intein.txt
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UniProt - Swiss-Prot Protein Knowledgebase
SIB Swiss Institute of Bioinformatics; Geneva, Switzerland
European Bioinformatics Institute (EBI); Hinxton, United Kingdom
Protein Information Resource (PIR); Washington DC, USA
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Description: Intein-containing proteins: list of entries
Name: intein.txt
Release: 2013_06 of 29-May-2013
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Protein splicing is defined as the excision of an intervening protein
sequence (the INTEIN) from a protein precursor and the concomitant ligation
of the flanking protein fragments (the EXTEINS) to form a mature extein
protein and the free intein. Protein splicing results in a native peptide
bond between the ligated exteins. Extein ligation differentiates protein
splicing from other forms of autoproteolysis. Inteins are named with a 3
letter genus/species designation followed by the extein gene name. If more
than 1 intein is present in an extein gene, the inteins are given a
numerical suffix.
- Number of inteins referenced in Swiss-Prot: 112
- Number of Swiss-Prot entries with one or more inteins: 100
Further information about inteins is available from the following WWW page:
InBase: http://www.neb.com/neb/inteins.html
The second column contains (E) if the intein has a potential or proven
endonuclease activity.
Intein name (E) Swiss-Prot entry
___________________ ____ ____________________
Aae NrdB RIR2_AQUAE (O67475)
Asp dnaB (E) DNAB_NOSS1 (Q8YZA1)
Bsu nrdEB NRDEB_BACSU (O31875)
Ceu clpP CLPP_CHLMO (P42379)
CeV01 dpo DPOL_CEV01 (A7U6F1)
Ctr VMA (E) VATA_CANTR (P38078)
Ddi rpc2 RPC2_DICDI (Q54IZ9)
Gth dnaB DNAB_GUITH (O78411)
Hma polC DP2L_HALMA (Q5UZ40)
Hsp-NRC1 polC DP2L_HALSA (Q9HMX8)
Hwa polC 1 DP2L_HALWD (Q18ER3)
Hwa polC 2 DP2L_HALWD (Q18ER3)
Hwa RFC RFCS_HALWD (Q18E75)
IIV-6 RIR1 RIR1_IIV6 (O55716)
Mbo dnaB (E) DNAB_MYCBO (P59966)
Mbo RecA (E) RECA_MYCBO (P0A5U5)
Mch RecA RECA_MYCCI (Q9F417)
Memar polC DP2L_METMJ (A3CXE7)
Mfa RecA RECA_MYCFA (Q9F416)
Mfl gyrA GYRA_MYCFV (Q49166)
Mfl RecA RECA_MYCFV (Q9F415)
Mga RecA RECA_MYCGS (Q9F414)
Mgo gyrA GYRA_MYCGO (Q49467)
Mhu polC DP2L_METHJ (Q2FSF9)
Mimv polB DPOL_MIMIV (Q5UQR0)
Min DnaB DNAB_MYCIT (Q9F5P4)
Mja gf6p GLMS_METJA (Q58815)
Mja Hel (E) HELS_METJA (Q58524)
Mja hyp1 Y043_METJA (Q60348)
Mja hyp2 RTCB_METJA (Q58095)
Mja infB IF2P_METJA (Q57710)
Mja klbA Y781_METJA (Q58191)
Mja pep PPSA_METJA (Q57962)
