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Ontology description

http://purl.uniprot.org/core/ (rdf:type owl:Ontology )
rdfs:labelUniProt RDF schema ontology
rdfs:commentProperties and classes used for protein annotation. xsd:string
owl:versionInfo2017_07 xsd:string

Classes

up:Absorption_Annotation (rdf:type owl:Class )
rdfs:labelAbsorption xsd:string
rdfs:subClassOf up:Biophysicochemical_Annotation
rdfs:commentIndicates the wavelength in nm at which photoreactive proteins such as opsins and DNA photolyases show maximal absorption. xsd:string
rdfs:isDefinedBy up:
up:Active_Site_Annotation (rdf:type owl:Class )
rdfs:labelActive Site xsd:string
rdfs:subClassOf up:Site_Annotation
rdfs:commentAmino acid(s) involved in the activity of an enzyme. xsd:string
rdfs:isDefinedBy up:
rdfs:seeAlsohttp://www.uniprot.org/manual/act_site
up:Allergen_Annotation (rdf:type owl:Class )
rdfs:labelAllergen xsd:string
rdfs:subClassOf up:Annotation
rdfs:commentInformation relevant to allergenic proteins. xsd:string
rdfs:isDefinedBy up:
rdfs:seeAlsohttp://www.uniprot.org/manual/allergenic_properties
up:Alternative_Initiation_Annotation (rdf:type owl:Class )
rdfs:labelAlternative Initiation xsd:string
rdfs:subClassOf up:Alternative_Products_Annotation
rdfs:isDefinedBy up:
up:Alternative_Products_Annotation (rdf:type owl:Class )
rdfs:labelAlternative Products xsd:string
rdfs:subClassOf up:Annotation
rdfs:commentDescription of the existence of related protein sequences produced by alternative splicing of the same gene or by the use of alternative initiation codons. xsd:string
rdfs:isDefinedBy up:
rdfs:seeAlsohttp://www.uniprot.org/manual/alternative_products
up:Alternative_Promoter_Usage_Annotation (rdf:type owl:Class )
rdfs:labelAlternative Promoter Usage xsd:string
rdfs:subClassOf up:Alternative_Products_Annotation
rdfs:isDefinedBy up:
up:Alternative_Sequence_Annotation (rdf:type owl:Class )
rdfs:labelSplice Variant xsd:string
rdfs:subClassOf up:Natural_Variation_Annotation
rdfs:commentDescription of sequence variants produced by alternative splicing. xsd:string
rdfs:isDefinedBy up:
rdfs:seeAlsohttp://www.uniprot.org/manual/var_seq
up:Alternative_Splicing_Annotation (rdf:type owl:Class )
rdfs:labelAlternative Splicing xsd:string
rdfs:subClassOf up:Alternative_Products_Annotation
rdfs:isDefinedBy up:
up:Annotation (rdf:type owl:Class )
rdfs:labelAnnotation xsd:string
rdfs:commentDescription of a resource on a specific topic. xsd:string
rdfs:isDefinedBy up:
up:Attribution (rdf:type owl:Class )
rdfs:labelAttribution xsd:string
rdfs:commentEntity used to attach evidence or provenance to a rdf statement via reification. @en
rdfs:isDefinedBy up:
up:Beta_Strand_Annotation (rdf:type owl:Class )
rdfs:labelStrand xsd:string
rdfs:subClassOf up:Secondary_Structure_Annotation
rdfs:commentBeta strand regions within the experimentally determined protein structure xsd:string
rdfs:isDefinedBy up:
rdfs:seeAlsohttp://www.uniprot.org/manual/strand
up:Binding_Site_Annotation (rdf:type owl:Class )
rdfs:labelBinding Site xsd:string
rdfs:subClassOf up:Site_Annotation
rdfs:commentBinding site for any chemical group (co-enzyme, prosthetic group, etc.). xsd:string
rdfs:isDefinedBy up:
rdfs:seeAlsohttp://www.uniprot.org/manual/binding
up:Biophysicochemical_Annotation (rdf:type owl:Class )
rdfs:labelBiophysicochemical Property xsd:string
rdfs:subClassOf up:Annotation
rdfs:commentBiophysical and physicochemical data such as pH dependence, temperature dependence, kinetic parameters, redox potentials, and maximal absorption. xsd:string
rdfs:isDefinedBy up:
rdfs:seeAlso up:biophysicochemical_properties
up:Biotechnology_Annotation (rdf:type owl:Class )
rdfs:labelBiotechnology xsd:string
rdfs:subClassOf up:Annotation
rdfs:commentDescription of the use of a specific protein in a biotechnological process. xsd:string
rdfs:isDefinedBy up:
rdfs:seeAlsohttp://www.uniprot.org/manual/biotechnological_use
up:Book_Citation (rdf:type owl:Class )
rdfs:labelBook Citation xsd:string
rdfs:subClassOf up:Published_Citation
rdfs:subClassOf Restrict http://purl.uniprot.org/core/name to owl:cardinality 1
rdfs:commentA chapter from a book. xsd:string
rdfs:isDefinedBy up:
up:Calcium_Binding_Annotation (rdf:type owl:Class )
rdfs:labelCalcium Binding xsd:string
rdfs:subClassOf up:Region_Annotation
rdfs:commentExtent of a calcium-binding region. xsd:string
rdfs:isDefinedBy up:
rdfs:seeAlsohttp://www.uniprot.org/manual/ca_bind
up:Catalytic_Activity_Annotation (rdf:type owl:Class )
rdfs:labelCatalytic Activity xsd:string
rdfs:subClassOf up:Annotation
rdfs:commentDescription of the reactions catalyzed by an enzyme. xsd:string
rdfs:isDefinedBy up:
rdfs:seeAlsohttp://www.uniprot.org/manual/catalytic_activity
up:Caution_Annotation (rdf:type owl:Class )
rdfs:labelCaution xsd:string
rdfs:subClassOf up:Annotation
rdfs:commentWarning about possible errors and/or grounds for confusion. xsd:string
rdfs:isDefinedBy up:
rdfs:seeAlsohttp://www.uniprot.org/manual/caution
up:Cellular_Component (rdf:type owl:Class )
rdfs:labelCellular Component
rdfs:subClassOf up:Subcellular_Location
rdfs:isDefinedBy up:
up:Chain_Annotation (rdf:type owl:Class )
rdfs:labelChain xsd:string
rdfs:subClassOf up:Molecule_Processing_Annotation
rdfs:commentExtent of a polypeptide chain in the mature protein. xsd:string
rdfs:isDefinedBy up:
rdfs:seeAlsohttp://www.uniprot.org/manual/chain
up:Citation (rdf:type owl:Class )
rdfs:labelCitation xsd:string
rdfs:subClassOf owl:unionOf (
Restrict http://purl.uniprot.org/core/date to owl:someValuesFrom xsd:date
Restrict http://purl.uniprot.org/core/date to owl:someValuesFrom xsd:gYear
Restrict http://purl.uniprot.org/core/date to owl:someValuesFrom xsd:gYearMonth
)
owl:disjointWith up:Protein
owl:disjointWith up:Range
owl:disjointWith up:Sequence
rdfs:commentDescription of a publication from which data was obtained. xsd:string
rdfs:isDefinedBy up:
rdfs:seeAlsohttp://www.uniprot.org/manual/references
up:Citation_Statement (rdf:type owl:Class )
rdfs:labelCitation Statement xsd:string
rdfs:subClassOf rdf:Statement
rdfs:subClassOf Restrict http://purl.uniprot.org/core/context
rdfs:commentThe relationship between a resource and a citation. xsd:string
rdfs:isDefinedBy up:
up:Cluster (rdf:type owl:Class )
rdfs:labelCluster (UniRef) xsd:string
rdfs:subClassOf owl:Thing
rdfs:subClassOf Restrict http://purl.uniprot.org/core/member to owl:allValuesFrom up:Sequence
owl:disjointWith up:Protein
owl:disjointWith up:Sequence
rdfs:commentCluster of proteins with similar sequences. xsd:string
rdfs:isDefinedBy up:
rdfs:seeAlsohttp://www.uniprot.org/uniref/
up:Cofactor_Annotation (rdf:type owl:Class )
rdfs:labelCofactor xsd:string
rdfs:subClassOf up:Annotation
rdfs:commentDescription of an enzyme cofactor. xsd:string
rdfs:isDefinedBy up:
rdfs:seeAlsohttp://www.uniprot.org/manual/cofactor
up:Coiled_Coil_Annotation (rdf:type owl:Class )
rdfs:labelCoiled-Coil xsd:string
rdfs:subClassOf up:Region_Annotation
rdfs:commentExtent of a coiled-coil region. xsd:string
rdfs:isDefinedBy up:
rdfs:seeAlsohttp://www.uniprot.org/manual/coiled
up:Compositional_Bias_Annotation (rdf:type owl:Class )
rdfs:labelCompositionally Biased Region xsd:string
rdfs:subClassOf up:Region_Annotation
rdfs:commentExtent of a compositionally biased region. xsd:string
rdfs:isDefinedBy up:
rdfs:seeAlsohttp://www.uniprot.org/manual/compbias
up:Concept (rdf:type owl:Class )
rdfs:labelConcept xsd:string
rdfs:subClassOf owl:Class
rdfs:subClassOf Restrict http://purl.uniprot.org/core/replaces to owl:allValuesFrom up:Concept
rdfs:commentA concept used to classify resources. xsd:string
rdfs:isDefinedBy up:
up:Cross-link_Annotation (rdf:type owl:Class )
rdfs:labelCrosslink xsd:string
rdfs:subClassOf up:Modification_Annotation
rdfs:commentPosttranslationally formed amino acid bonds. xsd:string
rdfs:isDefinedBy up:
rdfs:seeAlsohttp://www.uniprot.org/manual/crosslnk
up:DNA (rdf:type owl:Class )
rdfs:labelDNA xsd:string
rdfs:subClassOf up:Molecule
rdfs:isDefinedBy up:
up:Database (rdf:type owl:Class )
rdfs:labelDatabase (description of) xsd:string
rdfs:subClassOf owl:Class
rdfs:commentMetadata for a life science database. xsd:string
rdfs:isDefinedBy up:
rdfs:seeAlsohttp://www.uniprot.org/manual/cross_references_section
up:Developmental_Stage_Annotation (rdf:type owl:Class )
rdfs:labelDevelopmental Stage xsd:string
rdfs:subClassOf up:Annotation
rdfs:commentDescription of the developmentally-specific expression of a protein. xsd:string
rdfs:isDefinedBy up:
rdfs:seeAlsohttp://www.uniprot.org/manual/developmental_stage
up:Disease (rdf:type owl:Class )
rdfs:labelDisease
rdfs:subClassOf owl:Class
rdfs:isDefinedBy up:
rdfs:seeAlsohttp://www.uniprot.org/diseases/
up:Disease_Annotation (rdf:type owl:Class )
rdfs:labelDisease xsd:string
rdfs:subClassOf up:Annotation
rdfs:commentDescription of the diseases associated with a deficiency of a protein. xsd:string
rdfs:isDefinedBy up:
rdfs:seeAlsohttp://www.uniprot.org/manual/involvement_in_disease
up:Disruption_Phenotype_Annotation (rdf:type owl:Class )
rdfs:labelDisruption Phenotype xsd:string
rdfs:subClassOf up:Annotation
rdfs:isDefinedBy up:
rdfs:seeAlsohttp://www.uniprot.org/manual/disruption_phenotype
up:Disulfide_Bond_Annotation (rdf:type owl:Class )
rdfs:labelDisulfide Bond xsd:string
rdfs:subClassOf up:Modification_Annotation
rdfs:commentDescribes residues which are linked by an intra-chain disulfide bond. If the endpoints are identical, the disulfide bond is an interchain one. xsd:string
rdfs:isDefinedBy up:
rdfs:seeAlsohttp://www.uniprot.org/manual/disulfid
up:Domain_Annotation (rdf:type owl:Class )
rdfs:labelDomain xsd:string
rdfs:subClassOf up:Annotation
rdfs:commentDescription of the domain structure of a protein. xsd:string
rdfs:isDefinedBy up:
rdfs:seeAlsohttp://www.uniprot.org/manual/domain_cc
up:Domain_Assignment_Statement (rdf:type owl:Class )
rdfs:labelDomain Assignment Statement xsd:string
rdfs:subClassOf rdf:Statement
rdfs:commentThe relationship between a protein and a protein domain. xsd:string
rdfs:isDefinedBy up:
up:Domain_Extent_Annotation (rdf:type owl:Class )
rdfs:labelDomain Extent xsd:string
rdfs:subClassOf up:Region_Annotation
rdfs:commentExtent of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold. xsd:string
rdfs:isDefinedBy up:
rdfs:seeAlsohttp://www.uniprot.org/manual/domain
up:Electronic_Citation (rdf:type owl:Class )
rdfs:labelElectronic Citation xsd:string
rdfs:subClassOf up:Published_Citation
rdfs:subClassOf Restrict http://purl.uniprot.org/core/name to owl:cardinality 1
