yeast3.txt
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UniProt - Swiss-Prot Protein Knowledgebase
SIB Swiss Institute of Bioinformatics; Geneva, Switzerland
European Bioinformatics Institute (EBI); Hinxton, United Kingdom
Protein Information Resource (PIR); Washington DC, USA
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Description: Yeast (Saccharomyces cerevisiae) chromosome 3: entries and
gene names
Name: yeast3.txt
Release: 2013_05 of 01-May-2013
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Yeast chromosome 3 open reading frames
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Reference for complete sequence:
RX PubMed=1574125
RA Oliver S.G., van der Aart Q.J.M., Agostoni-Carbone M.L., Aigle M.,
RA Alberghina L., Alexandraki D., Antoine G., Anwar R., Ballesta J.P.G.,
RA Benit P., Berben G., Bergantino E., Biteau N., Bolle P.-A.,
RA Bolotin-Fukuhara M., Brown A., Brown A.J.P., Buhler J.-M., Carcano C.,
RA Carignani G., Cederberg H., Chanet R., Contreras R., Crouzet M.,
RA Daignan-Fornier B., Defoor E., Delgado M.D., Demolder J., Doira C.,
RA Dubois E., Dujon B., Duesterhoeft A., Erdmann D., Esteban M., Fabre
RA F., Fairhead C., Faye G., Feldmann H., Fiers W., Francingues-Gaillard
RA M.-C., Franco L., Frontali L., Fukuhara H., Fuller L.J., Galland P.,
RA Gent M.E., Gigot D., Gilliquet V., Glansdorff N., Goffeau A., Grenson
RA M., Grisanti P., Grivell L.A., de Haan M., Haasemann M., Hatat D.,
RA Hoenicka J., Hegemann J.H., Herbert C.J., Hilger F., Hohmann S.,
RA Hollenberg C.P., Huse K., Iborra F., Indge K.J., Isono K., Jacq C.,
RA Jacquet M., James C.M., Jauniaux J.-C., Jia Y., Jimenez A., Kelly A.,
RA Kleinhans U., Kreisl P., Lanfranchi G., Lewis C., van der Linden C.G.,
RA Lucchini G., Lutzenkirchen K., Maat M.J., Mallet L., Mannhaupt G.,
RA Martegani E., Mathieu A., Maurer C.T.C., McConnell D., McKee R.A.,
RA Messenguy F., Mewes H.-W., Molemans F., Montague M.A., Muzi Falconi
RA M., Navas L., Newlon C.S., Noone D., Pallier C., Panzeri L., Pearson
RA B.M., Perea J., Philippsen P., Pierard A., Planta R.J., Plevani P.,
RA Poetsch B., Pohl F.M., Purnelle B., Ramezani Rad M., Rasmussen S.W.,
RA Raynal A., Remacha M.A., Richterich P., Roberts A.B., Rodriguez F.,
RA Sanz E., Schaaff-Gerstenschlaeger I., Scherens B., Schweitzer B., Shu
RA Y., Skala J., Slonimski P.P., Sor F., Soustelle C., Spiegelberg R.,
RA Stateva L.I., Steensma H.Y., Steiner S., Thierry A., Thireos G.,
RA Tzermia M., Urrestarazu L.A., Valle G., Vetter I., van Vliet-Reedijk
RA J.C., Voet M., Volckaert G., Vreken P., Wang H., Warmington J.R., von
RA Wettstein D., Wicksteed B.L., Wilson C., Wurst H., Xu G., Yoshikawa
RA A., Zimmermann F.K., Sgouros J.G.
RT The complete DNA sequence of yeast chromosome III.
RL Nature 357:38-46(1992)
Size of the chromosome: 316 Kb.
