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Unreviewed, UniProtKB/TrEMBL Q1IT25 (Q1IT25_ACIBL)

Last modified July 22, 2008. Version 17. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data | Customize display text xml rdf/xml gff fasta
Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Sequences · References · Cross-references · Entry information

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Names and origin

Protein namesSubmitted name:
    Two component transcriptional regulator, LuxR family EMBL ABF39975.1
Gene names
Ordered Locus Names: Acid345_0972
OrganismAcidobacteria bacterium (strain Ellin345) [Complete proteome] [HAMAP]
Taxonomic identifier204669 [NCBI]
Taxonomic lineageBacteria › Acidobacteria › Acidobacteriales › Acidobacteriaceae

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Protein attributes

Sequence length227 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is not processed.
Protein existencePredicted.

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General annotation (Comments)

Sequence similarities

Contains 1 HTH luxR-type DNA-binding domain. RuleBase RU000707V5 Spearmint SPM000792

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Sequences

Sequence LengthMass (Da)Tools
Q1IT25-1 [UniParc].

Last modified June 13, 2006. Version 1.
Checksum: AFD85D941B81D5D0

FASTA22724,682
        10         20         30         40         50         60 
MDKSTATKTV RILIADDHTI FRDGLRRLLE SEPEFDVIGE AADGGEAVQQ ARRLGPDVLL 

        70         80         90        100        110        120 
LDLAMPRVPG LDALRELTTD DSSTKIIILT AAIEKAQIVQ ALQAGAKGII LKESATQLLL 

       130        140        150        160        170        180 
KGIRSVMAGQ YWVGRESVND IVEYLKSTAA GAQADSQAKN FGLTKREMEI LGTIVAGFTN 

       190        200        210        220 
KEIAKKFNLS EDTVKHHLTN IFDKVGVSSR LELALFAINQ RLAEPVS

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References

[1]"Complete sequence of Acidobacteria bacterium Ellin345."
Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Brettin T., Bruce D., Han C., Tapia R., Kiss H., Gilna P., Schmutz J. expand/collapse author list , Larimer F., Land M., Hauser L., Kyrpides N., Lykidis A., Kuske C., Janssen P.H., Richardson P.
Submitted (APR-2006) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

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Cross-references

Sequence databases

CP000360 Genomic DNA. Translation: ABF39975.1.
RefSeqYP_590049.1.

3D structure databases

ModBaseSearch...

Genome annotation databases

GeneID4072960.
GenomeReviewsGene locus Acid345_0972 in contig CP000360_GR.
KEGGaba:Acid345_0972.
NMPDRfig|204669.6.peg.958.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMQ1IT25.

Family and domain databases

InterProIPR000792. HTH_LuxR.
IPR001789. Sig_transdc_resp-reg_receiver.
IPR011991. Wing_hlx_DNA_bd.
[Graphical view]
Gene3DG3DSA:1.10.10.10. Wing_hlx_DNA_bd. 1 hit.
PfamPF00196. GerE. 1 hit.
PF00072. Response_reg. 1 hit.
[Graphical view]
PRINTSPR00038. HTHLUXR.
ProDomPD000307. HTH_LuxR. 1 hit.
PD000039. Response_reg. 1 hit.
[Graphical view] [Entries sharing at least one domain]
SMARTSM00421. HTH_LUXR. 1 hit.
SM00448. REC. 1 hit.
[Graphical view]
PROSITEPS00622. HTH_LUXR_1. 1 hit.
PS50043. HTH_LUXR_2. 1 hit.
PS50110. RESPONSE_REGULATORY. 1 hit.
[Graphical view]

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Entry information

Entry nameQ1IT25_ACIBL
AccessionPrimary (citable) accession number: Q1IT25
Entry history
Integrated into UniProtKB/TrEMBL: June 13, 2006
Last sequence update: June 13, 2006
Last modified: July 22, 2008
This is version 17 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Sequences · References · Cross-references · Entry information