rdfs:commentAn electronic publication. xsd:string
rdfs:isDefinedBy up:
up:Endpoint_Statement (rdf:type owl:Class )
rdfs:labelEndpoint Statement xsd:string
rdfs:subClassOf rdf:Statement
rdfs:commentMetadata for an endpoint of a range on a sequence. xsd:string
rdfs:isDefinedBy up:
up:Enzyme (rdf:type owl:Class )
rdfs:labelEnzyme xsd:string
rdfs:subClassOf owl:Class
rdfs:subClassOf Restrict http://purl.uniprot.org/core/replacedBy to owl:allValuesFrom up:Enzyme
rdfs:subClassOf Restrict http://purl.uniprot.org/core/replaces to owl:allValuesFrom up:Enzyme
rdfs:commentA specific catalytic activity, defined by the Enzyme Commission of the Nomenclature Committee of the International Union of Biochemistry and Molecular Biology (IUBMB). xsd:string
rdfs:isDefinedBy up:
rdfs:seeAlsohttp://www.expasy.org/enzyme/
up:Enzyme_Regulation_Annotation (rdf:type owl:Class )
rdfs:labelEnzyme Regulation xsd:string
rdfs:subClassOf up:Annotation
rdfs:commentDescription of an enzyme regulatory mechanism. xsd:string
rdfs:isDefinedBy up:
rdfs:seeAlsohttp://www.uniprot.org/manual/enzyme_regulation
up:Erroneous_Gene_Model_Prediction_Annotation (rdf:type owl:Class )
rdfs:labelErroneous Gene Model Prediction xsd:string
rdfs:subClassOf up:Sequence_Caution_Annotation
rdfs:isDefinedBy up:
up:Erroneous_Initiation_Annotation (rdf:type owl:Class )
rdfs:labelErroneous Initiation xsd:string
rdfs:subClassOf up:Sequence_Caution_Annotation
rdfs:isDefinedBy up:
up:Erroneous_Termination_Annotation (rdf:type owl:Class )
rdfs:labelErroneous Termination xsd:string
rdfs:subClassOf up:Sequence_Caution_Annotation
rdfs:isDefinedBy up:
up:Erroneous_Translation_Annotation (rdf:type owl:Class )
rdfs:labelErroneous Translation xsd:string
rdfs:subClassOf up:Sequence_Caution_Annotation
rdfs:isDefinedBy up:
up:Experimental_Information_Annotation (rdf:type owl:Class )
rdfs:labelExperimental Information xsd:string
rdfs:subClassOf up:Sequence_Annotation
rdfs:isDefinedBy up:
up:External_Sequence (rdf:type owl:Class )
rdfs:labelExternal Sequence xsd:string
rdfs:subClassOf up:Known_Sequence
rdfs:commentThe protein described in the linked record is an alternative splice form of the same gene product as described in this record. The function between the two isoforms is highly divergent. xsd:string
rdfs:isDefinedBy up:
rdfs:seeAlsohttp://www.uniprot.org/manual/alternative_products
up:Family_Membership_Statement (rdf:type owl:Class )
rdfs:labelFamily Membership Statement xsd:string
rdfs:subClassOf rdf:Statement
rdfs:commentThe relationship between a protein and a protein family. xsd:string
rdfs:isDefinedBy up:
up:Frameshift_Annotation (rdf:type owl:Class )
rdfs:labelFrameshift xsd:string
rdfs:subClassOf up:Sequence_Caution_Annotation
rdfs:isDefinedBy up:
up:Function_Annotation (rdf:type owl:Class )
rdfs:labelFunction xsd:string
rdfs:subClassOf up:Annotation
rdfs:commentGeneral description of the functions of a protein. xsd:string
rdfs:isDefinedBy up:
rdfs:seeAlsohttp://www.uniprot.org/manual/function
up:Gene (rdf:type owl:Class )
rdfs:labelGene xsd:string
rdfs:subClassOf owl:Thing
rdfs:subClassOf skos:Concept
rdfs:subClassOf Restrict http://www.w3.org/2004/02/skos/core#prefLabel owl:onClass up:Gene
rdfs:isDefinedBy up:
up:Genomic_DNA (rdf:type owl:Class )
rdfs:labelGenomic DNA xsd:string
rdfs:subClassOf up:DNA
rdfs:isDefinedBy up:
up:Genomic_RNA (rdf:type owl:Class )
rdfs:labelGenomic RNA xsd:string
rdfs:subClassOf up:RNA
rdfs:isDefinedBy up:
up:Glycosylation_Annotation (rdf:type owl:Class )
rdfs:labelGlycosylation Site xsd:string
rdfs:subClassOf up:Modification_Annotation
rdfs:commentDescribes the occurrence of the attachment of a glycan (mono- or polysaccharide) to a residue of a protein. xsd:string
rdfs:isDefinedBy up:
rdfs:seeAlsohttp://www.uniprot.org/manual/carbohyd
up:Helix_Annotation (rdf:type owl:Class )
rdfs:labelHelix xsd:string
rdfs:subClassOf up:Secondary_Structure_Annotation
rdfs:commentHelical regions within the experimentally determined protein structure xsd:string
rdfs:isDefinedBy up:
rdfs:seeAlsohttp://www.uniprot.org/manual/helix
up:Induction_Annotation (rdf:type owl:Class )
rdfs:labelInduction xsd:string
rdfs:subClassOf up:Annotation
rdfs:commentDescription of the compounds or conditions that stimulate the synthesis of a protein. xsd:string
rdfs:isDefinedBy up:
rdfs:seeAlsohttp://www.uniprot.org/manual/induction
up:Initiator_Methionine_Annotation (rdf:type owl:Class )
rdfs:labelInitiator Methionine xsd:string
rdfs:subClassOf up:Molecule_Processing_Annotation
rdfs:commentIndicates that the initiator methionine has been cleaved off and is not shown in the sequence. xsd:string
rdfs:isDefinedBy up:
rdfs:seeAlsohttp://www.uniprot.org/manual/init_met
up:Interaction (rdf:type owl:Class )
rdfs:labelInteraction xsd:string
rdfs:commentDescription of a protein-protein interaction. xsd:string
rdfs:isDefinedBy up:
rdfs:seeAlsohttp://www.uniprot.org/manual/binary_interactions
up:Intramembrane_Annotation (rdf:type owl:Class )
rdfs:labelINTRAMEM xsd:string
rdfs:subClassOf up:Region_Annotation
rdfs:commentExtent of a region located in a membrane without crossing it xsd:string
rdfs:isDefinedBy up:
rdfs:seeAlsohttp://www.uniprot.org/manual/Intramembrane
up:Journal (rdf:type owl:Class )
rdfs:labelJournal xsd:string
rdfs:subClassOf owl:Thing
rdfs:isDefinedBy up:
up:Journal_Citation (rdf:type owl:Class )
rdfs:labelJournal Citation xsd:string
rdfs:subClassOf up:Published_Citation
rdfs:subClassOf Restrict http://purl.uniprot.org/core/name to owl:cardinality 1
rdfs:commentAn article published in a journal. xsd:string
rdfs:isDefinedBy up:
up:Kinetics_Annotation (rdf:type owl:Class )
rdfs:labelKinetics xsd:string
rdfs:subClassOf up:Biophysicochemical_Annotation
rdfs:commentMentions the Michaelis-Menten constant (KM) and maximal velocity (Vmax) of enzymes. xsd:string
rdfs:isDefinedBy up:
up:Known_Sequence (rdf:type owl:Class )
rdfs:labelKnown Sequence xsd:string
rdfs:subClassOf up:Sequence
rdfs:isDefinedBy up:
rdfs:seeAlsohttp://www.uniprot.org/manual/sequences
up:Lipidation_Annotation (rdf:type owl:Class )
rdfs:labelLipid Binding xsd:string
rdfs:subClassOf up:Modification_Annotation
rdfs:commentCovalent binding of a lipid moiety. xsd:string
rdfs:isDefinedBy up:
rdfs:seeAlsohttp://www.uniprot.org/manual/lipid
up:MRNA (rdf:type owl:Class )
rdfs:labelmRNA xsd:string
rdfs:subClassOf up:RNA
rdfs:isDefinedBy up:
up:Mass_Measurement_Method (rdf:type owl:Class )
rdfs:labelMass Measurement xsd:string
rdfs:subClassOf up:Method
rdfs:commentAn experimental method for measuring the mass of a molecule. xsd:string
rdfs:seeAlsohttp://dbpedia.org/resource/Mass_spectrometry
rdfs:isDefinedBy up:
up:Mass_Spectrometry_Annotation (rdf:type owl:Class )
rdfs:labelMass xsd:string
rdfs:subClassOf up:Experimental_Information_Annotation
rdfs:subClassOf Restrict http://purl.uniprot.org/core/method to owl:maxCardinality 1
rdfs:subClassOf Restrict http://purl.uniprot.org/core/method to owl:allValuesFrom up:Mass_Measurement_Method
rdfs:commentIndicates the mass of a sequence determined by mass spectrometry. xsd:string
rdfs:isDefinedBy up:
rdfs:seeAlsohttp://www.uniprot.org/manual/mass_spectrometry
up:Member_Of_Redudant_Proteome (rdf:type owl:Class )
rdfs:labelMember Of Redudant Proteome xsd:string
rdfs:subClassOf up:Obsolete_Protein
rdfs:commentThis entry was obsoleted because its sequence belongs to a redundant protoeome xsd:string
rdfs:isDefinedBy up:
rdfs:seeAlsohttp://www.uniprot.org/help/proteome_redundancy
up:Metal_Binding_Annotation (rdf:type owl:Class )
rdfs:labelMetal Ion Binding Site xsd:string
rdfs:subClassOf up:Site_Annotation
rdfs:commentBinding site for a metal ion. xsd:string
rdfs:isDefinedBy up:
rdfs:seeAlsohttp://www.uniprot.org/manual/metal
up:Method (rdf:type owl:Class )
rdfs:labelMethod xsd:string
rdfs:commentAn experimental method. xsd:string
rdfs:isDefinedBy up:
up:Modification_Annotation (rdf:type owl:Class )
rdfs:labelModification xsd:string
rdfs:subClassOf up:Sequence_Annotation
rdfs:commentDescribes amino acid modifications, post pre- and post-translational. xsd:string
rdfs:isDefinedBy up:
up:Modified_Residue_Annotation (rdf:type owl:Class )
rdfs:labelModified Residue xsd:string
rdfs:subClassOf up:Modification_Annotation
rdfs:commentPosttranslational modification of a residue. xsd:string
rdfs:isDefinedBy up:
rdfs:seeAlsohttp://www.uniprot.org/manual/mod_res
up:Modified_Sequence (rdf:type owl:Class )
rdfs:labelModified Sequence xsd:string
rdfs:subClassOf up:Known_Sequence
rdfs:subClassOf Restrict http://purl.uniprot.org/core/basedOn to owl:allValuesFrom up:Simple_Sequence
rdfs:subClassOf Restrict http://purl.uniprot.org/core/modification to owl:allValuesFrom up:Alternative_Sequence_Annotation
rdfs:isDefinedBy up:
up:Molecule (rdf:type owl:Class )
rdfs:labelMolecule xsd:string
rdfs:commentA biological molecule. xsd:string
rdfs:isDefinedBy up:
up:Molecule_Processing_Annotation (rdf:type owl:Class )
rdfs:labelMolecule Processing xsd:string
rdfs:subClassOf up:Sequence_Annotation
rdfs:isDefinedBy up:
up:Motif_Annotation (rdf:type owl:Class )
rdfs:labelMotif xsd:string
rdfs:subClassOf up:Region_Annotation
rdfs:commentShort (<=20 amino acids) sequence motif of biological interest. xsd:string
rdfs:isDefinedBy up:
rdfs:seeAlsohttp://www.uniprot.org/manual/motif
up:Mutagenesis_Annotation (rdf:type owl:Class )
rdfs:labelMutagenesis Site xsd:string
rdfs:subClassOf up:Experimental_Information_Annotation
rdfs:commentSite which has been experimentally altered. xsd:string
rdfs:isDefinedBy up:
rdfs:seeAlsohttp://www.uniprot.org/manual/mutagen
up:NP_Binding_Annotation (rdf:type owl:Class )
rdfs:labelNucleotide Phosphate Binding xsd:string
rdfs:subClassOf up:Region_Annotation
rdfs:commentExtent of a nucleotide phosphate-binding region. xsd:string
rdfs:isDefinedBy up:
rdfs:seeAlsohttp://www.uniprot.org/manual/dna_bind
up:Natural_Variant_Annotation (rdf:type owl:Class )
rdfs:labelSequence Variant xsd:string
rdfs:subClassOf up:Natural_Variation_Annotation
rdfs:commentAuthors report that sequence variants exist. xsd:string
rdfs:isDefinedBy up:
rdfs:seeAlsohttp://www.uniprot.org/manual/variant
up:Natural_Variation_Annotation (rdf:type owl:Class )
rdfs:labelNatural Variation xsd:string
rdfs:subClassOf up:Sequence_Annotation
rdfs:isDefinedBy up:
up:Non-adjacent_Residues_Annotation (rdf:type owl:Class )
rdfs:labelNon-consecutive Residues xsd:string
rdfs:subClassOf up:Experimental_Information_Annotation
rdfs:commentIndicates that two residues in a sequence are not consecutive and that there are a number of unsequenced residues between them. xsd:string