Total number of ORFs currently in Swiss-Prot: 188
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ORF code nomenclature
=====================
YX[L|R]ddd[w|c]
Y = Yeast
X = Letter representing the chromosome
L | R = 'L' is for Left arm; 'R' is for Right arm
ddd = ORF number on the left or right arm
c | w = 'c' is for complementary strand; 'w' is for Watson strand
________________________ ___________ ______ ____ ____________________________________________________________ _______________________________________ ______________________________
Ordered locus name Swiss-Prot Size Gene name and synonyms ORF code synonyms Evidence
entry name AC a.a.
________________________ ___________ ______ ____ ____________________________________________________________ _______________________________________ ______________________________
YCL076W YCH6_YEAST P25602 247 YCL76W Uncertain
YCL075W YCH5_YEAST P25601 146 TY5B YCL75W Uncertain
YCL074W YCH4_YEAST P25600 308 TY5A YCL74W Uncertain
YCL073C GEX1_YEAST P25596 615 GEX1 YCL70C/YCL71C/YCL73C Evidence at protein level
YCL069W VBA3_YEAST P25594 458 VBA3 YCL69W Evidence at protein level
YCL068C YCG8_YEAST P25593 260 YCL68C Uncertain
YCL067C HMAL2_YEAST P0CY09 210 HMLALPHA2 YCL67C Evidence at transcript level
YCL066W HMAL1_YEAST P0CY07 175 HMLALPHA1 YCL66W Evidence at transcript level
YCL065W YCG5_YEAST P37264 122 YCL65W Uncertain
YCL064C STDH_YEAST P25379 360 CHA1 YCL64C Evidence at protein level
YCL063W VAC17_YEAST P25591 423 VAC17 YCL63W/YCL62W Evidence at protein level
YCL061C MRC1_YEAST P25588 1096 MRC1 YCL61C/YCL60C Evidence at protein level
YCL059C KRR1_YEAST P25586 316 KRR1 YCL59C Evidence at protein level
YCL058W-A ADF1_YEAST Q2V2Q1 113 ADF1 Inferred from homology
YCL058C FYV5_YEAST P25585 152 FYV5 YCL58C Predicted
YCL057W PRTD_YEAST P25375 712 PRD1 YCL57W Evidence at protein level
YCL057C-A MOS1_YEAST Q96VH5 97 MOS1; MIO10 Evidence at protein level
YCL056C PEX34_YEAST P25584 144 PEX34 YCL433; YCL56C Evidence at protein level
YCL055W KAR4_YEAST P25583 335 KAR4 YCL432; YCL55W Evidence at protein level
YCL054W SPB1_YEAST P25582 841 SPB1 YCL431; YCL54W Evidence at protein level
YCL052C PBN1_YEAST P25580 416 PBN1 YCL52C Evidence at protein level
YCL051W LRE1_YEAST P25579 583 LRE1 YCL51W Evidence at protein level
YCL050C APA1_YEAST P16550 321 APA1; DTP1 YCL50C Evidence at protein level
YCL049C YCE9_YEAST P25577 312 YCL49C Evidence at protein level
YCL048W-A YC048_YEAST Q2V2Q2 79 Predicted
YCL048W SPS22_YEAST P25380 463 SPS22 YCL48W Inferred from homology
YCL047C POF1_YEAST P25576 258 POF1 YCL47C Evidence at protein level
YCL046W YCE6_YEAST P25575 107 YCL46W Uncertain
YCL045C EMC1_YEAST P25574 760 EMC1 YCL315; YCL45C Evidence at protein level
