nomlist.txt
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UniProt - Swiss-Prot Protein Knowledgebase
Swiss Institute of Bioinformatics (SIB); Geneva, Switzerland
European Bioinformatics Institute (EBI); Hinxton, United Kingdom
Protein Information Resource (PIR); Washington DC, USA
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Description: Protein nomenclature publication list
Name: nomlist.txt
Release: 2012_05 of 16-May-2012
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This document list papers that are important in defining the nomenclature or
terminology relative to proteins in general and in particular on specific
family or groups of proteins.
An important reference which assembles documents of the various international
commissions on biochemical nomenclature:
Biochemical Nomenclature and Related Documents
A Compendium
Second edition, 1992
International Union of Biochemistry and Molecular Biology
Edited by C. Liebecq
Portland Press, London and Chapel Hill
ISBN 1 85578 005 4
The full publications list of the nomenclature commissions of IUPAC-IUBMB is
available on WWW:
http://www.chem.qmw.ac.uk/iupac/
Another important reference is the "Genetic nomenclature Guide" published
by Trends in Genetics (the current edition is from 1998).
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General nomenclature references
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Nomenclature and symbolism for amino acids and peptides:
IUPAC-IUB Joint Commission on Biochemical Nomenclature (JCBN).
Eur. J. Biochem. 138:9-37(1984).
Corrections: Eur. J. Biochem. 152:1-1(1985).
Eur. J. Biochem. 213:1-3(1993).
http://www.chem.qmw.ac.uk/iupac/AminoAcid/
Nomenclature for multiple forms of enzymes:
IUPAC-IUB Commission on Biochemical Nomenclature (CBN).
Eur. J. Biochem. 82:1-3(1978).
http://www.chem.qmw.ac.uk/iubmb/misc/isoen.html
Nomenclature for multienzymes:
Nomenclature Committee of the International Union of Biochemistry (NC-IUB).
Eur. J. Biochem. 185:485-486(1989).
http://www.chem.qmw.ac.uk/iubmb/misc/menz.html
Nomenclature of protein splicing elements (inteins and exteins):
[Pubmed: 8165123]
Perler F.B., Davis E.O., Dean G.E., Gimble F.S., Jack W.E., Neff N.,
Noren C.J., Thorner J., Belfort M.
Nucleic Acids Res. 22:1125-1127(1994).
Definition of the terms homology and homologous:
[Pubmed: 3621342]
Reeck G.R., de Haen C., Teller D.C., Doolittle R.F., Fitch W.M.,
Dickerson R.E., Chambon P., McLachlan A.D., Margoliash E., Jukes T.H.,
Zuckerlandl E.
Cell 50:667-667(1987).
Dover G.
Cell 51:515-515(1987).
Aboitiz F.
Cell 51:515-516(1987).
Wegnez M.
Cell 51:516-516(1987).
Nomenclature for designating mutations:
[Pubmed: 11479744]
den Dunnen J.T., Antonarakis S.E.
Hum. Genet. 109:121-124(2001).
[Pubmed: 10612815]
den Dunnen J.T., Antonarakis S.E.
Hum. Mutat. 15:7-12(2000).
[Pubmed: 9450896]
Antonarakis S.E.
Hum. Mutat. 11:1-3(1998).
Pubmed=8401532;
Beaudet A.L., Tsui L.-C.
Hum. Mutat. 2:245-248(1993).
Beutler E.
Am. J. Hum. Genet. 53:783-785(1993).
Nomenclature for targeting signals:
Varshavsky A.
Cell 64:13-15(1991).
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Species specific genes nomenclature references
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Arabidopis thaliana genes:
http://www.arabidopsis.org/portals/nomenclature/guidelines.jsp
http://mutant.lse.okstate.edu/genepage/namerule.html
Bacterial gene naming convention:
[Pubmed: 5961488]
Demerec M., Adelberg A.E., Clark A.J., Hartman P.E.
Genetics 54:61-76(1966).
[Pubmed: 5635521]
Demerec M., Adelberg E.A., Clark A.J., Hartman P.E.
