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Unreviewed, UniProtKB/TrEMBL Q2JV17 (Q2JV17_SYNJA)

Last modified September 2, 2008. Version 17. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data | Customize display text xml rdf/xml gff fasta
Names and origin · Protein attributes · Ontologies · Sequences · References · Cross-references · Entry information

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Names and origin

Protein namesSubmitted name:
    GAF domain protein EMBL ABC99435.1
Gene names
Ordered Locus Names: CYA_1252
OrganismSynechococcus sp. (strain JA-3-3Ab) (Cyanobacteria bacterium Yellowstone A-Prime) [Complete proteome] [HAMAP]
Taxonomic identifier321327 [NCBI]
Taxonomic lineageBacteria › Cyanobacteria › Chroococcales › Synechococcus

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Protein attributes

Sequence length406 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is not processed.
Protein existencePredicted.

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Ontologies

Keywords

   Technical termComplete proteome

Gene Ontology (GO)

   Molecular functioncatalytic activity

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

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Sequences

Sequence LengthMass (Da)Tools
Q2JV17-1 [UniParc].

Last modified March 7, 2006. Version 1.
Checksum: 8969E1EB419C64C4

FASTA40645,438
        10         20         30         40         50         60 
MSHGPFAFDL SPGEAKFEAA AALRLSQRLI QVGIALSSET DLRRLLELIV AQARELTCCD 

        70         80         90        100        110        120 
GASLFIREGE ELRFFVVNRN EELQDLRLPL APSSIVGYVV LTGESLNLPD VYRLPAGLPY 

       130        140        150        160        170        180 
AFNSQVDQQT GYRTRSLLTV PMRDPSGNIL GALQLLNRLR PDRPADLAPD QVADWSQPFS 

       190        200        210        220        230        240 
ELEVQVAEAL ASQAAVAYQN VRLREELKAA HLETIFCLAQ AAEYRDQDTA FHLKRMSHYS 

       250        260        270        280        290        300 
RILAKELGLS SHEQELIFYA SPLHDVGKIG IPDAILQKPG PLTPEERLIM NRHPEIGYEI 

       310        320        330        340        350        360 
LSKSDSELMK KSAIIALTHH EKFDGSGYPR GLKGEEIPLE GRIVALADVF DALASRRPYK 

       370        380        390        400 
KAWNLDEIFG FVESQSSSHF DPHVVAAFTR GRGEILEIYH RYQEPR

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References

[1]"Population level functional diversity in a microbial community revealed by comparative genomic and metagenomic analyses."
Bhaya D., Grossman A.R., Steunou A.-S., Khuri N., Cohan F.M., Hamamura N., Melendrez M.C., Bateson M.M., Ward D.M., Heidelberg J.F.
ISME J. 1:703-713(2007) [PubMed: 18059494] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

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Cross-references

Sequence databases

CP000239 Genomic DNA. Translation: ABC99435.1.
RefSeqYP_474698.1.

3D structure databases

ModBaseSearch...

Genome annotation databases

GeneID3899383.
GenomeReviewsGene locus CYA_1252 in contig CP000239_GR.
KEGGcya:CYA_1252.
TIGRCYA_1252.

Phylogenomic databases

HOGENOMQ2JV17.

Family and domain databases

InterProIPR003018. GAF.
IPR003607. Met-dep_phosphohydro_HD.
IPR006674. Met-dep_phosphohydro_HD_sub.
[Graphical view]
PfamPF01590. GAF. 1 hit.
PF01966. HD. 1 hit.
[Graphical view]
SMARTSM00065. GAF. 1 hit.
SM00471. HDc. 1 hit.
[Graphical view]

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Entry information

Entry nameQ2JV17_SYNJA
AccessionPrimary (citable) accession number: Q2JV17
Entry history
Integrated into UniProtKB/TrEMBL: March 7, 2006
Last sequence update: March 7, 2006
Last modified: September 2, 2008
This is version 17 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
Names and origin · Protein attributes · Ontologies · Sequences · References · Cross-references · Entry information