YCL044C MGR1_YEAST P25573 417 MGR1 YCL314; YCL44C Evidence at protein level
YCL043C PDI_YEAST P17967 522 PDI1; MFP1; TRG1 YCL313; YCL43C Evidence at protein level
YCL042W YCE2_YEAST P25572 119 YCL42W Evidence at protein level
YCL041C YCE1_YEAST P25571 164 YCL41C Uncertain
YCL040W HXKG_YEAST P17709 500 GLK1; HOR3 YCL312; YCL40W Evidence at protein level
YCL039W GID7_YEAST P25569 745 GID7; MOH2 YCL311; YCL39W Evidence at protein level
YCL038C ATG22_YEAST P25568 528 ATG22; AUT4 YCL38C Evidence at protein level
YCL037C SRO9_YEAST P25567 434 SRO9 YCL37C Evidence at protein level
YCL036W GFD2_YEAST P25370 566 GFD2 YCL187; YCL36W Predicted
YCL035C GLRX1_YEAST P25373 110 GRX1 YCL35C Evidence at protein level
YCL034W LSB5_YEAST P25369 354 LSB5 YCL186; YCL34W Evidence at protein level
YCL033C MXR2_YEAST P25566 168 MXR2; MSRB YCL33C Evidence at protein level
YCL032W STE50_YEAST P25344 346 STE50 YCL32W Evidence at protein level
YCL031C RRP7_YEAST P25368 297 RRP7 YCL184; YCL31C Evidence at protein level
YCL030C HIS2_YEAST P00815 799 HIS4 YCL183; YCL30C Evidence at protein level
YCL029C BIK1_YEAST P11709 440 BIK1 YCL29C Evidence at protein level
YCL028W RNQ1_YEAST P25367 405 RNQ1 YCL181; YCL28W Evidence at protein level
YCL027W FUS1_YEAST P11710 512 FUS1 YCL27W Evidence at protein level
YCL026C-B HBN1_YEAST Q96VH4 193 HBN1 YCL027C-A Evidence at protein level
YCL026C-A FRM2_YEAST P37261 193 FRM2 YCLX08C; YCLX8C Evidence at protein level
YCL025C AGP1_YEAST P25376 633 AGP1 YCL25C Evidence at protein level
YCL024W KCC4_YEAST P25389 1037 KCC4 YCL24W Evidence at protein level
YCL023C YCC3_YEAST P25563 115 YCL23C Uncertain
YCL022C YCC2_YEAST P25562 171 YCL22C Uncertain
YCL021W-A YC021_YEAST Q96VH3 125 Predicted
YCL021W YCC1_YEAST P25561 117 YCL21W Uncertain
YCL020W YC21A_YEAST P25383 438 TY2A-C; YCLWTy2-1 GAG YCL20W Evidence at transcript level
YCL019W YC21B_YEAST P25384 1770 TY2B-C; YCLWTy2-1 POL YCL19W Evidence at protein level
YCL018W LEU3_YEAST P04173 364 LEU2 YCL18W Evidence at protein level
YCL017C NFS1_YEAST P25374 497 NFS1; SPL1 YCL17C Evidence at protein level
YCL016C DCC1_YEAST P25559 380 DCC1 YCL16C Evidence at protein level
YCL014W BUD3_YEAST P25558 1636 BUD3 YCL012W; YCL013W; YCL12W; YCL13W; YCL14W Evidence at protein level
YCL012C YCB2_YEAST Q8J0M4 134 YCL011C-A Evidence at protein level
YCL011C GBP2_YEAST P25555 427 GBP2; RLF6 YCL11C Evidence at protein level
YCL010C SGF29_YEAST P25554 259 SGF29 YCL10C Evidence at protein level
YCL009C ILV6_YEAST P25605 309 ILV6 YCL9C Evidence at protein level
YCL008C STP22_YEAST P25604 385 STP22; VPS23 YCL8C Evidence at protein level
YCL007C CWH36_YEAST P25603 130 CWH36 YCL7C Uncertain
YCL005W-A VA0E_YEAST Q3E7B6 73 VMA9; CWH36; LDB10 Evidence at protein level