J. Gen. Microbiol. 50:1-14(1968).
Caenorhabditis elegans genes:
http://elegans.swmed.edu/Genome/Nomencl2001w.htm
Chicken genes:
http://projects.roslin.ac.uk/chickmap/nomenclature.html
Dictyostelium genes:
http://dictybase.org/Dicty_Info/nomenclature_guidelines.html
Drosophila genes:
http://flybase.bio.indiana.edu/static_pages/docs/nomenclature/nomenclature3.html
Human genes:
Shows T.B., McAlpine P.J., Boucheix C., Collins F.S., Conneally P.M.,
Frezal J., Gershowitz H., Goodfellow P.N., Hall J.G., Issitt P., Jones C.A.,
Knowles B.B., Lewis M., McKusick V.A., Meisler M., Morton N.E.,
Rubinstein P., Schanfield M.S., Schmickel R.D., Skolnick M.H., Spence A.M.,
Sutherland G.
Cytogenet. Cell Genet. 46:11-2(1987).
White J.A., McAlpine P.J., Antonarakis S., Cann H., Eppig J.T., Frazer K.,
Frezal J., Lancet D., Nahmias J., Pearson P., Peters J., Scott H., Spurr N.,
Talbot C. Jr., Povey S.
Genomics 45:468-471(1997).
[Pubmed: 11944974]
Wain H.M., Bruford E.A., Lovering R.C., Lush M.J., Wright M.W., Povey S.
Genomics 79:464-470(2002).
http://www.genenames.org/guidelines.html
Mouse genes:
[Pubmed: 9344685]
Maltais L.J., Blake J.A., Eppig J.T., Davisson M.T.
Genomics 45:471-476(1997).
http://www.informatics.jax.org/mgihome/nomen/
Neurospora crassa genes:
Perkins D.D.
Fungal Genet. Newsl. 46:31-41(1999).
http://www.fgsc.net/fgn46/perkins.htm
Plant genes:
Nomenclature of sequenced plant genes.
Commission on Plant Gene Nomenclature (CPGN)
Plant Mol. Biol. Rep. Vol. 12, Number 2, Supplement, June 1994.
Rat genes:
Levan G., Hedrich H.J., Remmers E.F., Serikawa T., Yoshida M.C.
Mamm. Genome 6:447-448(1995).
http://www.ratmap.org/Nomenclature_Rules.html
Xenopus genes:
http://www.xenbase.org/gene/static/geneNomenclature.jsp
Yeast genes:
http://www.yeastgenome.org/gene_guidelines.shtml
Zebrafish (Zebra danio) genes:
http://zfin.org/zf_info/nomen.html
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Protein families specific nomenclature references
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ADAM metalloproteases:
http://www.people.virginia.edu/~jw7g/Table_of_the_ADAMs.html
Aldehyde dehydrogenases:
[Pubmed: 10780262]
Vasiliou V., Bairoch A., Tipton K.F., Nebert D.W.
Pharmacogenetics 9:421-434(1999).
[Pubmed: 11306055]
Sophos N.A., Pappa A., Ziegler T.L., Vasiliou V.
Chem. Biol. Interact. 130 -132:323-132:337(2001).
Aldo-keto reductases (AKR).
http://www.med.upenn.edu/akr/nomenclature.shtml
Allergens:
IUIS/WHO Allergen Nomenclature Subcommittee.
Bull. World Health Organ. 64:767-770(1986).
Marsh D.G., Goodfriend L., King T.P., Loewenstein H., Platts-Mills T.A.E.
Clin. Allergy 18:201-209(1988).
WHO/IUS Allergen Nomenclature Subcommittee
King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E.,
Thomas W.
ACI News 6/2:38-44(1994).
IUIS/WHO Allergen Nomenclature Subcommittee.
Bull. World Health Organ. 72:797-806(1994).
http://www.allergen.org/Pub.htm
Amyloid fibril proteins:
WHO/IUIS Nomenclature Sub-Committee.
Bull. World Health Organ. 71:105-108(1993).
Annexins:
[Pubmed: 2333094]
Crumpton M.J., Dedman J.R.
Nature 345:212-212(1990).
Arylamine N-acetyltransferases:
[Pubmed: 7773298]
Vatsis K.P., Weber W.W., Bell D.A., Dupret J.-M., Evans D.A., Grant D.M.,
Hein D.W., Lin H.J., Meyer U.A., Relling M.V., Sim E., Suzuki T., Yamazoe Y.
Pharmacogenetics 5:1-17(1995).
[Pubmed: 10862519]
Hein D.W., Grant D.M., Sim E.
Pharmacogenetics 10:291-292(2000).
http://www.louisville.edu/medschool/pharmacology/NAT.html
Bacterial polysaccharide synthesis genes:
[Pubmed: 9004408]
Reeves P.R., Hobbs M., Valvano M.A., Skurnik M., Whitfield C.,
Coplin D., Kido N., Klena J., Maskell D., Raetz C.R., Rick P.D.