rdfs:isDefinedBy up:
rdfs:seeAlsohttp://www.uniprot.org/manual/non_cons
up:Non-standard_Residue_Annotation (rdf:type owl:Class )
rdfs:labelNon standard residue xsd:string
rdfs:subClassOf up:Modification_Annotation
rdfs:commentDescribes the occurrence of a non standard residue in the sequence record. xsd:string
rdfs:isDefinedBy up:
rdfs:seeAlsohttp://www.uniprot.org/manual/non_std
up:Non-terminal_Residue_Annotation (rdf:type owl:Class )
rdfs:labelNon-terminal Residue xsd:string
rdfs:subClassOf up:Experimental_Information_Annotation
rdfs:commentThe residue at an extremity of the sequence is not the terminal residue. xsd:string
rdfs:isDefinedBy up:
rdfs:seeAlsohttp://www.uniprot.org/manual/non_ter
up:Non_Self_Interaction (rdf:type owl:Class )
rdfs:labelNon self interaction xsd:string
rdfs:subClassOf up:Interaction
rdfs:commentDescription of a non self protein-protein interaction. xsd:string
rdfs:isDefinedBy up:
rdfs:seeAlsohttp://www.uniprot.org/manual/binary_interactions
up:Not_Obsolete (rdf:type owl:Class )
rdfs:labelNot Obsolete xsd:string
owl:equivalentClass Restrict http://purl.uniprot.org/core/obsolete owl:HasValue false
owl:disjointWith up:Obsolete
rdfs:commentA class introduced to group all records that are currently in the database. xsd:string
rdfs:isDefinedBy up:
up:Not_Obsolete_Protein (rdf:type owl:Class )
rdfs:labelNot obsolete protein (record) xsd:string
rdfs:subClassOf up:Not_Obsolete
rdfs:subClassOf up:Protein
rdfs:subClassOf Restrict http://purl.uniprot.org/core/sequence to owl:someValuesFrom up:Simple_Sequence
rdfs:subClassOf Restrict http://purl.uniprot.org/core/organism to owl:cardinality 1
rdfs:subClassOf Restrict http://purl.uniprot.org/core/existence to owl:someValuesFrom up:Protein_Existence
rdfs:isDefinedBy up:
up:Not_Obsolete_Taxon (rdf:type owl:Class )
rdfs:labelNot obsolete taxon (record) xsd:string
rdfs:subClassOf up:Not_Obsolete
rdfs:subClassOf up:Taxon
rdfs:subClassOf Restrict http://purl.uniprot.org/core/scientificName to owl:cardinality 1
rdfs:isDefinedBy up:
up:Nucleotide_Binding_Annotation (rdf:type owl:Class )
rdfs:labelDNA Binding xsd:string
rdfs:subClassOf up:Region_Annotation
rdfs:commentExtent of a DNA-binding region. xsd:string
rdfs:isDefinedBy up:
rdfs:seeAlsohttp://www.uniprot.org/manual/np_bind
up:Nucleotide_Mapping_Statement (rdf:type owl:Class )
rdfs:labelNucleotide Mapping Statement xsd:string
rdfs:subClassOf rdf:Statement
rdfs:commentThe relationship between a protein and a nucleotide sequence. xsd:string
rdfs:isDefinedBy up:
up:Nucleotide_Resource (rdf:type owl:Class )
rdfs:labelNucleotide Resource xsd:string
owl:equivalentClass Restrict http://purl.uniprot.org/core/locatedOn to owl:minCardinality 1
rdfs:subClassOf up:Resource
rdfs:commentA resource that descripes a nucleotide sequence. xsd:string
rdfs:isDefinedBy up:
up:Observation_Citation (rdf:type owl:Class )
rdfs:labelObservation Citation xsd:string
rdfs:subClassOf up:Unpublished_Citation
rdfs:commentCitation of an unpublished result. xsd:string
rdfs:isDefinedBy up:
up:Obsolete (rdf:type owl:Class )
owl:equivalentClass Restrict http://purl.uniprot.org/core/obsolete owl:HasValue true
rdfs:commentThe class of all obsolete records in the database (i.e. records that where once published but are now removed). xsd:string
rdfs:isDefinedBy up:
up:Obsolete_Protein (rdf:type owl:Class )
rdfs:subClassOf up:Obsolete
rdfs:subClassOf up:Protein
rdfs:isDefinedBy up:
rdfs:seeAlsohttp://www.uniprot.org/faq/11
up:Obsolete_Taxon (rdf:type owl:Class )
rdfs:subClassOf up:Obsolete
rdfs:subClassOf up:Taxon
rdfs:commentTaxa are occasionally removed from the taxonomy database (particularly internal nodes, during a taxonomic revision) – these taxids are deleted, and are not reused. xsd:string
rdfs:isDefinedBy up:
rdfs:seeAlsohttp://www.ncbi.nlm.nih.gov/books/NBK54428/
up:Organelle (rdf:type owl:Class )
rdfs:labelOrganelle
rdfs:isDefinedBy up:
up:Orientation (rdf:type owl:Class )
rdfs:labelOrientation
rdfs:subClassOf up:Subcellular_Location
rdfs:isDefinedBy up:
up:Other_DNA (rdf:type owl:Class )
rdfs:labelOther DNA xsd:string
rdfs:subClassOf up:DNA
rdfs:isDefinedBy up:
up:Other_RNA (rdf:type owl:Class )
rdfs:labelOther RNA xsd:string
rdfs:subClassOf up:RNA
rdfs:isDefinedBy up:
up:PH_Dependence_Annotation (rdf:type owl:Class )
rdfs:labelpH Dependence xsd:string
rdfs:subClassOf up:Biophysicochemical_Annotation
rdfs:commentDescribes the optimum pH for enzyme activity and/or the variation of enzyme activity with pH variation. xsd:string
rdfs:isDefinedBy up:
up:PTM_Annotation (rdf:type owl:Class )
rdfs:labelPTM xsd:string
rdfs:subClassOf up:Annotation
rdfs:commentDescription of a posttranslational modification. xsd:string
rdfs:isDefinedBy up:
rdfs:seeAlsohttp://www.uniprot.org/manual/post-translational_modification
up:Part (rdf:type owl:Class )
rdfs:labelProtein part xsd:string
rdfs:subClassOf owl:Thing
rdfs:commentDescription of a part of a protein. xsd:string
rdfs:isDefinedBy up:
rdfs:seeAlsohttp://www.uniprot.org/manual/protein_names
up:Participant (rdf:type owl:Class )
rdfs:labelInteraction participant xsd:string
rdfs:commentA participant in a protein-protein interaction. xsd:string
rdfs:isDefinedBy up:
rdfs:seeAlsohttp://www.uniprot.org/manual/binary_interactions
up:Patent_Citation (rdf:type owl:Class )
rdfs:labelPatent Citation xsd:string
rdfs:subClassOf up:Published_Citation
rdfs:commentA patent application. xsd:string
rdfs:isDefinedBy up:
up:Pathway (rdf:type owl:Class )
rdfs:labelPathwayhttp;//www.w3.org/2001/XMLSchema#string
rdfs:subClassOf owl:Class
rdfs:commentA hierarchical discription of a metabolic pathway. xsd:string
rdfs:isDefinedBy up:
rdfs:seeAlsohttp://www.grenoble.prabi.fr/obiwarehouse/unipathway
rdfs:seeAlsohttp://www.uniprot.org/manual/pathway
up:Pathway_Annotation (rdf:type owl:Class )
rdfs:labelPathway annotation xsd:string
rdfs:subClassOf up:Annotation
rdfs:commentDescription of the metabolic pathways with which a protein is associated. xsd:string
rdfs:isDefinedBy up:
rdfs:seeAlsohttp://www.uniprot.org/manual/pathway
up:Peptide_Annotation (rdf:type owl:Class )
rdfs:labelPeptide xsd:string
rdfs:subClassOf up:Molecule_Processing_Annotation
rdfs:commentExtent of a released active peptide. xsd:string
rdfs:isDefinedBy up:
rdfs:seeAlsohttp://www.uniprot.org/manual/peptide
up:Pharmaceutical_Annotation (rdf:type owl:Class )
rdfs:labelPharmaceutical xsd:string
rdfs:subClassOf up:Annotation
rdfs:commentDescription of the use of a protein as a pharmaceutical drug. xsd:string
rdfs:isDefinedBy up:
rdfs:seeAlsohttp://www.uniprot.org/manual/pharmaceutical_use
up:Plasmid (rdf:type owl:Class )
rdfs:labelPlasmid xsd:string
rdfs:commentDescription of a Plasmid xsd:string
rdfs:isDefinedBy up:
up:Polymorphism_Annotation (rdf:type owl:Class )
rdfs:labelPolymorphism xsd:string
rdfs:subClassOf up:Annotation
rdfs:commentDescription of polymorphisms. xsd:string
rdfs:isDefinedBy up:
rdfs:seeAlsohttp://www.uniprot.org/manual/polymorphism
up:Propeptide_Annotation (rdf:type owl:Class )
rdfs:labelPropeptide xsd:string
rdfs:subClassOf up:Molecule_Processing_Annotation
rdfs:commentExtent of a propeptide. xsd:string
rdfs:isDefinedBy up:
rdfs:seeAlsohttp://www.uniprot.org/manual/propep
up:Protein (rdf:type owl:Class )
rdfs:labelProtein xsd:string
rdfs:subClassOf owl:Thing
rdfs:subClassOf Restrict http://purl.uniprot.org/core/replacedBy to owl:allValuesFrom up:Protein
rdfs:subClassOf Restrict http://purl.uniprot.org/core/replaces to owl:allValuesFrom up:Protein
owl:disjointWith up:Sequence
rdfs:commentDescription of a protein. xsd:string
rdfs:isDefinedBy up:
rdfs:seeAlsohttp://www.uniprot.org/help/uniprotkb
up:Protein_Existence (rdf:type owl:Class )
rdfs:labelProtein existence evidence xsd:string
owl:equivalentClassowl:oneOf ( http://purl.uniprot.org/core/Predicted_Existence , http://purl.uniprot.org/core/Evidence_at_Transcript_Level_Existence , http://purl.uniprot.org/core/Uncertain_Existence , http://purl.uniprot.org/core/Inferred_from_Homology_Existence , http://purl.uniprot.org/core/Evidence_at_Protein_Level_Existence )
rdfs:isDefinedBy up:
up:Proteome (rdf:type owl:Class )
rdfs:labelProteome xsd:string
rdfs:commentDescription of a proteome. xsd:string
rdfs:isDefinedBy up:
rdfs:seeAlsohttp://www.uniprot.org/help/proteome
up:Proteome_Component (rdf:type owl:Class )
rdfs:labelProteome_Component xsd:string
rdfs:subClassOf owl:Thing
rdfs:commentThe component of a proteome. e.g. Chromosome, Contig or Plasmid xsd:string
rdfs:isDefinedBy up:
rdfs:seeAlsohttp://www.uniprot.org/help/proteome
up:Published_Citation (rdf:type owl:Class )
rdfs:labelPublished Citation xsd:string
rdfs:subClassOf up:Citation
owl:disjointWith up:Unpublished_Citation
rdfs:isDefinedBy up:
rdfs:seeAlsohttp://www.uniprot.org/manual/references
up:RNA (rdf:type owl:Class )
rdfs:labelRNA xsd:string
rdfs:subClassOf up:Molecule
rdfs:isDefinedBy up:
up:RNA_Editing_Annotation (rdf:type owl:Class )
rdfs:labelRNA Editing xsd:string
rdfs:subClassOf up:Annotation
rdfs:commentDescription of any type of RNA editing that leads to one or more amino acid changes. xsd:string
rdfs:isDefinedBy up:
rdfs:seeAlsohttp://www.uniprot.org/manual/rna_editing
up:Range (rdf:type owl:Class )
rdfs:labelRange xsd:string
owl:equivalentClass owl:unionOf (
owl:intersectionOf Restrict http://purl.uniprot.org/core/begin owl:onDataRange xsd:int
Restrict http://purl.uniprot.org/core/end owl:onDataRange xsd:int to owl:maxQualifiedCardinality 1
owl:intersectionOf Restrict http://purl.uniprot.org/core/end owl:onDataRange xsd:int
Restrict http://purl.uniprot.org/core/begin owl:onDataRange xsd:int to owl:maxQualifiedCardinality 1
)
rdfs:commentA range of amino acids on a protein sequence. xsd:string
rdfs:isDefinedBy up:
up:Rank (rdf:type owl:Class )
rdfs:labelTaxon rank xsd:string
rdfs:commentA rank of a taxon. xsd:string
rdfs:isDefinedBy up:
up:Redox_Potential_Annotation (rdf:type owl:Class )
rdfs:labelRedox Potential xsd:string
rdfs:subClassOf up:Biophysicochemical_Annotation
rdfs:commentReports the value of the standard (midpoint) oxido-reduction potential(s) for electron transport proteins. xsd:string
rdfs:isDefinedBy up:
up:Reference_Proteome (rdf:type owl:Class )
rdfs:labelReference_Proteome xsd:string
rdfs:subClassOf up:Proteome
rdfs:commentSome proteomes have been (manually and algorithmically) selected as reference proteomes. xsd:string
rdfs:seeAlsoftp://ftp.uniprot.org/pub/databases/uniprot/current_release/knowledgebase/reference_proteomes/README
rdfs:isDefinedBy up:
rdfs:seeAlsohttp://www.uniprot.org/help/proteome
up:Region_Annotation (rdf:type owl:Class )
rdfs:labelRegion xsd:string
rdfs:subClassOf up:Sequence_Annotation
rdfs:isDefinedBy up:
up:Repeat_Annotation (rdf:type owl:Class )
rdfs:labelRepeat xsd:string
rdfs:subClassOf up:Region_Annotation
rdfs:commentExtent of an internal sequence repetition. xsd:string
rdfs:isDefinedBy up:
rdfs:seeAlsohttp://www.uniprot.org/manual/repeat
up:Representative_Proteome (rdf:type owl:Class )
rdfs:labelRepresentative_Proteome xsd:string
rdfs:subClassOf up:Proteome
rdfs:commentA proteome that is believed by curators, or selected programmatically to be representative for a number of related Proteomes xsd:string
rdfs:isDefinedBy up:
rdfs:seeAlsohttp://www.uniprot.org/help/proteome
up:Resource (rdf:type owl:Class )
rdfs:labelResource xsd:string
owl:equivalentClass Restrict http://purl.uniprot.org/core/database to owl:someValuesFrom owl:Thing
rdfs:commentA life science resource. xsd:string
rdfs:isDefinedBy up:
up:Reviewed (rdf:type owl:Class )
rdfs:labelReviewed xsd:string
owl:equivalentClass Restrict http://purl.uniprot.org/core/reviewed owl:HasValue true
rdfs:comment The class of all reviewed records in the database (i.e. records that where looked at by a curator for integration into the database). xsd:string
rdfs:isDefinedBy up:
up:Reviewed_Protein (rdf:type owl:Class )
rdfs:labelReviewed protein (records) xsd:string
rdfs:subClassOf up:Protein
rdfs:subClassOf up:Reviewed
rdfs:isDefinedBy up:
up:Ribosomal_Frameshifting (rdf:type owl:Class )
rdfs:labelRibosomal Frameshifting xsd:string
rdfs:subClassOf up:Alternative_Products_Annotation
rdfs:isDefinedBy up:
up:Secondary_Structure_Annotation (rdf:type owl:Class )
rdfs:labelSecondary Structure xsd:string
rdfs:subClassOf up:Sequence_Annotation
rdfs:commentDescribes the secondary structure of proteins whose tertiary structure is known experimentally. xsd:string
rdfs:isDefinedBy up:
up:Self_Interaction (rdf:type owl:Class )
rdfs:labelSelf protein interaction xsd:string
rdfs:subClassOf up:Interaction
rdfs:commentDescription of a self protein-protein interaction. xsd:string
rdfs:isDefinedBy up:
rdfs:seeAlsohttp://www.uniprot.org/manual/binary_interactions
up:Sequence (rdf:type owl:Class )
rdfs:labelSequence xsd:string
rdfs:commentAn amino acid sequence. xsd:string
rdfs:isDefinedBy up:
rdfs:seeAlsohttp://www.uniprot.org/help/uniparc
rdfs:seeAlsohttp://www.uniprot.org/manual/sequences
up:Sequence_Annotation (rdf:type owl:Class )
rdfs:labelSequence Annotation xsd:string
rdfs:subClassOf up:Annotation
rdfs:commentDescription of a special region or site in a protein sequence. xsd:string
rdfs:isDefinedBy up:
rdfs:seeAlsohttp://www.uniprot.org/manual/sequence_annotation
up:Sequence_Caution_Annotation (rdf:type owl:Class )
rdfs:labelSequence Caution xsd:string
rdfs:subClassOf up:Sequence_Annotation
rdfs:commentWarning about possible errors related to the protein sequence xsd:string
rdfs:isDefinedBy up:
rdfs:seeAlsohttp://www.uniprot.org/manual/sequence_caution
up:Sequence_Conflict_Annotation (rdf:type owl:Class )
rdfs:labelSequence Conflict xsd:string
rdfs:subClassOf up:Experimental_Information_Annotation
rdfs:commentDifferent sources report differing sequences. xsd:string
rdfs:isDefinedBy up:
rdfs:seeAlsohttp://www.uniprot.org/manual/conflict
up:Sequence_Uncertainty_Annotation (rdf:type owl:Class )
rdfs:labelUnsure Residue xsd:string
rdfs:subClassOf up:Experimental_Information_Annotation
rdfs:commentUsed to describe region(s) of a sequence for which the authors are unsure about the sequence assignment. xsd:string
rdfs:isDefinedBy up:
rdfs:seeAlsohttp://www.uniprot.org/manual/unsure
up:Signal_Peptide_Annotation (rdf:type owl:Class )
rdfs:labelSignal Peptide xsd:string
rdfs:subClassOf up:Molecule_Processing_Annotation
rdfs:commentExtent of a signal sequence (prepeptide). xsd:string
rdfs:isDefinedBy up:
rdfs:seeAlsohttp://www.uniprot.org/manual/signal
up:Similarity_Annotation (rdf:type owl:Class )
rdfs:labelSimilarity xsd:string
rdfs:subClassOf up:Annotation
rdfs:commentDescription of the similarities (sequence or structural) of a protein with other proteins. xsd:string
rdfs:isDefinedBy up:
rdfs:seeAlsohttp://www.uniprot.org/manual/sequence_similarities
up:Simple_Sequence (rdf:type owl:Class )
rdfs:labelSimple Sequence xsd:string
rdfs:subClassOf up:Known_Sequence
rdfs:isDefinedBy up:
up:Site_Annotation (rdf:type owl:Class )
rdfs:labelSite xsd:string
rdfs:subClassOf up:Sequence_Annotation
rdfs:commentAny interesting single amino-acid site on the sequence, that is not defined by another feature key. It can also apply to an amino acid bond which is represented by the positions of the two flanking amino acids. xsd:string
rdfs:isDefinedBy up:
rdfs:seeAlsohttp://www.uniprot.org/manual/site
up:Status (rdf:type owl:Class )
rdfs:commentIndicator for the reliability of a piece of information. xsd:string
rdfs:isDefinedBy up:
rdfs:seeAlsohttp://www.uniprot.org/manual/non_experimental_qualifiers
up:Strain (rdf:type owl:Class )
rdfs:labelStrain xsd:string
rdfs:commentA strain of a species. xsd:string
rdfs:isDefinedBy up:
up:Structure_Determination_Method (rdf:type owl:Class )
rdfs:labelStructure Determination xsd:string
rdfs:subClassOf up:Method
rdfs:commentAn experimental method for determining the 3D structure of a protein. xsd:string
rdfs:isDefinedBy up:
up:Structure_Mapping_Statement (rdf:type owl:Class )
rdfs:labelStructure Mapping Statement xsd:string
rdfs:subClassOf rdf:Statement
rdfs:commentThe relationship between a protein and a 3D structure. xsd:string
rdfs:isDefinedBy up:
up:Structure_Resource (rdf:type owl:Class )
rdfs:labelStructure Resource xsd:string
owl:equivalentClass owl:intersectionOf ( Restrict http://purl.uniprot.org/core/method to owl:allValuesFrom up:Structure_Determination_Method
Restrict http://purl.uniprot.org/core/method to owl:cardinality 1
)
rdfs:subClassOf up:Resource
rdfs:commentA resource that describes the 3D structure of a protein. xsd:string
rdfs:isDefinedBy up:
up:Structured_Name (rdf:type owl:Class )
rdfs:labelStructured_Name xsd:string
rdfs:commentA resource that holds a set of the known names for this protein together. xsd:string
rdfs:isDefinedBy up:
rdfs:seeAlsohttp://www.uniprot.org/manual/protein_names
up:Subcellular_Location (rdf:type owl:Class )
rdfs:labelSubcellular Location
rdfs:subClassOf owl:Class
rdfs:isDefinedBy up:
rdfs:seeAlsohttp://www.uniprot.org/locations/
up:Subcellular_Location_Annotation (rdf:type owl:Class )
rdfs:labelSubcellular Location xsd:string
rdfs:subClassOf up:Annotation
rdfs:commentDescription of the subcellular location of the mature protein. xsd:string
rdfs:isDefinedBy up:
rdfs:seeAlsohttp://www.uniprot.org/manual/subcellular_location
up:Submission_Citation (rdf:type owl:Class )
rdfs:labelSubmission Citation xsd:string
rdfs:subClassOf up:Published_Citation
rdfs:subClassOf Restrict http://purl.uniprot.org/core/submittedTo to owl:cardinality 1
rdfs:commentData that was submitted directly to a database. xsd:string
rdfs:isDefinedBy up:
up:Subunit_Annotation (rdf:type owl:Class )
rdfs:labelSubunit xsd:string
rdfs:subClassOf up:Annotation
rdfs:commentDescription of the quaternary structure of a protein. xsd:string
rdfs:isDefinedBy up:
rdfs:seeAlsohttp://www.uniprot.org/manual/subunit_structure
up:Taxon (rdf:type owl:Class )
rdfs:labelTaxon xsd:string
rdfs:subClassOf owl:Class
rdfs:subClassOf Restrict http://purl.uniprot.org/core/mnemonic to owl:maxCardinality 1
rdfs:subClassOf Restrict http://purl.uniprot.org/core/replaces to owl:allValuesFrom up:Taxon
rdfs:commentAn element of a taxonomy for classifying life forms. xsd:string
rdfs:isDefinedBy up:
rdfs:seeAlsohttp://www.ncbi.nlm.nih.gov/books/NBK54428/
up:Temperature_Dependence_Annotation (rdf:type owl:Class )
rdfs:labelTemperature Dependence xsd:string
rdfs:subClassOf up:Biophysicochemical_Annotation
rdfs:commentIndicates the optimum temperature for enzyme activity and/or the variation of enzyme activity with temperature variation; the thermostability/thermolability of the enzyme is also mentioned when it is known. xsd:string
rdfs:isDefinedBy up:
up:Thesis_Citation (rdf:type owl:Class )
rdfs:labelThesis Citation xsd:string
rdfs:subClassOf up:Published_Citation
rdfs:subClassOf Restrict http://purl.uniprot.org/core/institution to owl:cardinality 1
rdfs:commentA Ph.D. thesis. xsd:string
rdfs:isDefinedBy up:
up:Tissue (rdf:type owl:Class )
rdfs:labelTissue xsd:string
rdfs:commentA tissue such as lung or heart. xsd:string
rdfs:isDefinedBy up:
rdfs:seeAlsohttp://www.uniprot.org/docs/tisslist
up:Tissue_Specificity_Annotation (rdf:type owl:Class )
rdfs:labelTissue Specificity xsd:string
rdfs:subClassOf up:Annotation
rdfs:commentDescription of the tissue specificity of a protein. xsd:string
rdfs:isDefinedBy up:
rdfs:seeAlsohttp://www.uniprot.org/manual/tissue_specificity
up:Topological_Domain_Annotation (rdf:type owl:Class )
rdfs:labelTopological Domain xsd:string
rdfs:subClassOf up:Region_Annotation
rdfs:commentA topological domain. xsd:string
rdfs:isDefinedBy up:
rdfs:seeAlsohttp://www.uniprot.org/manual/domain
up:Topology (rdf:type owl:Class )
rdfs:labelTopology
rdfs:subClassOf up:Subcellular_Location
rdfs:isDefinedBy up:
up:Toxic_Dose_Annotation (rdf:type owl:Class )
rdfs:labelToxic Dose xsd:string
rdfs:subClassOf up:Annotation
rdfs:commentInformation on the LD(50). LD stands for "Lethal Dose". LD(50) is the amount of a toxin, given all at once, which causes the death of 50% (one half) of a group of test animals. xsd:string
rdfs:isDefinedBy up:
rdfs:seeAlsohttp://www.uniprot.org/manual/toxic_dose
up:Transcribed_RNA (rdf:type owl:Class )
rdfs:labelTranscribed RNA xsd:string
rdfs:subClassOf up:RNA
rdfs:isDefinedBy up:
up:Transcript_Resource (rdf:type owl:Class )
rdfs:labelTranscript Resource
rdfs:subClassOf up:Resource
rdfs:isDefinedBy up:
up:Transit_Peptide_Annotation (rdf:type owl:Class )
rdfs:labelTransit Peptide xsd:string
rdfs:subClassOf up:Molecule_Processing_Annotation
rdfs:commentExtent of a transit peptide (mitochondrion, chloroplast, thylakoid, cyanelle or microbody). xsd:string
rdfs:isDefinedBy up:
rdfs:seeAlsohttp://www.uniprot.org/manual/transit
up:Transmembrane_Annotation (rdf:type owl:Class )
rdfs:labelTransmembrane xsd:string
rdfs:subClassOf up:Region_Annotation
rdfs:commentExtent of a transmembrane region. xsd:string
rdfs:isDefinedBy up:
rdfs:seeAlsohttp://www.uniprot.org/manual/transmem
up:Transposon (rdf:type owl:Class )
rdfs:labelTransposon xsd:string
rdfs:commentA transposon xsd:string