YCL005W LDB16_YEAST P25587 256 LDB16 YCL5W Evidence at protein level
YCL004W PGPS1_YEAST P25578 521 PGS1; PEL1 YCL003W; YCL3W; YCL4W Evidence at protein level
YCL002C YCA2_YEAST P25565 263 YCL2C Predicted
YCL001W-B YC01B_YEAST Q96VH2 84 Inferred from homology
YCL001W-A YC01A_YEAST P87012 153 Inferred from homology
YCL001W RER1_YEAST P25560 188 RER1 YCL1W Evidence at protein level
YCR001W YCP2_YEAST P25347 104 YCR021; YCR1W Uncertain
YCR002C CDC10_YEAST P25342 322 CDC10 YCR022; YCR2C Evidence at protein level
YCR003W RM32_YEAST P25348 183 MRPL32 YCR041; YCR3W Evidence at protein level
YCR004C YCP4_YEAST P25349 247 YCP4 YCR042; YCR4C Evidence at protein level
YCR005C CISY2_YEAST P08679 460 CIT2 YCR043; YCR5C Evidence at protein level
YCR006C YCP6_YEAST P25350 157 YCR044; YCR6C Uncertain
YCR007C YCP7_YEAST P25354 239 YCR045; YCR7C Evidence at protein level
YCR008W HAL4_YEAST P25333 603 SAT4; HAL4 YCR046; YCR101; YCR8W Evidence at protein level
YCR009C RV161_YEAST P25343 265 RVS161; END6; SPE161 YCR9C Evidence at protein level
YCR010C ADY2_YEAST P25613 283 ADY2; ATO1 YCR10C Evidence at protein level
YCR011C ADP1_YEAST P25371 1049 ADP1 YCR105; YCR11C Evidence at protein level
YCR012W PGK_YEAST P00560 416 PGK1 YCR12W Evidence at protein level
YCR013C YCQ3_YEAST P25614 215 YCR13C Uncertain
YCR014C DPO4_YEAST P25615 582 POL4; POLX YCR14C Evidence at protein level
YCR015C YCQ5_YEAST P25616 317 YCR15C Inferred from homology
YCR016W YCQ6_YEAST P25617 290 YCR16W Evidence at protein level
YCR017C CWH43_YEAST P25618 953 CWH43 YCR17C Evidence at protein level
YCR018C SRD1_YEAST P09007 221 SRD1 YCR18C Evidence at protein level
YCR018C-A YC018_YEAST Q96VH1 84 Uncertain
YCR019W MAK32_YEAST P23060 363 MAK32 YCR19W Predicted
YCR020C PET18_YEAST P25362 215 PET18; HIT2 YCR20C Evidence at protein level
YCR020C-A NAA38_YEAST P23059 88 MAK31; NAA38 YCR20C-A Evidence at protein level
YCR020W-B HTL1_YEAST Q9URQ5 78 HTL1; DRT1 Evidence at protein level
YCR021C HSP30_YEAST P25619 332 HSP30 YCR21C Evidence at protein level
YCR022C YCR2_YEAST P25620 114 YCR22C Uncertain
YCR023C YCR3_YEAST P25351 611 YCR23C; YCR241 Evidence at protein level
YCR024C SYNM_YEAST P25345 492 SLM5 YCR242; YCR24C Evidence at protein level
YCR024C-A PMP1_YEAST P32903 40 PMP1 YCR24C-A Evidence at protein level
YCR024C-B YC204_YEAST Q3E7Z8 88 Evidence at protein level
YCR025C YCR5_YEAST P25352 136 YCR244; YCR25C Uncertain
YCR026C NPP1_YEAST P25353 742 NPP1 YCR246; YCR26C Evidence at protein level
YCR027C RHEB_YEAST P25378 209 RHB1; RSG1 YCR27C Evidence at protein level
YCR028C FEN2_YEAST P25621 512 FEN2 YCR28C Evidence at protein level
YCR028C-A RIM1_YEAST P32445 135 RIM1 YCR28C-A Evidence at protein level
YCR030C SYP1_YEAST P25623 870 SYP1 YCR30C/YCR29C Evidence at protein level