Trends Microbiol. 4:495-503(1996).
http://sydney.edu.au/science/molecular_bioscience/BPGD/bpgn_help.htm
17-beta-hydroxysteroid dehydrogenases:
[Pubmed: 10431140]
Peltoketo H., Luu-The V., Simard J., Adamski J.
J. Mol. Endocrinol. 23:1-11(1999).
[Pubmed: 11165003]
Adamski J., Jakob F.J.
Mol. Cell. Endocrinol. 171:1-4(2001).
Calcium channels:
[Pubmed: 1332082]
Spedding M., Paoletti R.
Pharm. Rev. 44:363-376(1992).
[Pubmed: 9254840]
Lory P., Ophoff R.A., Nahmias J.
Hum. Genet. 100:149-150(1997).
[Pubmed: 10774722]
Ertel E.A., Campbell K.P., Harpold M.M., Hofmann F., Mori Y.,
Perez-Reyes E., Schwartz A., Snutch T.P., Tanabe T., Birnbaumer L.,
Tsien R.W., Catterall W.A.
Neuron 25:533-535(2000).
Caspases:
[Pubmed: 8861900]
Alnemri E.S., Livingston D.J., Nicholson D.W., Salvesen G., Thornberry N.A.,
Wong W.W., Yuan J.Y.
Cell 87:171-171(1996).
CD antigens:
[Pubmed: 7902854]
Schlossman S.F., Boumsell L., Gilks W., Harlan J.M., Kishimoto T.,
Morimoto C., Ritz J., Shaw S., Silverstein R.L., Springer T.A.,
Tedder T.F., Todd R.F.
J. Immunol. 152:1-2(1994).
[Pubmed: 9342899]
Bull. World Health Organ. 75:385-387(1997).
[Pubmed: 12723570]
Zola H., Swart B., Boumsell L., Mason D.Y.
J. Immunol. Methods 275:1-8(2003).
[Pubmed: 16020511] [Article from publisher]
Zola H., Swart B., Nicholson I., Aasted B., Bensussan A., Boumsell L.,
Buckley C., Clark G., Drbal K., Engel P., Hart D., Horejsi V.,
Isacke C., Macardle P., Malavasi F., Mason D., Olive D.,
Saalmueller A., Schlossman S.F., Schwartz-Albiez R., Simmons P.,
Tedder T.F., Uguccioni M., Warren H.
Blood 106:3123-3126(2005).
http://www.hlda8.org/
Chemokine receptors:
[Pubmed: 10699158]
Murphy P.M., Baggiolini M., Charo I.F., Hebert C.A., Horuk R.,
Matsushima K., Miller L.H., Oppenheim J.J., Power C.A.
Pharmacol. Rev. 52:145-176(2000).
Complement component C2 variants:
WHO-IUS Nomenclature Sub-Committee.
Bull. WHO 70:527-528(1992).
Complement component C4 allotypes:
[Pubmed: 2088664]
Mauff G., Alper C.A., Dawkins R., Doxiadias G., Giles C.M., Hauptmann G.,
Rittner C., Schneider P.M.
Complement Inflamm. 7:261-268(1990).
WHO-IUS Nomenclature Sub-Committee.
Bull. World Health Organ. 70:531-535(1992).
Complement factor B allotypes:
[Pubmed: 2088663]
Geserick G., Abbal M., Mauff G., Siemens I.
Complement Inflamm. 7:255-260(1990).
WHO-IUS Nomenclature Sub-Committee.
Bull. World Health Organ. 70:541-543(1992).
Connexins:
[Pubmed: 1320430]
Kumar N.M., Gilula N.B.
Semin. Cell Biol. 3:3-16(1992).
Coronaviruses structural proteins:
[Pubmed: 2103094]
Cavanagh D., Brian D.A., Enjuanes L., Holmes K.V., Lai M.M., Laude H.,
Siddell S.G., Spaan W., Taguchi F., Talbot P.J.
Adv. Exp. Med. Biol. 276:1-2(1990).
[Pubmed: 2184577]
Cavanagh D., Brian D.A., Enjuanes L., Holmes K.V., Lai M.M., Laude H.,
Siddell S.G., Spaan W., Taguchi F., Talbot P.J.
Virology 176:306-307(1990).