rdfs:isDefinedBy up:
up:Turn_Annotation (rdf:type owl:Class )
rdfs:labelTurn xsd:string
rdfs:subClassOf up:Secondary_Structure_Annotation
rdfs:commentTurns within the experimentally determined protein structure. xsd:string
rdfs:isDefinedBy up:
rdfs:seeAlsohttp://www.uniprot.org/manual/turn
up:Unassigned_DNA (rdf:type owl:Class )
rdfs:labelUnassigned DNA xsd:string
rdfs:subClassOf up:DNA
rdfs:isDefinedBy up:
up:Unassigned_RNA (rdf:type owl:Class )
rdfs:labelUnassigned RNA xsd:string
rdfs:subClassOf up:RNA
rdfs:isDefinedBy up:
up:Unknown_Sequence (rdf:type owl:Class )
rdfs:labelUnknown Sequence xsd:string
rdfs:subClassOf up:Sequence
rdfs:isDefinedBy up:
up:Unpublished_Citation (rdf:type owl:Class )
rdfs:labelUnpublished Citation xsd:string
rdfs:subClassOf up:Citation
rdfs:isDefinedBy up:
up:Viral_cRNA (rdf:type owl:Class )
rdfs:labelViral cRNA xsd:string
rdfs:subClassOf up:RNA
rdfs:commentPositive cRNA molecule that is made from from a single stranded genomic RNA. xsd:string
rdfs:isDefinedBy up:
up:Zinc_Finger_Annotation (rdf:type owl:Class )
rdfs:labelZinc Finger xsd:string
rdfs:subClassOf up:Region_Annotation
rdfs:commentExtent of a zinc finger region. xsd:string
rdfs:isDefinedBy up:
rdfs:seeAlsohttp://www.uniprot.org/manual/zn_fing
rdf:Statement (rdf:type owl:Class )
rdfs:Resource (rdf:type owl:Class )
owl:Class (rdf:type owl:Class )
owl:Thing (rdf:type owl:Class )
skos:Concept (rdf:type owl:Class )
foaf:Image (rdf:type owl:Class )

Properties

Object properties

faldo:location (rdf:type owl:ObjectProperty )
up:alternativeName (rdf:type owl:ObjectProperty )
rdfs:commentA synonym of the recommended name. xsd:string
rdfs:isDefinedBy up:
rdfs:range up:Structured_Name
rdfs:subPropertyOf up:structuredName
rdfs:seeAlsohttp://www.uniprot.org/manual/protein_names
rdfs:domain owl:unionOf (
http://purl.uniprot.org/core/Part
or
http://purl.uniprot.org/core/Protein )
up:annotation (rdf:type owl:ObjectProperty )
rdfs:commentAttaches an annotation to a resource. xsd:string
rdfs:isDefinedBy up:
rdfs:range up:Annotation
rdfs:domain up:Protein
up:attribution (rdf:type owl:ObjectProperty )
rdfs:isDefinedBy up:
rdfs:range up:Attribution
rdfs:domain owl:unionOf (
http://purl.uniprot.org/core/Protein
or
http://www.w3.org/1999/02/22-rdf-syntax-ns#Statement )
up:basedOn (rdf:type owl:ObjectProperty )
rdf:type owl:FunctionalProperty
rdfs:labelbased on xsd:string
rdfs:commentThe sequence on which the description of a modified sequence is based. xsd:string
rdfs:isDefinedBy up:
rdfs:domain up:Modified_Sequence
rdfs:range up:Simple_Sequence
up:category (rdf:type owl:ObjectProperty )
rdfs:isDefinedBy up:
up:cellularComponent (rdf:type owl:ObjectProperty )
rdfs:isDefinedBy up:
rdfs:range up:Cellular_Component
rdfs:domain owl:intersectionOf ( Restrict http://purl.uniprot.org/core/cellularComponent owl:onClass up:Cellular_Component
Restrict http://purl.uniprot.org/core/orientation owl:onClass up:Orientation to owl:maxQualifiedCardinality 1
Restrict http://purl.uniprot.org/core/topology owl:onClass up:Topology to owl:maxQualifiedCardinality 1
)
up:chainSequenceMapping (rdf:type owl:ObjectProperty )
rdfs:labelchainSequenceMapping
rdfs:commentA mapping between a Sequence/Entry and aminoacids described in a PDB record. xsd:anyURI
rdfs:isDefinedBy up:
rdfs:domain up:Protein
up:citation (rdf:type owl:ObjectProperty )
rdfs:commentA publication from which data was extracted, or which contains additional information. xsd:string
rdfs:isDefinedBy up:
rdfs:range up:Citation
rdfs:domain owl:unionOf (
http://purl.uniprot.org/core/Cellular_Component
or
http://purl.uniprot.org/core/Database
or
http://purl.uniprot.org/core/External_Sequence
or
http://purl.uniprot.org/core/Nucleotide_Resource
or
http://purl.uniprot.org/core/Orientation
or
http://purl.uniprot.org/core/Protein
or
http://purl.uniprot.org/core/Topology )
up:classifiedWith (rdf:type owl:ObjectProperty )
rdfs:labelclassified with xsd:string
rdfs:commentA concept that classifies this resource. xsd:string
rdfs:isDefinedBy up:
rdfs:range up:Concept
rdfs:domain up:Protein
up:cofactor (rdf:type owl:ObjectProperty )
rdfs:isDefinedBy up:
rdfs:domain up:Cofactor_Annotation
up:commonName (rdf:type owl:ObjectProperty )
rdf:type owl:FunctionalProperty
rdfs:labelcommon name xsd:string
rdfs:isDefinedBy up:
rdfs:domain up:Taxon
rdfs:subPropertyOf up:name
up:commonTaxon (rdf:type owl:ObjectProperty )
rdf:type owl:FunctionalProperty
rdfs:isDefinedBy up:
rdfs:domain up:Cluster
rdfs:range up:Taxon
up:component (rdf:type owl:ObjectProperty )
rdfs:commentA component of a protein. xsd:string
rdfs:isDefinedBy up:
rdfs:range up:Part
rdfs:domain up:Protein
rdfs:subPropertyOf up:part
up:conflictingSequence (rdf:type owl:ObjectProperty )
rdfs:isDefinedBy up:
rdfs:range up:External_Sequence
rdfs:domain owl:unionOf (
http://purl.uniprot.org/core/Protein
or
http://purl.uniprot.org/core/Sequence_Caution_Annotation
or
http://purl.uniprot.org/core/Sequence_Conflict_Annotation )
up:context (rdf:type owl:ObjectProperty )
rdfs:isDefinedBy up:
rdfs:domain up:Citation_Statement
up:database (rdf:type owl:ObjectProperty )
rdf:type owl:FunctionalProperty
rdfs:isDefinedBy up:
rdfs:range up:Database
rdfs:domain up:Resource
up:disease (rdf:type owl:ObjectProperty )
rdfs:isDefinedBy up:
rdfs:range up:Disease
rdfs:domain up:Disease_Annotation
up:domain (rdf:type owl:ObjectProperty )
rdfs:commentA domain of a protein. xsd:string
rdfs:isDefinedBy up:
rdfs:range up:Part
rdfs:domain up:Protein
rdfs:subPropertyOf up:part
up:encodedBy (rdf:type owl:ObjectProperty )
rdfs:labelencoded by xsd:string
rdfs:commentThe gene by which a protein is encoded. xsd:string
rdfs:isDefinedBy up:
rdfs:range up:Gene
rdfs:domain up:Protein
up:encodedIn (rdf:type owl:ObjectProperty )
rdfs:labelencoded in xsd:string
rdfs:commentThe subcellular location where a protein is encoded. xsd:string
rdfs:isDefinedBy up:
rdfs:domain up:Protein
rdfs:range up:Subcellular_Location
up:enzyme (rdf:type owl:ObjectProperty )
rdfs:labelenzyme xsd:string
rdfs:commentThe catalytic activity associated with a protein. or part of a protein. xsd:string
rdfs:isDefinedBy up:
rdfs:range up:Enzyme
rdfs:domain owl:unionOf (
http://purl.uniprot.org/core/Part
or
http://purl.uniprot.org/core/Protein )
up:erratum (rdf:type owl:ObjectProperty )
rdfs:commentAn erratum for a publication. xsd:string
rdfs:isDefinedBy up:
rdfs:range up:Published_Citation
rdfs:domain up:Published_Citation
owl:inverseOf up:erratumFor
up:erratumFor (rdf:type owl:ObjectProperty )
rdfs:labelerratum for xsd:string
rdfs:commentThe publication which an erratum refers to. xsd:string
rdfs:isDefinedBy up:
rdfs:range up:Published_Citation
rdfs:domain up:Published_Citation
up:existence (rdf:type owl:ObjectProperty )
up:host (rdf:type owl:ObjectProperty )
rdfs:isDefinedBy up:
rdfs:domain up:Taxon
rdfs:range up:Taxon
up:interaction (rdf:type owl:ObjectProperty )
rdfs:isDefinedBy up:
rdfs:range up:Interaction
rdfs:domain up:Protein
up:isolatedFrom (rdf:type owl:ObjectProperty )
rdfs:isDefinedBy up:
rdfs:domain up:Protein
rdfs:range up:Tissue
up:locatedIn (rdf:type owl:ObjectProperty )
rdfs:isDefinedBy up:
rdfs:domain up:Subcellular_Location_Annotation
rdfs:range owl:intersectionOf ( Restrict http://purl.uniprot.org/core/cellularComponent owl:onClass up:Cellular_Component
Restrict http://purl.uniprot.org/core/orientation owl:onClass up:Orientation to owl:maxQualifiedCardinality 1
Restrict http://purl.uniprot.org/core/topology owl:onClass up:Topology to owl:maxQualifiedCardinality 1
)
up:locatedOn (rdf:type owl:ObjectProperty )
rdfs:labellocated on xsd:string
rdfs:commentThe molecule a this resource is located on. xsd:string
rdfs:isDefinedBy up:
rdfs:range up:Molecule
rdfs:domain up:Nucleotide_Resource
up:locusName (rdf:type owl:ObjectProperty )
rdfs:labellocus name xsd:string
rdfs:isDefinedBy up:
rdfs:domain up:Gene
rdfs:subPropertyOf up:name
up:mappedAnnotation (rdf:type owl:ObjectProperty )
rdfs:commentMaps annotation to a resource. Used to link annotations/comments from external non UniProt sources via Citations to UniProt resources. xsd:string
rdfs:isDefinedBy up:
rdfs:range up:Annotation
rdfs:domain owl:unionOf (
http://purl.uniprot.org/core/Citation_Statement
or
http://purl.uniprot.org/core/Protein )
up:mappedCitation (rdf:type owl:ObjectProperty )
rdfs:commentA publication from which data was by a extracted by a mapping from non UniProt origin, or which contains additional information. xsd:string
rdfs:isDefinedBy up:
rdfs:range up:Citation
rdfs:domain up:Protein
up:member (rdf:type owl:ObjectProperty )
rdfs:commentOne of several similar resources. xsd:string
rdfs:isDefinedBy up:
rdfs:domain up:Cluster
rdfs:range up:Sequence
owl:inverseOf up:memberOf
up:memberOf (rdf:type owl:ObjectProperty )
rdfs:labelmember of xsd:string
rdfs:isDefinedBy up:
rdfs:range up:Cluster
rdfs:domain up:Sequence
up:method (rdf:type owl:ObjectProperty )
rdfs:commentThe experimental method that was used. xsd:string
rdfs:isDefinedBy up:
rdfs:range up:Method
rdfs:domain owl:unionOf (
http://purl.uniprot.org/core/Mass_Spectrometry_Annotation
or
http://purl.uniprot.org/core/Structure_Resource )
up:mnemonic (rdf:type owl:ObjectProperty )
rdfs:labelMnemonic xsd:string
rdfs:commentA rememberable string that can be used to find entries, not a stable identifier! xsd:string
rdfs:commentA easy to remember identifier for a UniProtKB entry, but it is not a stable identifier and should not be used by programs to identify entries.
rdfs:isDefinedBy up:
rdfs:subPropertyOf up:name
rdfs:seeAlsohttp://www.uniprot.org/manual/entry_name
rdfs:domain owl:unionOf (
http://purl.uniprot.org/core/Cluster
or
http://purl.uniprot.org/core/Protein
or
http://purl.uniprot.org/core/Sequence )
up:modification (rdf:type owl:ObjectProperty )
rdfs:commentA modification of a sequence. xsd:string
rdfs:isDefinedBy up:
rdfs:range up:Alternative_Sequence_Annotation
rdfs:domain up:Modified_Sequence
up:name (rdf:type owl:ObjectProperty )
rdfs:labelname xsd:string
rdfs:isDefinedBy up:
rdfs:subPropertyOf rdfs:label
up:nucleotideSequenceMappingIssue (rdf:type owl:ObjectProperty )
rdfs:labelnucleotideSequenceMappingIssue
rdfs:commentWhen a CDS differs substantially from a reviewed UniProtKB/Swiss-Prot sequence, the UniProt curators indicate the nature of the difference in the corresponding cross-reference. xsd:anyURI
rdfs:isDefinedBy up:
rdfs:range up:Nucleotide_Resource
rdfs:domain up:Reviewed_Protein
up:oldMnemonic (rdf:type owl:ObjectProperty )
rdfs:commentA mnemonic that is no longer in use for this entry.