YCR031C RS14A_YEAST P06367 137 RPS14A; CRY1; RPL59 YCR31C Evidence at protein level
YCR032W BPH1_YEAST P25356 2167 BPH1 YCR32W; YCR591; YCR601 Predicted
YCR033W SNT1_YEAST P25357 1226 SNT1 YCR33W; YCR592 Evidence at protein level
YCR034W ELO2_YEAST P25358 347 FEN1; ELO2; GNS1; VBM2 YCR34W; YCR521 Evidence at protein level
YCR035C RRP43_YEAST P25359 394 RRP43 YCR35C; YCR522 Evidence at protein level
YCR036W RBSK_YEAST P25332 333 RBK1 YCR36W; YCR523 Evidence at protein level
YCR037C PHO87_YEAST P25360 923 PHO87 YCR37C; YCR524 Evidence at protein level
YCR038C BUD5_YEAST P25300 642 BUD5 YCR38C; YCR526 Evidence at protein level
YCR038W-A YC038_YEAST Q96VG8 41 Uncertain
YCR039C MTAL2_YEAST P0CY08 210 MATALPHA2; ALPHA-2; MAT2A; MATAL2 YCR39C Evidence at protein level
YCR040W MTAL1_YEAST P0CY06 175 MATALPHA1; ALPHA-1; MAT1A; MATAL1 YCR40W Evidence at protein level
YCR041W YCR41_YEAST P37265 110 YCR41W Uncertain
YCR042C TAF2_YEAST P23255 1407 TAF2; TAF150; TSM1 YCR42C; YCR724 Evidence at protein level
YCR043C YCT3_YEAST P25361 127 YCR43C; YCR725 Evidence at protein level
YCR044C PER1_YEAST P25625 357 PER1; COS16 YCR44C Evidence at protein level
YCR045C RRT12_YEAST P25381 491 RRT12; OSW3 YCR45C Evidence at protein level
YCR045W-A YC045_YEAST Q8TGQ2 116 Uncertain
YCR046C IMG1_YEAST P25626 169 IMG1; PETCR46 YCR46C Evidence at protein level
YCR047C BUD23_YEAST P25627 275 BUD23 YCR47C Evidence at protein level
YCR047W-A YC047_YEAST Q8TGQ1 68 Uncertain
YCR048W ARE1_YEAST P25628 610 ARE1; SAT2 YCR48W Evidence at protein level
YCR049C YCT9_YEAST P25629 148 YCR49C Uncertain
YCR050C YCU0_YEAST P25630 102 YCR50C Predicted
YCR051W YCU1_YEAST P25631 222 YCR51W Evidence at protein level
YCR052W RSC6_YEAST P25632 483 RSC6 YCR52W Evidence at protein level
YCR053W THRC_YEAST P16120 514 THR4 YCR53W Evidence at protein level
YCR054C CTR86_YEAST P25355 563 CTR86 YCR54C Evidence at protein level
YCR057C PWP2_YEAST P25635 923 PWP2; UTP1 YCR55C/YCR57C/YCR58C Evidence at protein level
YCR059C YIH1_YEAST P25637 258 YIH1 YCR59C Evidence at protein level
YCR060W TAH1_YEAST P25638 111 TAH1 YCR60W Evidence at protein level
YCR061W YCV1_YEAST P25639 631 YCR062W; YCR61W; YCR62W; YCR904 Evidence at protein level
YCR063W BUD31_YEAST P25337 157 BUD31; CWC14 YCR63W; YCR903 Evidence at protein level
YCR064C YCV4_YEAST P25640 136 YCR64C Uncertain
YCR065W HCM1_YEAST P25364 564 HCM1 YCR65W; YCR902 Evidence at protein level
YCR066W RAD18_YEAST P10862 487 RAD18 YCR66W Evidence at protein level
YCR067C SED4_YEAST P25365 1065 SED4 YCR67C; YCR901 Evidence at protein level
YCR068W ATG15_YEAST P25641 520 ATG15; AUT5; CVT17 YCR68W Evidence at protein level
YCR069W CYPR_YEAST P25334 318 CPR4; CYP4; SCC3 YCR69W/YCR70W Predicted