Dihydropyrimidine dehydrogenase alleles:
[Pubmed: 9918128]
McLeod H.L., Collie-Duguid E.S., Vreken P., Johnson M.R., Wei X., Sapone A.,
Diasio R.B., Fernandez-Salguero P., van Kuilenberg A.B., van Gennip A.H.,
Gonzalez F.J.
Pharmacogenetics 8:455-459(1998).
dnaJ mammalian homologs:
[Pubmed: 11147971]
Ohtsuka K., Hata M.
Cell Stress Chaperones 5:98-112(2000).
Electron-transfer proteins:
Nomenclature Committee of the International Union of Biochemistry (NC-IUB).
Eur. J. Biochem. 200:599-611(1991).
Corrections: Eur. J. Biochem. 213:1-3(1993).
Ephrins and ephrin receptors:
[Pubmed: 9267020]
Eph Nomenclature Committee.
Cell 90:403-404(1997).
http://130.15.90.245/eph_nomeclature.htm
Eukaryotic DNA polymerases:
[Pubmed: 2390988]
Burgers P.M.J., Bambara R.A., Campbell J.L., Chang L.M.S., Downey K.M.,
Huebscher U., Lee M.Y.W.T., Linn S.M., So A.G., Spadari S.
Eur. J. Biochem. 191:617-618(1990).
DNA polymerase delta subunits:
[Pubmed: 11165510]
MacNeill S.A., Baldacci G., Burgers P.M., Huebscher U.
Trends Biochem. Sci. 26:16-17(2001).
Extracellular protein modules:
Bork P., Bairoch A.
Extracellular protein modules: a proposed nomenclature.
Trends Biochem. Sci. 20:Special poster supplement TIBSC02(1995).
Fc receptors (FcR):
IUIS Subcommittee on Nomenclature.
Bull. World Health Organ. 67:449-449(1989).
IUIS/WHO Subcommittee on Nomenclature of Fc receptors.
Bull. World Health Organ. 72:809-809(1994).
Fibrinogen gamma chains:
[Pubmed: 2814930]
Francis C.W., Mosesson M.W.
Thromb. Haemost. 62:813-814(1989).
Fibroblast growth factors:
Ann. N Y Acad. Sci. 638:XIII-XVI(1991).
Flavin-containing monooxygenases:
[Pubmed: 8311461]
Lawton M.P., Cashman J.R., Cresteil T., Dolphin C.T., Elfarra A.A.,
Hines R.N., Hodgson E., Kimura T., Ozols J., Phillips I.R., Philpot R.M.,
Poulsen L.L., Rettie A.E., Shephard E.A., Williams D.E., Ziegler D.M.
Arch. Biochem. Biophys. 308:254-257(1994).
Forkhead domain proteins/genes:
[Pubmed: 10702024]
Kaestner K.H., Knochel W., Martinez D.E.
Genes Dev. 14:142-146(2000).
Galectins (beta-galactoside-binding lectins):
[Pubmed: 8124704]
Barondes S.H., Castronovo V., Cooper D.N.W., Cummings R.D., Drickamer K.,
Feizi T., Gitt M.A., Hirabayashi J., Hughes C., Kasai K.-I., Leffler H.,
Liu F.-T., Lotan R., Mercurio A.M., Monsigny M., Pillai S., Poirer F.,
Raz A., Rigby P.W.J., Rini J.M., Wang J.L.
Cell 76:597-598(1994).
Mouse globin genes:
[Pubmed: 3403963]
Lyon M.F., Barker J.E., Popp R.A.
J. Hered. 79:93-95(1988).
Human glutathione transferases:
[Pubmed: 1540145]
Mannervik B., Awasthi Y.C., Board P.G., Hayes J.D., Di Ilio C.,
Ketterer B., Listowsky I., Morgenstern R., Muramatsu M., Pearson W.R.,
Pickett C.P., Sato K., Widerstein M., Wolf C.R.
Biochem. J. 282:305-306(1992).
Glycosyl hydrolases:
[Pubmed: 1747104]
Henrissat B.
Biochem. J. 280:309-316(1991).
[Pubmed: 8352747]
Henrissat B., Bairoch A.
Biochem. J. 293:781-788(1993).
[Pubmed: 8687420]
Henrissat B., Bairoch A.