rdfs:isDefinedBy up:
rdfs:domain up:Protein
rdfs:subPropertyOf up:name
up:orfName (rdf:type owl:ObjectProperty )
rdfs:labelORF name xsd:string
rdfs:isDefinedBy up:
rdfs:domain up:Gene
rdfs:subPropertyOf up:name
up:organism (rdf:type owl:ObjectProperty )
rdfs:commentThe organism in which a protein occurs. xsd:string
rdfs:isDefinedBy up:
rdfs:range up:Taxon
rdfs:domain owl:unionOf (
http://purl.uniprot.org/core/Protein
or
http://purl.uniprot.org/core/Sequence )
up:orientation (rdf:type owl:ObjectProperty )
rdfs:isDefinedBy up:
rdfs:range up:Orientation
rdfs:domain owl:intersectionOf ( Restrict http://purl.uniprot.org/core/cellularComponent owl:onClass up:Cellular_Component
Restrict http://purl.uniprot.org/core/orientation owl:onClass up:Orientation to owl:maxQualifiedCardinality 1
Restrict http://purl.uniprot.org/core/topology owl:onClass up:Topology to owl:maxQualifiedCardinality 1
)
up:otherName (rdf:type owl:ObjectProperty )
rdfs:labelother name xsd:string
rdfs:isDefinedBy up:
rdfs:domain up:Taxon
rdfs:subPropertyOf up:name
up:panproteome (rdf:type owl:ObjectProperty )
rdfs:labelpanproteome xsd:string
rdfs:commentThe current pan proteome sequences are derived from the reference proteome clusters (75% proteome similarity for Fungus and 55% proteome similarity for Archaea and Bacteria). A reference proteome cluster is also known as a representative proteome group (RPG) (Chen et al., 2011). A RPG contains similar proteomes calculated based on their co-membership in UniRef50 clusters. For each non-singleton reference proteome cluster, a pan proteome is a set of sequences consisting of all the sequences in the reference proteome, plus the addition of unique protein sequences that are found in other species or strains of the cluster but not in the reference proteome. These additional sequences are identified using UniRef50 membership. xsd:string
rdfs:seeAlsoftp://ftp.uniprot.orftp://ftp.uniprot.org/pub/databases/uniprot/current_release/knowledgebase/pan_proteomes/READMEg/pub/databases/uniprot/current_release/knowledgebase/pan_proteomes/README
rdfs:seeAlsohttp://pir.georgetown.edu/rps/pp.shtml
rdfs:isDefinedBy up:
rdfs:range up:Proteome
rdfs:domain up:Proteome
up:part (rdf:type owl:ObjectProperty )
rdfs:isDefinedBy up:
rdfs:range up:Part
up:partOf (rdf:type owl:ObjectProperty )
rdfs:isDefinedBy up:
rdfs:range up:Subcellular_Location
rdfs:domain up:Subcellular_Location
up:participant (rdf:type owl:ObjectProperty )
rdfs:commentA protein that participates in a protein-protein interaction. xsd:string
rdfs:isDefinedBy up:
rdfs:domain up:Interaction
rdfs:range up:Participant
up:publishedIn (rdf:type owl:ObjectProperty )
rdfs:commentReserved predicate to link a citation to the Journal that it appeared in. xsd:string
rdfs:isDefinedBy up:
rdfs:domain up:Citation
rdfs:range up:Journal
up:range (rdf:type owl:ObjectProperty )
rdfs:commentA range of amino acids. xsd:string
rdfs:subPropertyOf faldo:location
rdfs:isDefinedBy up:
rdfs:domain up:Sequence_Annotation
up:rank (rdf:type owl:ObjectProperty )
rdf:type owl:FunctionalProperty
rdfs:commentThe rank of a taxon. xsd:string
rdfs:isDefinedBy up:
rdfs:range up:Rank
rdfs:domain up:Taxon
up:recommendedName (rdf:type owl:ObjectProperty )
rdfs:commentThe name recommended by the UniProt consortium. xsd:string
rdfs:isDefinedBy up:
rdfs:range up:Structured_Name
rdfs:subPropertyOf up:structuredName
rdfs:domain owl:unionOf (
http://purl.uniprot.org/core/Part
or
http://purl.uniprot.org/core/Protein )
up:redundantTo (rdf:type owl:ObjectProperty )
rdfs:labelredundantTo xsd:string
rdfs:commentIndicates which proteome this proteome is redundant to. xsd:string
rdfs:isDefinedBy up:
rdfs:range up:Proteome
rdfs:seeAlsohttp://www.uniprot.org/help/proteome_redundancy
rdfs:domain rdfs:Resource
up:relatedLocation (rdf:type owl:ObjectProperty )
rdfs:isDefinedBy up:
rdfs:domain up:Subcellular_Location
rdfs:range up:Subcellular_Location
up:replacedBy (rdf:type owl:ObjectProperty )
rdfs:labelreplaced by xsd:string
rdfs:commentA resource that replaces this resource. xsd:string
rdfs:isDefinedBy up:
owl:inverseOf up:replaces
rdfs:range owl:unionOf (
http://purl.uniprot.org/core/Enzyme
or
http://purl.uniprot.org/core/Protein
or
http://purl.uniprot.org/core/Taxon )
rdfs:domain owl:unionOf (
http://purl.uniprot.org/core/Enzyme
or
http://purl.uniprot.org/core/Protein
or
http://purl.uniprot.org/core/Taxon )
up:replaces (rdf:type owl:ObjectProperty )
rdfs:commentA resource that is replaced by this resource. xsd:string
rdfs:isDefinedBy up:
rdfs:range owl:intersectionOf ( )
rdfs:domain owl:unionOf (
http://purl.uniprot.org/core/Enzyme
or
http://purl.uniprot.org/core/Protein
or
http://purl.uniprot.org/core/Taxon )
up:representativeFor (rdf:type owl:ObjectProperty )
rdf:type owl:FunctionalProperty
rdf:type owl:InverseFunctionalProperty
rdfs:isDefinedBy up:
rdfs:range up:Cluster
rdfs:domain owl:unionOf (
http://purl.uniprot.org/core/Protein
or
http://purl.uniprot.org/core/Sequence )
up:scientificName (rdf:type owl:ObjectProperty )
rdf:type owl:FunctionalProperty
rdfs:labelscientific name xsd:string
rdfs:isDefinedBy up:
rdfs:domain up:Taxon
rdfs:subPropertyOf up:name
up:seedFor (rdf:type owl:ObjectProperty )
rdfs:isDefinedBy up:
rdfs:range up:Cluster
rdfs:domain up:Sequence
up:sequence (rdf:type owl:ObjectProperty )
rdfs:commentAn amino acid sequence. xsd:string
rdfs:isDefinedBy up:
rdfs:range up:Sequence
owl:inverseOf up:sequenceFor
rdfs:domain owl:unionOf (
http://purl.uniprot.org/core/Annotation
or
http://purl.uniprot.org/core/Protein
or
http://purl.uniprot.org/core/Resource )
up:sequenceDiscrepancy (rdf:type owl:ObjectProperty )
rdfs:commentUsed when a CoDing Sequences (CDS) from the INSDC differs substantially from a reviewed UniProtKB/Swiss-Prot sequence, the UniProt curators indicate the nature of the difference as a rdfs:comment linked via this predicate.
rdfs:isDefinedBy up:
rdfs:domain up:Nucleotide_Resource
up:sequenceFor (rdf:type owl:ObjectProperty )
rdfs:labelsequence for xsd:string
rdfs:commentA resource that describes this sequence. xsd:string
rdfs:isDefinedBy up:
rdfs:domain up:Sequence
rdfs:range owl:unionOf (
http://purl.uniprot.org/core/Annotation
or
http://purl.uniprot.org/core/Protein
or
http://purl.uniprot.org/core/Resource )
up:signatureSequenceMatch (rdf:type owl:ObjectProperty )
rdfs:commentIndicates that the signature described by the subject resource matches mathematically and that that match is described by the object of a triple using this property as predicate.
rdfs:isDefinedBy up:
rdfs:domain up:Resource
up:someMembersClassifiedWith (rdf:type owl:ObjectProperty )
rdfs:commentIndicates which GO terms are somewhat consistently used to annotate UniProtKB members of this cluster.
rdfs:isDefinedBy up:
rdfs:domain up:Cluster
rdfs:range owl:Class
up:source (rdf:type owl:ObjectProperty )
rdfs:isDefinedBy up:
rdfs:domain up:Attribution
up:status (rdf:type owl:ObjectProperty )
rdf:type owl:FunctionalProperty
rdfs:commentThe reliability of a statement. xsd:string
rdfs:isDefinedBy up:
rdfs:range up:Status
up:strain (rdf:type owl:ObjectProperty )
rdfs:isDefinedBy up:
rdfs:range up:Strain
rdfs:domain up:Taxon
up:structuredName (rdf:type owl:ObjectProperty )
rdfs:isDefinedBy up:
rdfs:range up:Structured_Name
rdfs:domain owl:unionOf (
http://purl.uniprot.org/core/Part
or
http://purl.uniprot.org/core/Protein )
up:submittedName (rdf:type owl:ObjectProperty )
rdfs:commentA name provided by the submitter of the underlying nucleotide sequence. xsd:string
rdfs:isDefinedBy up:
rdfs:range up:Structured_Name
rdfs:subPropertyOf up:structuredName
rdfs:domain owl:unionOf (
http://purl.uniprot.org/core/Part
or
http://purl.uniprot.org/core/Protein )
up:synonym (rdf:type owl:ObjectProperty )
rdf:type owl:FunctionalProperty
rdfs:isDefinedBy up:
rdfs:domain up:Taxon
rdfs:subPropertyOf up:name
up:topology (rdf:type owl:ObjectProperty )
rdfs:isDefinedBy up:
rdfs:range up:Topology
rdfs:domain owl:intersectionOf ( Restrict http://purl.uniprot.org/core/cellularComponent owl:onClass up:Cellular_Component
Restrict http://purl.uniprot.org/core/orientation owl:onClass up:Orientation to owl:maxQualifiedCardinality 1
Restrict http://purl.uniprot.org/core/topology owl:onClass up:Topology to owl:maxQualifiedCardinality 1
)
up:transcribedFrom (rdf:type owl:ObjectProperty )
rdfs:isDefinedBy up:
rdfs:domain up:Transcript_Resource
up:translatedFrom (rdf:type owl:ObjectProperty )
rdfs:isDefinedBy up:
rdfs:domain up:External_Sequence
rdfs:range up:Nucleotide_Resource
up:translatedTo (rdf:type owl:ObjectProperty )
rdfs:isDefinedBy up:
rdfs:domain up:Transcript_Resource
up:withdrawnFromINSDC (rdf:type owl:ObjectProperty )
rdfs:labelwithdrawnFromINSDC xsd:anyURI
rdfs:isDefinedBy up:
rdfs:label (rdf:type owl:ObjectProperty )
skos:prefLabel (rdf:type owl:ObjectProperty )

Datatype properties

up:abstract (rdf:type owl:DatatypeProperty )
rdf:type owl:FunctionalProperty
rdfs:labelabstract xsd:string
rdfs:commentTrue if the class does not have any direct instances. xsd:string
rdfs:isDefinedBy up:
rdfs:domain up:Database
rdfs:range xsd:boolean
up:activity (rdf:type owl:DatatypeProperty )
rdfs:labelcatalytic activity xsd:string
rdfs:commentThe description of a catalytic activity. xsd:string
rdfs:isDefinedBy up:
rdfs:domain up:Enzyme
rdfs:range xsd:string
up:alias (rdf:type owl:DatatypeProperty )
rdfs:commentAn alternative name used in the flat text format. xsd:string
rdfs:isDefinedBy up:
rdfs:range xsd:string
up:allergenName (rdf:type owl:DatatypeProperty )
rdfs:labelallergen name xsd:string
rdfs:commentSee http://www.expasy.org/cgi-bin/lists?allergen.txt xsd:string
rdfs:isDefinedBy up:
rdfs:subPropertyOf up:structuredNameType
up:atypical (rdf:type owl:DatatypeProperty )
rdf:type owl:FunctionalProperty
rdfs:commentTrue if the protein is divergent in sequence or has mutated functional sites. xsd:string
rdfs:isDefinedBy up:
rdfs:domain up:Family_Membership_Statement
rdfs:range xsd:boolean
up:author (rdf:type owl:DatatypeProperty )
rdfs:commentThe author of a publication. xsd:string
rdfs:isDefinedBy up:
rdfs:domain up:Citation
rdfs:range xsd:string
up:authorsIncomplete (rdf:type owl:DatatypeProperty )
rdfs:isDefinedBy up:
rdfs:domain up:Citation
rdfs:range xsd:boolean
up:base (rdf:type owl:DatatypeProperty )
up:begin (rdf:type owl:DatatypeProperty )
rdf:type owl:FunctionalProperty
rdfs:commentThe first position of a range. xsd:string
rdfs:isDefinedBy up:
rdfs:range xsd:int
rdfs:domain owl:unionOf (
http://purl.uniprot.org/core/Range
or
http://purl.uniprot.org/core/Sequence )
up:biotechName (rdf:type owl:DatatypeProperty )
rdfs:commentA name used in a biotechnological context. xsd:string
rdfs:isDefinedBy up:
rdfs:subPropertyOf up:structuredNameType
up:cdAntigenName (rdf:type owl:DatatypeProperty )
rdfs:commentA name from the Human Cell Differentiation Molecules (HCDM) nomenclature. xsd:string
rdfs:isDefinedBy up:
rdfs:subPropertyOf up:structuredNameType
up:certain (rdf:type owl:DatatypeProperty )
rdf:type owl:FunctionalProperty
rdfs:commentFalse if there is any uncertainty about a statement. xsd:string
rdfs:isDefinedBy up:
rdfs:range xsd:boolean
rdfs:domain owl:unionOf (
http://purl.uniprot.org/core/Absorption_Annotation
or
http://purl.uniprot.org/core/Domain_Assignment_Statement
or
http://purl.uniprot.org/core/Endpoint_Statement )
up:chain (rdf:type owl:DatatypeProperty )
rdfs:commentMaps a series of symbols representing chains of a protein to a range of amino acids. xsd:string
rdfs:isDefinedBy up:
rdfs:domain up:Structure_Mapping_Statement
rdfs:range xsd:string
up:checksum (rdf:type owl:DatatypeProperty )
rdfs:commentAn caclulated value that is used to detect if there are errors in the sequence as shown due to among others IO errors. Both the crc64 and md5sum have collisions in UniProt data and cannot be used as unique keys.