YCR071C IMG2_YEAST P25642 146 IMG2 YCR71C Evidence at protein level
YCR072C NLE1_YEAST P25382 515 RSA4 YCR72C Evidence at protein level
YCR073C SSK22_YEAST P25390 1331 SSK22 YCR73C Evidence at protein level
YCR073W-A SOL2_YEAST P37262 315 SOL2 YCRX13W Evidence at protein level
YCR075C ERS1_YEAST P17261 260 ERS1 YCR75C Evidence at protein level
YCR075W-A YC075_YEAST Q3E830 75 Evidence at protein level
YCR076C YCW6_YEAST P25659 250 YCR76C Evidence at protein level
YCR077C PAT1_YEAST P25644 796 PAT1; MRT1 YCR77C Evidence at protein level
YCR079W PP2C6_YEAST P25646 442 PTC6 YCR79C; YCR79W Evidence at protein level
YCR081C-A YC081_YEAST Q8TGQ0 78 Uncertain
YCR081W SRB8_YEAST P25648 1427 SRB8; GIG1; MED12; NUT6; SSN5 YCR81W/YCR80W Evidence at protein level
YCR082W AHC2_YEAST P25649 128 AHC2 YCR82W Evidence at protein level
YCR083W TRX3_YEAST P25372 127 TRX3 YCR83W Evidence at protein level
YCR084C TUP1_YEAST P16649 713 TUP1; AAR1; AER2; AMM1; CYC9; FLK1; SFL2; UMR7 YCR84C Evidence at protein level
YCR085W YCX5_YEAST P25650 117 YCR85W Uncertain
YCR086W CSM1_YEAST P25651 190 CSM1; SPO86 YCR86W Evidence at protein level
YCR087C-A YC16_YEAST P37263 153 YCRX16C Evidence at protein level
YCR087W YCX7_YEAST P25652 171 YCR87W Uncertain
YCR088W ABP1_YEAST P15891 592 ABP1 YCR88W Evidence at protein level
YCR089W FIG2_YEAST P25653 1609 FIG2 YCR1102; YCR89W Evidence at protein level
YCR090C YCY0_YEAST P25654 182 YCR1104; YCR90C Evidence at protein level
YCR091W KIN82_YEAST P25341 720 KIN82; FPK2 YCR1153; YCR91W Evidence at protein level
YCR092C MSH3_YEAST P25336 1018 MSH3 YCR1152; YCR92C Evidence at protein level
YCR093W NOT1_YEAST P25655 2108 CDC39; NOT1; ROS1 YCR1151; YCR93W Evidence at protein level
YCR094W CDC50_YEAST P25656 391 CDC50 YCR94W Evidence at protein level
YCR095C OCA4_YEAST P25366 362 OCA4 YCR131; YCR95C Evidence at protein level
YCR095W-A YC095_YEAST Q3E787 52 Predicted
YCR096C HMRA2_YEAST P0CY13 119 HMRA2 YCR96C Evidence at transcript level
YCR097W HMRA1_YEAST P0CY11 126 HMRA1 YCR97W Evidence at transcript level
YCR097W-A YC097_YEAST Q96VG6 88 Uncertain
YCR098C GIT1_YEAST P25346 518 GIT1 YCR137; YCR98C Evidence at protein level
YCR099C YCY9_YEAST P25657 155 YCR99C Evidence at protein level
YCR100C YCZ0_YEAST P25606 316 Predicted
YCR101C YCZ1_YEAST P25607 182 Predicted
YCR102C YCZ2_YEAST P25608 368 Evidence at protein level
YCR102W-A YC102_YEAST Q96VG5 65 Uncertain
YCR104W PAU3_YEAST P25610 124 PAU3 Inferred from homology
YCR105W ADH7_YEAST P25377 361 ADH7 Evidence at protein level
YCR106W RDS1_YEAST P25611 832 RDS1 Evidence at protein level
YCR107W AAD3_YEAST P25612 363 AAD3 Inferred from homology
YCR108C YC108_YEAST Q3E819 63 Predicted
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