Biochem. J. 316:695-696(1996).
http://www.uniprot.org/docs/glycosid
http://www.cazy.org/
Human heat shock genes/proteins:
[Pubmed: 18663603]
Kampinga H.H., Hageman J., Vos M.J., Kubota H., Tanguay R.M., Bruford E.A.,
Cheetham M.E., Chen B., Hightower L.E.;
Cell Stress Chaperones 0:0-0(2008).
HLA system:
[Pubmed: 8505060]
Bodmer J.G., Marsh S.G., Albert E.D., Bodmer W.F., Dupont B., Erlich H.A.,
Mach B., Mayr W.R., Parham P., Sasazuki T., Schreuder G.M.T.,
Strominger J.L., Svejgaard A., Terasaki P.
Immunobiology 187:51-69(1993).
PubMed=10363728
Bodmer J.G., Marsh S.G., Albert E.D., Bodmer W.F., Bontrop R.E.,
Dupont B., Erlich H.A., Hansen J.A., Mach B., Mayr W.R., Parham P.,
Petersdorf E.W., Sasazuki T., Schreuder G.M., Strominger J.L.,
Svejgaard A., Terasaki P.I.
Hum. Immunol. 60:361-395(1999).
[Pubmed: 11295476]
Marsh S.G., Bodmer J.G., Albert E.D., Bodmer W.F., Bontrop R.E.,
Dupont B., Erlich H.A., Hansen J.A., Mach B., Mayr W.R., Parham P.,
Petersdorf E.W., Sasazuki T., Schreuder G.M., Strominger J.L.,
Svejgaard A., Terasaki P.I.
Hum. Immunol. 62:419-468(2001).
http://www.anthonynolan.org.uk/research/hlainformaticsgroup/nomenclature-for-factors-of-the-hla-system-2004
HMG proteins:
[Pubmed: 11246012]
Bustin M.
Trends Biochem. Sci. 26:152-153(2001).
HOX genes:
[Pubmed: 1358459]
Scott M.P.
Cell 71:551-553(1992).
[Pubmed: 8098522]
Scott M.P.
Nucleic Acids Res. 21:1687-1688(1993).
Hrp outer protein (Hop) effector proteins:
[Pubmed: 8736546]
Bogdanove A.J., Beer S.V., Bonas U., Boucher C.A., Collmer A.,
Coplin D.L., Cornelis G.R., Huang H.-C., Hutcheson S.W.,
Panopoulos N.J., Van Gijsegem F.
Mol. Microbiol. 20:681-683(1996).
[Pubmed: 15828679]
Lindeberg M., Stavrinides J., Chang J.H., Alfano J.R., Collmer A.,
Dangl J.L., Greenberg J.T., Mansfield J.W., Guttman D.S.
"Proposed guidelines for a unified nomenclature and phylogenetic
analysis of type III Hop effector proteins in the plant pathogen
Pseudomonas syringae.";
Mol. Plant Microbe Interact. 18:275-282(2005).
IGF binding proteins:
Endocrinology 130:1736-1737(1992).
Immunoglobulins (Ig):
IMGT gene name nomenclature for Ig and TcR of all species.
http://imgt.cines.fr/textes/IMGTScientificChart/Nomenclature/IMGTnomenclature.html
Lefranc M.-P., Lefranc G.
The Immunoglobulin FactsBook
Academic Press, London / San Diego, (2001).
Rowe D.S.
Nature 228:509-511(1970).
Immunochemistry 7:497-500(1970).
Bacillus thuringiensis insecticidial toxins:
[Pubmed: 9729610]
Crickmore N., Zeigler D.R., Feitelson J., Schnepf E., Van Rie J.,
Lereclus D., Baum J., Dean D.H.
Microbiol. Mol. Biol. Rev. 62:807-813(1998).
http://www.biols.susx.ac.uk/Home/Neil_Crickmore/Bt/
Initiation, elongation and termination factors for translation in eukaryotes:
Nomenclature Committee of the International Union of Biochemistry (NC-IUB).
Eur. J. Biochem. 186:1-3(1989).
Human interferon genes:
[Pubmed: 8151140]
Diaz M.O., Bohlander S., Allen G.
J. Interferon Res. 13:443-444(1993).
Interleukins:
WHO/IUIS Nomenclature Subcommittee on Interleukin Designation.
Bull. World Health Organ. 69:483-484(1991).
IUIS/WHO Standing Committee on Interleukin Designation.
Bull. World Health Organ. 72:811-811(1994).
IUIS/WHO Standing Committee on Interleukin Designation.