Mja pol-1 DPOL_METJA (Q58295)
Mja pol-2 DPOL_METJA (Q58295)
Mja RFC-1 RFCS_METJA (Q58817)
Mja RFC-2 RFCS_METJA (Q58817)
Mja RFC-3 RFCS_METJA (Q58817)
Mja r-Gyr RGYR_METJA (Q58907)
Mja rnr-1 Y832_METJA (Q58242)
Mja rnr-2 Y832_METJA (Q58242)
Mja rpoA1 RPOA1_METJA (Q58445)
Mja rpoA2 RPOA2_METJA (Q58446)
Mja TFIIB (E) TF2B_METJA (Q58192)
Mja UDPGD Y1054_METJA (Q58454)
Mka AtpB VATB_METKA (Q8TUT0)
Mka FusA EF2_METKA (Q8TXJ4)
Mka gyrA GYRA_MYCKA (Q49608)
Mka hyp2 RTCB_METKA (Q8TUS2)
Mkn RFC RFCS_METKA (Q8TZC4)
Mle dnaB DNAB_MYCLE (P46394)
Mle gyrA GYRA_MYCLE (Q57532)
Mle pps1 Y593_MYCLE (Q49689)
Mle RecA RECA_MYCLE (P35901)
Mma gyrA GYRA_MYCMA (O33149)
Msh RecA RECA_MYCSH (Q9F410)
Mth RecA RECA_MYCTH (Q9F407)
Mtu dnaB (E) DNAB_MYCTU (P71715)
Mtu pps1 (E) Y1461_MYCTU (P67125)
Y1496_MYCBO (P67126)
Mtu RecA (E) RECA_MYCTU (P0A5U4)
Mxe gyrA GYRA_MYCXE (P72065)
Pab AtpA VATA_PYRAB (Q9UXU7)
Pab hyp2 RTCB_PYRAB (Q9V168)
Pab infB IF2P_PYRAB (Q9UZK7)
Pab lon LONB_PYRAB (Q9UYC6)
Pab polC DP2L_PYRAB (Q9V2F4)
Pab RFC-1 RFCS_PYRAB (Q9V2G4)
Pab RFC-2 RFCS_PYRAB (Q9V2G4)
Pfu AtpA (E) VATA_PYRFU (Q8U4A6)
Pfu hyp2 RTCB_PYRFU (Q8U0H4)
Pfu infB IF2P_PYRFU (Q8U1R8)
Pfu RFC RFCS_PYRFU (Q8U4J3)
Pfu topA (E) TOP1_PYRFU (O73954)
Pho AtpA (E) VATA_PYRHO (O57728)
Pho hyp2 RTCB_PYRHO (O59245)
Pho infB IF2P_PYRHO (O58822)
Pho lon LONB_PYRHO (O58221)
Pho polC DP2L_PYRHO (O57861)
Pho pol DPOL_PYRHO (O59610)
Pho RadA RADA_PYRHO (O58001)
Pho RFC RFCS_PYRHO (O57852)
Pho r-Gyr RGYR_PYRHO (O58530)
Pko Hel (E) HELS_PYRKO (Q5JGV6)
Pko infB IF2P_PYRKO (Q5JGR9)
Pko pol-1 (E) DPOL_PYRKO (P77933)
Pko pol-2 (E) DPOL_PYRKO (P77933)
Pko polC DP2L_PYRKO (Q5JET0)
Pko RadA RADA_PYRKO (Q5JET4)
Pko RFC RFCS_PYRKO (Q5JHP2)
Pko r-Gyr RGYR_PYRKO (Q6F598)
Ppu dnaB DNAB_PORPU (P51333)
Psp-GDB pol (E) DPOL_PYRSD (Q51334)
Pye dnaB DNAB_PORYE (Q1XDF3)
Rma dnaB (E) DNAB_RHOMR (O30477)
Sce VMA (E) VATA_YEAST (P17255)
SPBc2 bnrdE NRDEB_BPSPB (O64173)
Ssp dnaB DNAB_SYNY3 (Q55418)
Ssp dnaE DPO3A_SYNY3 (P74750)
Ssp gyrB GYRB_SYNY3 (P77966)
Tac AtpA VATA_THEAC (Q9P997)
Tag pol-1 DPOL_THEAG (O33845)
Tag pol-2 DPOL_THEAG (O33845)
Tag pol-3 DPOL_THEAG (O33845)
Tfu pol-1 (E) DPOL_THEFM (P74918)
Tfu pol-2 (E) DPOL_THEFM (P74918)
Thy pol-1 (E) DPOL_THEHY (Q9HH05)
Thy pol-2 (E) DPOL_THEHY (Q9HH05)
Tli pol-1 (E) DPOL_THELI (P30317)
Tli pol-2 (E) DPOL_THELI (P30317)
Tsp-GE8 pol-1 (E) DPOL_THEG8 (Q9HH84)
Tsp-GE8 pol-2 (E) DPOL_THEG8 (Q9HH84)
Tvo AtpA VATA_THEVO (Q97CQ0)
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