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Unreviewed, UniProtKB/TrEMBL Q1IM38 (Q1IM38_ACIBL)

Last modified July 22, 2008. Version 15. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data | Customize display text xml rdf/xml gff fasta
Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Sequences · References · Cross-references · Entry information

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Names and origin

Protein namesSubmitted name:
    Two component transcriptional regulator, winged helix family EMBL ABF42062.1
Gene names
Ordered Locus Names: Acid345_3061
OrganismAcidobacteria bacterium (strain Ellin345) [Complete proteome] [HAMAP]
Taxonomic identifier204669 [NCBI]
Taxonomic lineageBacteria › Acidobacteria › Acidobacteriales › Acidobacteriaceae

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Protein attributes

Sequence length229 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is not processed.
Protein existencePredicted.

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General annotation (Comments)

Sequence similarities

Contains 1 response regulatory domain. Spearmint SPM001867 RuleBase RU000713V1

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Sequences

Sequence LengthMass (Da)Tools
Q1IM38-1 [UniParc].

Last modified June 13, 2006. Version 1.
Checksum: 637321CB221C107E

FASTA22926,085
        10         20         30         40         50         60 
MNEHILLIED EEALLTTLTD RLRAEGYSVE VARNGEEGYH HGTRNVFDLI ILDIQLPKRN 

        70         80         90        100        110        120 
GFDVCRDIRQ AGVATPILML TARGQLVDKV VGLKIGADDY MTKPFEMIEL MARIEALLRR 

       130        140        150        160        170        180 
SPMRPPEKEE VQQFGDLRVD LRGTEVTREG KPVALSAREF QLLRYLLENR GKTVSRGELL 

       190        200        210        220 
KEVWGYSAST YTRTVDMHIA SLRQKIEPDP KQPQWVHTVP GLGYKFAAL

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References

[1]"Complete sequence of Acidobacteria bacterium Ellin345."
Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C., Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S., Brettin T., Bruce D., Han C., Tapia R., Kiss H., Gilna P., Schmutz J. expand/collapse author list , Larimer F., Land M., Hauser L., Kyrpides N., Lykidis A., Kuske C., Janssen P.H., Richardson P.
Submitted (APR-2006) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

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Cross-references

Sequence databases

CP000360 Genomic DNA. Translation: ABF42062.1.
RefSeqYP_592136.1.

3D structure databases

ModBaseSearch...

Genome annotation databases

GeneID4071968.
GenomeReviewsGene locus Acid345_3061 in contig CP000360_GR.
KEGGaba:Acid345_3061.
NMPDRfig|204669.6.peg.3061.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMQ1IM38.

Family and domain databases

InterProIPR001867. Sig_transdc_resp-reg_C.
IPR001789. Sig_transdc_resp-reg_receiver.
[Graphical view]
PfamPF00072. Response_reg. 1 hit.
PF00486. Trans_reg_C. 1 hit.
[Graphical view]
ProDomPD000039. Response_reg. 1 hit.
PD000329. Trans_reg_C. 1 hit.
[Graphical view] [Entries sharing at least one domain]
SMARTSM00448. REC. 1 hit.
[Graphical view]
PROSITEPS50110. RESPONSE_REGULATORY. 1 hit.
[Graphical view]

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Entry information

Entry nameQ1IM38_ACIBL
AccessionPrimary (citable) accession number: Q1IM38
Entry history
Integrated into UniProtKB/TrEMBL: June 13, 2006
Last sequence update: June 13, 2006
Last modified: July 22, 2008
This is version 15 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Sequences · References · Cross-references · Entry information