Bull. World Health Organ. 74:451-452(1996).
IUIS/WHO Standing Committee on Interleukin Designation.
Bull. World Health Organ. 75:175-175(1997).
Interleukin-1 genes:
[Pubmed: 11574262]
Sims J.E., Nicklin M.J., Bazan J.F., Barton J.L., Busfield S.J.,
Ford J.E., Kastelein R.A., Kumar S., Lin H., Mulero J.J., Pan J.,
Pan Y., Smith D.E., Young P.R.
Trends Immunol. 22:536-537(2001).
Kallikrein-kinin genes:
Carretero O.A., Carbini L.A., Scicli A.G.
J. Hypertens. 11:693-697(1993).
Scicli A.G.,Carbini L.A., Carretero O.A.
J. Hypertens. 11:775-780(1993).
Carbini L.A., Scicli A.G., Carretero O.A.
J. Hypertens. 11:893-898(1993).
Human kallikrein gene family:
[Pubmed: 11067830]
Diamandis E.P., Yousef G.M., Clements J., Ashworth L.K., Yoshida S.,
Egelrud T., Nelson P.S., Shiosaka S., Little S., Lilja H.,
Stenman U.H., Rittenhouse H.G., Wain H.
Clin. Chem. 46:1855-1858(2000).
Keratins:
[Pubmed: 16831889] [Article from publisher]
Schweizer J., Bowden P.E., Coulombe P.A., Langbein L., Lane E.B.,
Magin T.M., Maltais L., Omary M.B., Parry D.A., Rogers M.A.,
Wright M.W.;
J. Cell Biol. 174:169-174(2006).
Laminins:
[Pubmed: 7921537]
Burgeson R.E., Chiquet M., Deutzmann R., Ekblom P., Engel J., Kleinman H.,
Martin G.F., Meneguzzi G., Paulsson M., Sanes J., Timpl R., Tryggvason K.,
Yamada Y., Yurchenco P.D.
Matrix Biol. 14:209-211(1994).
Lantibiotics:
de Vos W.M., Jung G., Sahl H.-G.
(In) Nisin and novel antibiotics; Jung G., Sahl H.-G., Eds, pp.457-463,
ESCOM Science Publishers, Leiden, (1991). ISBN: 90-72199-1-1
Mediator complex subunits:
[Pubmed: 15175151] [Article from publisher]
Bourbon H.M., Aguilera A., Ansari A.Z., Asturias F.J., Berk A.J.,
Bjorklund S., Blackwell T.K., Borggrefe T., Carey M., Carlson M.,
Conaway J.W., Conaway R.C., Emmons S.W., Fondell J.D., Freedman L.P.,
Fukasawa T., Gustafsson C.M., Han M., He X., Herman P.K.,
Hinnebusch A.G., Holmberg S., Holstege F.C., Jaehning J.A., Kim Y.J.,
Kuras L., Leutz A., Lis J.T., Meisterernest M., Naar A.M., Nasmyth K.,
Parvin J.D., Ptashne M., Reinberg D., Ronne H., Sadowski I.,
Sakurai H., Sipiczki M., Sternberg P.W., Stillman D.J., Strich R.,
Struhl K., Svejstrup J.Q., Tuck S., Winston F., Roeder R.G.,
Kornberg R.D.
Mol. Cell 14:553-557(2004).
Metallothioneins:
[Pubmed: 1779826]
Kojima Y.
Methods Enzymol. 205:8-10(1991).
Bovine milk-fat globule membrane proteins:
[Pubmed: 10714856]
Mather I.H.
J. Dairy Sci. 83:203-247(2000).
Arabidopsis chloroplast and mitochondrial peptidases:
[Pubmed: 11299370]
Adam Z., Adamska I., Nakabayashi K., Ostersetzer O., Haussuhl K.,
Manuell A., Zheng B., Vallon O., Rodermel S.R., Shinozaki K., Clarke A.K.
Plant Physiol. 125:1912-1918(2001).
Mitochondrial peptidases:
[Pubmed: 8212133]
Kalousek F., Neupert W., Omura T., Schatz G., Schmitz U.K.
Trends Biochem. Sci. 18:249-249(1994).
Mucins:
[Pubmed: 1714883]
Taylor-Papadimitriou J.
Int. J. Cancer 49:1-5(1991).
NF-kappa-B/I-kappa-B family:
[Pubmed: 8224837]
Nabel G.J., Verma I.M.
Genes Dev. 7:2063-2063(1993).
