWK DESASPVG

References

[1]

"The genome of Salinibacter ruber: convergence and gene exchange among hyperhalophilic bacteria and archaea."
Mongodin E.F., Nelson K.E., Daugherty S., DeBoy R.T., Wister J., Khouri H., Weidman J., Walsh D.A., Papke R.T., Sanchez Perez G., Sharma A.K., Nesbo C.L., MacLeod D., Bapteste E., Doolittle W.F., Charlebois R.L., Legault B., Rodriguez-Valera F.
Proc. Natl. Acad. Sci. U.S.A. 102:18147-18152(2005) [PubMed: 16330755] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Cross-references

Sequence databases
	CP000159 Genomic DNA. Translation: ABC44382.1.
RefSeq	YP_444397.1.
3D structure databases
ModBase	Search...
Genome annotation databases
GeneID	3851415.
GenomeReviews	Gene locus SRU_0251 in contig CP000159_GR.
KEGG	sru:SRU_0251.
NMPDR	fig\|309807.5.peg.224.
TIGR	SRU_0251.
Phylogenomic databases
HOGENOM	Q2S5Y4.
Enzyme and pathway databases
BioCyc	SRUB309807:SRU_0251-MON.
Family and domain databases
InterPro	IPR001633. EAL. IPR003018. GAF. IPR000160. GGDEF. IPR001610. PAC. IPR000014. PAS. IPR000700. PAS-assoc_C. IPR013655. PAS_3. IPR013656. PAS_4. [Graphical view]
Pfam	PF00563. EAL. 1 hit. PF01590. GAF. 1 hit. PF00990. GGDEF. 1 hit. PF08447. PAS_3. 1 hit. PF08448. PAS_4. 2 hits. [Graphical view]
SMART	SM00267. DUF1. 1 hit. SM00052. DUF2. 1 hit. SM00065. GAF. 1 hit. SM00086. PAC. 4 hits. SM00091. PAS. 2 hits. [Graphical view]
TIGRFAMs	TIGR00254. GGDEF. 1 hit. TIGR00229. sensory_box. 3 hits.
PROSITE	PS50883. EAL. 1 hit. PS50887. GGDEF. 1 hit. PS50113. PAC. 2 hits. [Graphical view]

Entry information

Entry name

Q2S5Y4_SALRD

Accession

Primary (citable) accession number: Q2S5Y4

Entry history

Integrated into UniProtKB/TrEMBL:	January 24, 2006
Last sequence update:	January 24, 2006
Last modified:	November 4, 2008
This is version 21 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)

Names and origin · Protein attributes · Ontologies · Sequences · References · Cross-references · Entry information