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Reviewed, UniProtKB/Swiss-Prot P61108 (DEOC1_STAAM)

Last modified July 22, 2008. Version 36. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (4) | Third-party data | Customize display text xml rdf/xml gff fasta
Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Sequence annotation (Features) · Sequences · References · Cross-references · Entry information · Relevant documents

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Names and origin

Protein namesRecommended name:
    Deoxyribose-phosphate aldolase 1
    EC=4.1.2.4
Alternative name(s):
    Phosphodeoxyriboaldolase 1
      Short name(s)=Deoxyriboaldolase 1, DERA 1
Gene names
Name: deoC1
Synonyms: dra
Ordered Locus Names: SAV0138
OrganismStaphylococcus aureus (strain Mu50 / ATCC 700699) [Complete proteome] [HAMAP]
Taxonomic identifier158878 [NCBI]
Taxonomic lineageBacteria › Firmicutes › Bacillales › Staphylococcus

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Protein attributes

Sequence length220 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is not processed.
Protein existenceEvidence at protein level.

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General annotation (Comments)

Catalytic activity

2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde.

Pathway

Carbohydrate degradation; 2-deoxy-D-ribose 1-phosphate degradation; D-glyceraldehyde 3-phosphate and acetaldehyde from 2-deoxy-D-ribose 1-phosphate: step 2/2.

Subcellular location

CytoplasmBy similarity.

Sequence similarities

Belongs to the deoC/fbaB aldolase family. DeoC type 1 subfamily.

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Ontologies

Keywords

   Cellular componentCytoplasm
   LigandSchiff base
   Molecular functionLyase
   Technical termComplete proteome

Gene Ontology (GO)

   Biological processcarbohydrate catabolic process

Inferred from electronic annotation. Source: HAMAP

   Cellular componentcytoplasm

Inferred from electronic annotation. Source: HAMAP

   Molecular functiondeoxyribose-phosphate aldolase activity

Inferred from electronic annotation. Source: HAMAP

Complete GO annotation...

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Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical view

Molecule processing

Chain1 – 220220Deoxyribose-phosphate aldolase 1

Sites

Active site1511Schiff-base intermediate with acetaldehyde By similarity
Active site1801 By similarity

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Sequences

Sequence LengthMass (Da)Tools
P61108-1 [UniParc].

Last modified April 26, 2004. Version 1.
Checksum: A77DAC561C6B70A3

FASTA22023,472
        10         20         30         40         50         60 
MKFEKYIDHT LLKPESTRTQ IDQIIDEAKA YNFKSVCVNP THVKYAAERL ADSEVLVCTV 

        70         80         90        100        110        120 
IGFPLGASTT ATKAFETEDA IQNGADEIDM VINIGALKDG RFDDVQQDIE AVVKAAKGHT 

       130        140        150        160        170        180 
VKVIIETVLL DHDEIVKASE LTKAAGADFV KTSTGFAGGG ATAEDVKLMK DTVGADVEVK 

       190        200        210        220 
ASGGVRNLED FNKMVEAGAT RIGASAGVQI MQGLEADSDY

« Hide

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Cross-references

Sequence databases

BA000017 Genomic DNA. Translation: BAB56300.1.
RefSeqNP_370662.1.

3D structure databases

HSSPHSSP built from PDB template 1O0Y based on UniProtKB Q9X1P5.
ModBaseSearch...

2-D gel databases

World-2DPAGE0002:P61108.

Genome annotation databases

GeneID1120097.
GenomeReviewsGene locus SAV0138 in contig BA000017_GR.
KEGGsav:SAV0138.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMP61108.

Enzyme and pathway databases

BioCycSAUR158878:SAV0138-MON.

Family and domain databases

HAMAPMF_00114.
[Tree]
InterProIPR013785. Aldolase_TIM.
IPR011343. DeoC.
IPR002915. DeoC/AroFGH_arch.
[Graphical view]
Gene3DG3DSA:3.20.20.70. Aldolase_TIM. 1 hit.
PANTHERPTHR10889. DeoC. 1 hit.
PfamPF01791. DeoC. 1 hit.
[Graphical view]
PIRSFPIRSF001357. DeoC. 1 hit.
TIGRFAMsTIGR00126. deoC. 1 hit.
ProDomP61108.
[Graphical view] [Entries sharing at least one domain]
BLOCKSSearch...

Other Resources

LinkHubP61108.
ProtoNetSearch...

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Entry information

Entry nameDEOC1_STAAM
AccessionPrimary (citable) accession number: P61108
Secondary accession number(s): Q99X77
Entry history
Integrated into UniProtKB/Swiss-Prot: April 26, 2004
Last sequence update: April 26, 2004
Last modified: July 22, 2008
This is version 36 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation projectHAMAP (High-quality Automated and Manual Annotation of microbial Proteomes)

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Relevant documents

PATHWAY comments

Index of metabolic and biosynthesis pathways

UniProtKB secondary accession numbers

Index of UniProtKB secondary accession numbers

SIMILARITY comments

Index of protein domains and families

Recent format changes

Overview of recent format changes

Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Sequence annotation (Features) · Sequences · References · Cross-references · Entry information · Relevant documents