Nuclear receptors:
[Pubmed: 10219237]
Nuclear Receptors Committee
Cell 97:1-20(1999).
Orosomucoid variants:
[Pubmed: 8447119]
Yuasa I., Weidinger S., Umetsu K., Suenaga K., Ishimoto G., Eap B.C.,
Duche J.-C., Baumann P.
Vox Sang. 64:47-55(1993).
P450:
[Pubmed: 7678494]
Nelson D.R., Kamataki T., Waxman D.J., Guengerich F.P., Estrabrook R.W.,
Feyereisen R., Gonzalez F.J., Coon M.J., Gunsalus I.C., Gotoh O., Okuda K.,
Nebert D.W.
DNA Cell Biol. 12:1-51(1993).
CYP2D6 alleles:
[Pubmed: 8807658]
Daly A.K., Brockmoller J., Broly F., Eichelbaum M., Evans W.E.,
Gonzalez F.J., Huang J.D., Idle J.R., Ingelman-Sundberg M., Ishizaki T.,
Jacqz-Aigrain E., Meyer U.A., Nebert D.W., Steen V.M., Wolf C.R.,
Zanger U.M.
Pharmacogenetics 6:193-201(1996).
P450 alleles WWW sites:
http://www.cypalleles.ki.se/
Peptides hormones:
IUPAC-IUB Commission on Biochemical Nomenclature (CBN).
Eur. J. Biochem. 55:485-486(1975).
Peroxisome biogenesis factors:
[Pubmed: 8858157]
Distel B., Erdmann R., Gould S.J., Blobel G., Crane D.I., Cregg J.M.,
Dodt G., Fujiki Y., Goodman J.M., Just W.W., Kiel J.A.K.W., Kunau W.-H.,
Lazarow P.B., Mannaerts G.P., Moser H.W., Osumi T., Rachubinski R.A.,
Roscher A., Subramani S., Tabak H.F., Tsukamoto T., Valle D.,
van der Klei I., van Veldhoven P.P., Veenhuis M.
J. Cell Biol. 135:1-3(1996).
Pharmalogical receptors:
[Pubmed: 1438521]
Kenakin T.P., Bond R.A., Bonner T.I.
Pharm. Rev. 44:351-362(1992).
Phosphodiesterases:
http://depts.washington.edu/pde/Nomenclature.html
Phospholipase D in angiosperms:
[Pubmed: 11876823]
Elias M., Potocky M., Cvrckova F., Zarsky V V.
BMC Genomics 3:2-2(2002).
Phytochromes:
Quail P.H., Briggs W.R., Chory J., Hangarter R.P., Harberd N.P.,
Kendrick R.E., Koornneef M., Parks B., Sharrock R.A., Schaefer E.,
Thompson W.F., Whitelam G.C.
Plant Cell 6:468-471(1994).
Mouse pigmentation genes:
[Pubmed: 10841027]
Jordan S., Beermann F.
Pigment Cell Res. 13:70-71(2000).
Potassium channels:
[Pubmed: 8122320]
Pongs O.
Trends Pharmacol. Sci. 14:435-435(1993).
Protein transport machinery of the mitochondrial membranes:
[Pubmed: 8851659]
Pfanner N., Douglas M.G., Endo T., Hoogenraad N.J., Jensen R.E.,
Meijer M., Neupert M., Schatz G., Schmitz U.K., Shore G.C.
Trends Biochem. Sci. 21:51-52(1996).
PTS system proteins and domains:
Saier M.H. Jr., Reizer J.
J. Bacteriol. 174:1433-1438(1992).
Purinoceptors:
[Pubmed: 7938164]
Fredholm B.B., Abbracchio M.P., Burnstock G., Daly J.W., Harden T.K.,
Jacobson K.A., Leff P., Williams M.
Pharmacol. Rev. 46:143-156(1994).
[Pubmed: 9133776]
Fredholm B.B., Abbracchio M.P., Burnstock G., Dubyak G.R.,
Harden T.K., Jacobson K.A., Schwabe U., Williams M.
Trends Pharmacol. Sci. 18:79-82(1997).
RAS superfamily of GTP-binding proteins:
[Pubmed: 1592203]
Kahn R.A., Der C.J., Bokoch G.M.
FASEB J. 6:2512-2513(1992).
Receptor and ion channels:
1998 Receptors and Ion Channel Nomenclature Supplement
Ninth Edition
IUPHAR, Alexander S.P.H., Peters J.A.