rdfs:isDefinedBy up:
up:cofactorLabel (rdf:type owl:DatatypeProperty )
rdfs:labelcofactorLabel xsd:string
rdfs:commentA cofactor required for a catalytic activity. xsd:string
rdfs:isDefinedBy up:
rdfs:domain up:Enzyme
rdfs:range xsd:string
up:commonName (rdf:type owl:DatatypeProperty )
rdf:type owl:FunctionalProperty
rdfs:labelcommon name xsd:string
rdfs:isDefinedBy up:
rdfs:range xsd:string
up:complete (rdf:type owl:DatatypeProperty )
rdfs:isDefinedBy up:
rdfs:domain up:Taxon
rdfs:seeAlsohttp://www.uniprot.org/faq/15
rdfs:range xsd:boolean
up:crc64Checksum (rdf:type owl:DatatypeProperty )
rdf:type owl:FunctionalProperty
rdfs:isDefinedBy up:
rdfs:domain up:Sequence
rdfs:subPropertyOf up:checksum
rdfs:range xsd:token
up:created (rdf:type owl:DatatypeProperty )
rdf:type owl:FunctionalProperty
rdfs:commentThe date a resource was created. xsd:string
rdfs:isDefinedBy up:
rdfs:range xsd:date
rdfs:domain owl:unionOf (
http://purl.uniprot.org/core/Protein
or
http://purl.uniprot.org/core/Resource
or
http://purl.uniprot.org/core/Sequence )
up:curated (rdf:type owl:DatatypeProperty )
rdfs:commentIf true the described database has some level of curation. xsd:string
rdfs:isDefinedBy up:
rdfs:domain up:Database
rdfs:range xsd:boolean
up:date (rdf:type owl:DatatypeProperty )
rdf:type owl:FunctionalProperty
rdfs:isDefinedBy up:
rdfs:domain owl:unionOf (
http://purl.uniprot.org/core/Attribution
or
http://purl.uniprot.org/core/Citation )
up:domains (rdf:type owl:DatatypeProperty )
rdf:type owl:FunctionalProperty
rdfs:commentThe number of domains in a protein that correspond to a family. This is almost always 1, but may be 2 if two identical domains are fused. xsd:string
rdfs:isDefinedBy up:
rdfs:domain up:Family_Membership_Statement
rdfs:range xsd:int
up:ecName (rdf:type owl:DatatypeProperty )
rdfs:commentThe ecName is the enzyme classification associated with a structured name of the protein. Proteins are often named after their enzymatic activity but can have more than one activity leading to multiple names.
rdfs:isDefinedBy up:
rdfs:subPropertyOf up:structuredNameType
up:editor (rdf:type owl:DatatypeProperty )
rdfs:commentThe editor of a publication. xsd:string
rdfs:isDefinedBy up:
rdfs:domain up:Book_Citation
rdfs:range xsd:string
up:end (rdf:type owl:DatatypeProperty )
rdf:type owl:FunctionalProperty
rdfs:commentThe last position of a range. xsd:string
rdfs:isDefinedBy up:
rdfs:range xsd:int
rdfs:domain owl:unionOf (
http://purl.uniprot.org/core/Range
or
http://purl.uniprot.org/core/Sequence )
up:experiments (rdf:type owl:DatatypeProperty )
rdf:type owl:FunctionalProperty
rdfs:isDefinedBy up:
rdfs:domain up:Interaction
rdfs:range xsd:int
up:fragment (rdf:type owl:DatatypeProperty )
rdfs:commentIndicates if a sequence is complete or consists of one or more fragments. xsd:string
rdfs:isDefinedBy up:
rdfs:domain up:Simple_Sequence
rdfs:seeAlsohttp://www.uniprot.org/manual/sequence_status
rdfs:range Restrict
up:frameshift (rdf:type owl:DatatypeProperty )
rdfs:commentTrue if a sequence modification causes a frameshift. xsd:string
rdfs:isDefinedBy up:
rdfs:domain up:RNA_Editing_Annotation
rdfs:range xsd:boolean
up:fullName (rdf:type owl:DatatypeProperty )
rdfs:commentThe full name. xsd:string
rdfs:isDefinedBy up:
rdfs:subPropertyOf up:structuredNameType
up:fused (rdf:type owl:DatatypeProperty )
rdf:type owl:FunctionalProperty
rdfs:commentTrue if the rule on which the membership of a protein to a family is based does not cover the entire protein. xsd:string
rdfs:isDefinedBy up:
rdfs:domain up:Family_Membership_Statement
rdfs:range xsd:boolean
up:group (rdf:type owl:DatatypeProperty )
rdfs:commentThe group or consortium that authored a publication. xsd:string
rdfs:isDefinedBy up:
rdfs:domain up:Citation
rdfs:subPropertyOf up:author
rdfs:range xsd:string
up:height (rdf:type owl:DatatypeProperty )
rdf:type owl:FunctionalProperty
rdfs:isDefinedBy up:
rdfs:range xsd:int
rdfs:domain foaf:Image
up:hits (rdf:type owl:DatatypeProperty )
rdf:type owl:FunctionalProperty
rdfs:commentThe number of hits found in a sequence. xsd:string
rdfs:isDefinedBy up:
rdfs:domain up:Domain_Assignment_Statement
rdfs:range xsd:int
up:identity (rdf:type owl:DatatypeProperty )
rdf:type owl:FunctionalProperty
rdfs:commentThe level of sequence identity in a cluster. xsd:string
rdfs:isDefinedBy up:
rdfs:domain up:Cluster
rdfs:range Restrict
up:implicit (rdf:type owl:DatatypeProperty )
rdf:type owl:FunctionalProperty
rdfs:commentTrue if existance of this resource can be inferred. xsd:string
rdfs:isDefinedBy up:
rdfs:domain up:Database
rdfs:range xsd:boolean
up:indexable (rdf:type owl:DatatypeProperty )
rdf:type owl:FunctionalProperty
rdfs:isDefinedBy up:
rdfs:range xsd:boolean
up:institution (rdf:type owl:DatatypeProperty )
rdfs:commentThe institution at which a thesis was written. xsd:string
rdfs:isDefinedBy up:
rdfs:domain up:Thesis_Citation
rdfs:range xsd:string
up:internationalNonproprietaryName (rdf:type owl:DatatypeProperty )
rdfs:commentThe international nonproprietary name: A generic name for a pharmaceutical substance or active pharmaceutical ingredient that is globally recognized and is a public property. xsd:string
rdfs:isDefinedBy up:
rdfs:subPropertyOf up:structuredNameType
up:length (rdf:type owl:DatatypeProperty )
rdf:type owl:FunctionalProperty
rdfs:isDefinedBy up:
rdfs:domain up:Sequence
rdfs:range xsd:int
up:limit (rdf:type owl:DatatypeProperty )
rdf:type owl:FunctionalProperty
rdfs:commentTrue if the range does not extend beyond the specified endpoint. xsd:string
rdfs:isDefinedBy up:
rdfs:domain up:Endpoint_Statement
rdfs:range xsd:boolean
up:linkIsExplicit (rdf:type owl:DatatypeProperty )
rdfs:commentTrue if the Database is linked by an explicit action to UniProt, false if it is done using a simple hardcoded rule. xsd:string
rdfs:isDefinedBy up:
rdfs:domain up:Database
rdfs:range xsd:boolean
up:locator (rdf:type owl:DatatypeProperty )
rdfs:isDefinedBy up:
rdfs:domain up:Citation
rdfs:range xsd:string
up:locusName (rdf:type owl:DatatypeProperty )
rdfs:labellocus name xsd:string
rdfs:isDefinedBy up:
rdfs:range xsd:string
up:manual (rdf:type owl:DatatypeProperty )
rdf:type owl:FunctionalProperty
rdfs:isDefinedBy up:
rdfs:domain up:Attribution
rdfs:range xsd:boolean
up:mass (rdf:type owl:DatatypeProperty )
rdf:type owl:FunctionalProperty
rdfs:commentThe mass of a sequence in Daltons. xsd:string
rdfs:isDefinedBy up:
rdfs:domain up:Simple_Sequence
rdfs:range xsd:int
up:maximum (rdf:type owl:DatatypeProperty )
rdf:type owl:FunctionalProperty
rdfs:commentA maximum value. xsd:string
rdfs:isDefinedBy up:
rdfs:domain up:Absorption_Annotation
rdfs:range xsd:float
up:md5Checksum (rdf:type owl:DatatypeProperty )
rdf:type owl:FunctionalProperty
rdfs:isDefinedBy up:
rdfs:domain up:Sequence
rdfs:subPropertyOf up:checksum
rdfs:range xsd:token
up:measuredActivity (rdf:type owl:DatatypeProperty )
rdfs:labelmeasured activity xsd:string
rdfs:commentThe maximum velocity, Vmax. xsd:string
rdfs:isDefinedBy up:
rdfs:domain up:Kinetics_Annotation
rdfs:range xsd:string
up:measuredAffinity (rdf:type owl:DatatypeProperty )
rdfs:labelmeasured affinity xsd:string
rdfs:commentThe Michaelis-Menten constant, Km. xsd:string
rdfs:isDefinedBy up:
rdfs:domain up:Kinetics_Annotation
rdfs:range xsd:string
up:measuredError (rdf:type owl:DatatypeProperty )
rdf:type owl:FunctionalProperty
rdfs:labelmeasured error xsd:string
rdfs:commentThe magnitude of the error of a value that was measured. xsd:string
rdfs:isDefinedBy up:
rdfs:domain up:Mass_Spectrometry_Annotation
rdfs:range xsd:float
up:measuredValue (rdf:type owl:DatatypeProperty )
rdf:type owl:FunctionalProperty
rdfs:labelmeasured value xsd:string
rdfs:commentA value that was measured. xsd:string
rdfs:isDefinedBy up:
rdfs:domain up:Mass_Spectrometry_Annotation
rdfs:range xsd:float
up:mnemonic (rdf:type owl:DatatypeProperty )
rdfs:labelMnemonic xsd:string
rdfs:commentA rememberable string that can be used to find entries, not a stable identifier! xsd:string
rdfs:commentA easy to remember identifier for a UniProtKB entry, but it is not a stable identifier and should not be used by programs to identify entries.
rdfs:isDefinedBy up:
rdfs:seeAlsohttp://www.uniprot.org/manual/entry_name
rdfs:range xsd:string
up:modified (rdf:type owl:DatatypeProperty )
rdf:type owl:FunctionalProperty
rdfs:commentThe date a resource was last modified. xsd:string
rdfs:isDefinedBy up:
rdfs:range xsd:date
rdfs:domain owl:unionOf (
http://purl.uniprot.org/core/Cluster
or
http://purl.uniprot.org/core/Protein
or
http://purl.uniprot.org/core/Sequence )
up:name (rdf:type owl:DatatypeProperty )
rdfs:labelname xsd:string
rdfs:isDefinedBy up:
rdfs:range xsd:string
up:negative (rdf:type owl:DatatypeProperty )
rdf:type owl:FunctionalProperty
rdfs:isDefinedBy up:
rdfs:domain up:Interaction
rdfs:range xsd:boolean
up:obsolete (rdf:type owl:DatatypeProperty )
rdf:type owl:FunctionalProperty
rdfs:labelobsolete xsd:string
rdfs:commentTrue if this resource has been replaced or deleted. xsd:string
rdfs:isDefinedBy up:
rdfs:range xsd:boolean
rdfs:domain owl:unionOf (
http://purl.uniprot.org/core/Protein
or
http://purl.uniprot.org/core/Taxon )
up:oldMnemonic (rdf:type owl:DatatypeProperty )
rdfs:commentA mnemonic that is no longer in use for this entry.