Trends in Pharmacological Sciences
ISSN 1357 485X
Restriction enzymes:
Roberts R.J., Macelis D.
Nucleic Acids Res. 25:248-262(1997).
RNA adenosine deaminases:
[Pubmed: 9292492]
Bass B.L., Nishikura K., Keller W., Seeburg P.H., Emeson R.B.,
O'Connell M.A., Samuel C.E., Herbert A.
RNA 3:947-949(1997)
RTX-toxins:
[Pubmed: 8409915]
Frey J., Bosse J.T., Chang Y.-F., Cullen J.M., Fenwich B., Gerlach G.F.,
Gygi D., Haesebrouck F., Inzana T.J., Jansen R., Kamp E.M., McDonald J.,
McInnes J.I., Mittal K.R., Nicolet J., Rycroft A.N., Segers R.P.A.M.,
Smits M.A., Stenbaek E., Struck D.K., van den Bosch J.F., Willson P.J.,
Young R.
J. Gen. Microbiol. 139:1723-1728(1993).
S100 calcium-binding proteins:
[Pubmed: 7759097]
Schaefer B.W., Wicki R., Engelkamp D., Mattei M.-G., Heizmann C.W.
Genomics 25:638-643(1995).
Scorpion potassium channel toxins:
[Pubmed: 10542442]
Tytgat J., Chandy K.G., Garcia M.L., Gutman G.A.,
Martin-Eauclaire M.F., van der Walt J.J., Possani L.D.
Trends Pharmacol. Sci. 20:444-447(1999).
[Pubmed: 15208019] [Article from publisher]
Rodriguez de la Vega R.C., Possani L.D.
Toxicon 43:865-875(2004).
Semaphorins:
[Pubmed: 10367884]
Semaphorin Nomenclature Committee.
Cell 97:551-552(1999).
Serine/threonine protein phosphatases:
Cohen P.T.W.
Adv. Protein Phosphat. 8:371-376(1994).
Serotonin receptors:
[Pubmed: 15335760]
Branchek T.
Curr. Biol. 3:315-317(1993).
Spider toxins:
[Pubmed: 18619481]
King G.F., Gentz M.C., Escoubas P., Nicholson G.M.
Toxicon 52:264-276(2008).
Spider sphingomyelinases D (SicTox family):
[Pubmed: 19042943]
Binford G.J., Bodner M.R., Cordes M.H., Baldwin K.L., Rynerson M.R.,
Burns S.N., Zobel-Thropp P.A.;
Mol. Biol. Evol. 26:547-566(2009).
Elapid snake three-finger toxins:
[Pubmed: 12962311]
Fry B.G., Wuster W., Kini R.M., Brusic V., Khan A., Venkataraman D.,
Rooney A.P.
J. Mol. Evol. 57:110-129(2003).
T-cell receptors (TcR):
IMGT gene name nomenclature for Ig and TcR of all species.
http://imgt.cines.fr/textes/IMGTScientificChart/Nomenclature/IMGTnomenclature.html
WHO-IUS Nomenclature Sub-Committee on TCR Designation.
Bull. World Health Organ. 71:113-115(1993).
TRP cation channels:
[Pubmed: 11864597]
Montell C., Birnbaumer L., Flockerzi V., Bindels R.J., Bruford E.A.,
Caterina M.J., Clapham D.E., Harteneck C., Heller S., Julius D.,
Kojima I., Mori Y., Penner R., Prawitt D., Scharenberg A.M.,
Schultz G., Shimizu N., Zhu M.X.
Mol. Cell 9:229-231(2002).
UDP-glucuronosyltransferases:
[Pubmed: 1909870]
Burchell B., Nebert D.W., Nelson D.R., Bock K.W., Iyanagi T., Jansen P.L.,
Lancet D., Mulder G.J., Chowdhury J.R., Siest G., Tephly T.R., Mackenzie P.I.
DNA Cell Biol. 10:487-494(1991).
[Pubmed: 9295054]
Mackenzie P.I., Owens I.S., Burchell B., Bock K.W., Bairoch A., Belanger A.,
Fournel-Gigleux S., Green M., Hum D.W., Iyanagi T., Lancet D., Louisot P.,
Magdalou J., Chowdhury J.R., Ritter J.K., Schachter H., Tephly T.R.,
Tipton K.F., Nebert D.W.
Pharmacogenetics 7:255-269(1997).
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