rdfs:isDefinedBy up:
rdfs:domain up:Protein
rdfs:range xsd:string
up:orfName (rdf:type owl:DatatypeProperty )
rdfs:labelORF name xsd:string
rdfs:isDefinedBy up:
rdfs:range xsd:string
up:otherName (rdf:type owl:DatatypeProperty )
rdfs:labelother name xsd:string
rdfs:isDefinedBy up:
rdfs:range xsd:string
up:pages (rdf:type owl:DatatypeProperty )
rdf:type owl:FunctionalProperty
rdfs:commentThe first and last page for a chapter or article. xsd:string
rdfs:isDefinedBy up:
rdfs:range xsd:string
rdfs:domain owl:unionOf (
http://purl.uniprot.org/core/Book_Citation
or
http://purl.uniprot.org/core/Journal_Citation )
up:partOfLineage (rdf:type owl:DatatypeProperty )
rdf:type owl:FunctionalProperty
rdfs:labelpart of lineage xsd:string
rdfs:commentTrue for taxa that can appear as part of an organism's non abbreviated lineage. In the flatfile and XML views of an UniProt entry (as well as at INSDC) only these taxonomic nodes are shown. xsd:string
rdfs:isDefinedBy up:
rdfs:domain up:Taxon
rdfs:seeAlsohttp://www.uniprot.org/help/taxonomy#lineage
rdfs:range xsd:boolean
up:partial (rdf:type owl:DatatypeProperty )
rdf:type owl:FunctionalProperty
rdfs:commentTrue if the pattern or profile on which the domain assignment is based did not detect the sequence because the sequence is not complete and lacks the region on which the pattern or profile is based. xsd:string
rdfs:isDefinedBy up:
rdfs:domain up:Domain_Assignment_Statement
rdfs:range xsd:boolean
up:pattern (rdf:type owl:DatatypeProperty )
rdf:type owl:FunctionalProperty
rdfs:commentA URL pattern, used to generate links by substituting an identifier. xsd:string
rdfs:isDefinedBy up:
rdfs:domain up:Database
rdfs:range xsd:string
up:place (rdf:type owl:DatatypeProperty )
rdf:type owl:FunctionalProperty
rdfs:commentThe place where a publication was published. This usually includes a country name. xsd:string
rdfs:isDefinedBy up:
rdfs:range xsd:string
rdfs:domain owl:unionOf (
http://purl.uniprot.org/core/Book_Citation
or
http://purl.uniprot.org/core/Thesis_Citation )
up:position (rdf:type owl:DatatypeProperty )
rdfs:commentA position on a sequence. xsd:string
rdfs:isDefinedBy up:
rdfs:domain up:RNA_Editing_Annotation
rdfs:range xsd:int
up:precursor (rdf:type owl:DatatypeProperty )
rdfs:isDefinedBy up:
rdfs:domain up:Simple_Sequence
rdfs:range xsd:boolean
up:publisher (rdf:type owl:DatatypeProperty )
rdfs:commentThe publisher of a book. xsd:string
rdfs:isDefinedBy up:
rdfs:domain up:Book_Citation
rdfs:range xsd:string
up:referenceProteome (rdf:type owl:DatatypeProperty )
rdfs:isDefinedBy up:
rdfs:domain up:Taxon
rdfs:seeAlsohttp://www.uniprot.org/faq/47
rdfs:range xsd:boolean
up:representativeProteome (rdf:type owl:DatatypeProperty )
rdfs:labelrepresentativeProteome xsd:string
owl:deprecatedtrue xsd:boolean
rdfs:isDefinedBy up:
rdfs:range xsd:boolean
rdfs:domain owl:Thing
up:resolution (rdf:type owl:DatatypeProperty )
rdf:type owl:FunctionalProperty
rdfs:commentThe resolution of an experiment, in Angstrom. xsd:string
rdfs:isDefinedBy up:
rdfs:domain up:Structure_Resource
rdfs:range xsd:float
up:reviewed (rdf:type owl:DatatypeProperty )
rdf:type owl:FunctionalProperty
rdfs:commentIndicates whether a resource has been reviewed by a curator. xsd:string
rdfs:isDefinedBy up:
rdfs:range xsd:boolean
rdfs:domain owl:unionOf (
http://purl.uniprot.org/core/Protein
or
http://purl.uniprot.org/core/Taxon )
up:scientificName (rdf:type owl:DatatypeProperty )
rdf:type owl:FunctionalProperty
rdfs:labelscientific name xsd:string
rdfs:isDefinedBy up:
rdfs:range xsd:string
up:scope (rdf:type owl:DatatypeProperty )
rdfs:commentThe extent of the work carried out by the authors of a publication. xsd:string
rdfs:isDefinedBy up:
rdfs:domain up:Citation_Statement
rdfs:range xsd:string
up:shortCoden (rdf:type owl:DatatypeProperty )
rdfs:labelshortCoden xsd:string
rdfs:commentUsed to link a Journal to its shortCoden xsd:string
rdfs:isDefinedBy up:
rdfs:domain up:Journal
rdfs:range xsd:string
up:shortName (rdf:type owl:DatatypeProperty )
rdfs:commentAn abbreviation of the full name or an acronym. xsd:string
rdfs:isDefinedBy up:
rdfs:subPropertyOf up:structuredNameType
up:structuredNameType (rdf:type owl:DatatypeProperty )
rdfs:commentAll names of the protein, from commonly used to obsolete, to used in the literature..
rdfs:isDefinedBy up:
rdfs:domain up:Structured_Name
rdfs:seeAlsohttp://www.uniprot.org/manual/protein_names
rdfs:range xsd:string
up:submittedTo (rdf:type owl:DatatypeProperty )
rdfs:commentThe database a resource was submitted to. xsd:string
rdfs:isDefinedBy up:
rdfs:domain up:Submission_Citation
up:substitution (rdf:type owl:DatatypeProperty )
rdfs:commentA replacement sequence. xsd:string
rdfs:isDefinedBy up:
rdfs:range xsd:string
rdfs:domain owl:unionOf (
http://purl.uniprot.org/core/Mutagenesis_Annotation
or
http://purl.uniprot.org/core/Natural_Variant_Annotation
or
http://purl.uniprot.org/core/Sequence_Conflict_Annotation )
up:synonym (rdf:type owl:DatatypeProperty )
rdf:type owl:FunctionalProperty
rdfs:isDefinedBy up:
rdfs:range xsd:string
up:title (rdf:type owl:DatatypeProperty )
rdf:type owl:FunctionalProperty
rdfs:commentThe title of a publication. xsd:string
rdfs:isDefinedBy up:
rdfs:domain up:Citation
rdfs:range xsd:string
up:uriTemplate (rdf:type owl:DatatypeProperty )
rdfs:commentAn string template that can be used to figure out from the database id what uri desribes it. xsd:string
rdfs:isDefinedBy up:
rdfs:domain up:Database
rdfs:range xsd:string
up:urlTemplate (rdf:type owl:DatatypeProperty )
rdfs:commentAn string template that can be used to figure out from the database id what html page talks about it. xsd:string
rdfs:isDefinedBy up:
rdfs:domain up:Database
rdfs:range xsd:string
up:version (rdf:type owl:DatatypeProperty )
rdf:type owl:FunctionalProperty
rdfs:isDefinedBy up:
rdfs:range xsd:int
rdfs:domain owl:unionOf (
http://purl.uniprot.org/core/Protein
or
http://purl.uniprot.org/core/Sequence )
up:volume (rdf:type owl:DatatypeProperty )
rdf:type owl:FunctionalProperty
rdfs:commentThe volume a publication is part of. xsd:string
rdfs:isDefinedBy up:
rdfs:domain owl:unionOf (
http://purl.uniprot.org/core/Book_Citation
or
http://purl.uniprot.org/core/Journal_Citation )
up:width (rdf:type owl:DatatypeProperty )
rdf:type owl:FunctionalProperty
rdfs:isDefinedBy up:
rdfs:range xsd:int
rdfs:domain foaf:Image
up:xeno (rdf:type owl:DatatypeProperty )
rdf:type owl:FunctionalProperty
rdfs:isDefinedBy up:
rdfs:domain up:Interaction
rdfs:seeAlsohttp://www.uniprot.org/manual/binary_interactions
rdfs:range xsd:boolean

Instance data

up:API (rdf:type owl:Thing )
rdf:type up:Mass_Measurement_Method
rdf:type owl:NamedIndividual
rdfs:labelAtmospheric Pressure Ionization xsd:string
rdfs:commentMass measurement using Atmospheric Pressure Ionization
rdfs:isDefinedBy up:
up:Apicoplast (rdf:type owl:Thing )
rdf:type up:Organelle
rdf:type owl:NamedIndividual
rdfs:labelApicoplast xsd:string
rdfs:isDefinedBy up:
up:By_Similarity (rdf:type owl:Thing )
rdf:type up:Status
rdf:type owl:NamedIndividual
rdfs:labelBy Similarity xsd:string
rdfs:isDefinedBy up:
up:Chloroplast (rdf:type owl:Thing )
rdf:type up:Organelle
rdf:type owl:NamedIndividual
rdfs:labelChloroplast xsd:string
rdfs:isDefinedBy up:
up:Class (rdf:type owl:Thing )
rdf:type up:Rank
rdf:type owl:NamedIndividual
rdfs:labelTaxonomy rank Class xsd:string
rdfs:isDefinedBy up:
up:Cohort (rdf:type owl:Thing )
rdf:type up:Rank
rdf:type owl:NamedIndividual
rdfs:labelCohort xsd:string
rdfs:commentTaxonomy rank cohort xsd:string
rdfs:isDefinedBy up:
up:Cyanelle (rdf:type owl:Thing )
rdf:type up:Organelle
rdf:type owl:NamedIndividual
rdfs:labelCyanelle xsd:string
rdfs:isDefinedBy up:
up:ESI (rdf:type owl:Thing )
rdf:type up:Mass_Measurement_Method
rdf:type owl:NamedIndividual
rdfs:labelElectrospray Ionization xsd:string
rdfs:seeAlsohttp://dbpedia.org/resource/Electrospray_ionization
rdfs:isDefinedBy up:
up:Electron_Microscopy (rdf:type owl:Thing )
rdf:type up:Structure_Determination_Method
rdf:type owl:NamedIndividual
rdfs:labelElectron Microscopy xsd:string
rdfs:commentThe electron microscope is a microscope that can magnify very small details with high resolving power due to the use of electrons rather than light to scatter off material, magnifying at levels up to 500,000 times. xsd:string
rdfs:seeAlsohttp://dbpedia.org/resource/Electron_microscopy
rdfs:isDefinedBy up:
up:Evidence_at_Protein_Level_Existence (rdf:type owl:Thing )
rdf:type up:Protein_Existence
rdf:type owl:NamedIndividual
rdfs:labelEvidence at protein level xsd:string
rdfs:isDefinedBy up:
up:Evidence_at_Transcript_Level_Existence (rdf:type owl:Thing )
rdf:type up:Protein_Existence
rdf:type owl:NamedIndividual
rdfs:labelEvidence at transcript level xsd:string
rdfs:commentIndicates that the existence of a protein has not been strictly proven but that expression data (such as existence of cDNA(s), RT-PCR or Northern blots) indicate the existence of a transcript. xsd:string
rdfs:isDefinedBy up:
up:Experimental (rdf:type owl:Thing )
rdf:type up:Status
rdf:type owl:NamedIndividual
rdfs:labelIndicates that there is some experimental evidence that the given annotation could apply. xsd:string
rdfs:isDefinedBy up:
up:FAB (rdf:type owl:Thing )
rdf:type up:Mass_Measurement_Method
rdf:type owl:NamedIndividual
rdfs:labelFast Atom Bombardment xsd:string
rdfs:isDefinedBy up:
up:Family (rdf:type owl:Thing )
rdf:type up:Rank
rdf:type owl:NamedIndividual
rdfs:labelTaxonomy rank Family xsd:string
rdfs:isDefinedBy up:
up:Fiber_Diffraction (rdf:type owl:Thing )
rdf:type up:Structure_Determination_Method
rdf:type owl:NamedIndividual
rdfs:labelFiber Diffraction xsd:string
rdfs:isDefinedBy up:
up:Forma (rdf:type owl:Thing )
rdf:type up:Rank
rdf:type owl:NamedIndividual
rdfs:labelTaxonomy rank Forma xsd:string
rdfs:isDefinedBy up:
up:Genus (rdf:type owl:Thing )
rdf:type up:Rank
rdf:type owl:NamedIndividual
rdfs:labelTaxonomy rank Genus xsd:string
rdfs:isDefinedBy up:
up:Hydrogenosome (rdf:type owl:Thing )
rdf:type up:Organelle
rdf:type owl:NamedIndividual
rdfs:labelHydrogenosome xsd:string
rdfs:isDefinedBy up:
up:Inferred_from_Homology_Existence (rdf:type owl:Thing )
rdf:type up:Protein_Existence
rdf:type owl:NamedIndividual
rdfs:labelInferred from homology xsd:string
rdfs:isDefinedBy up:
up:Infraclass (rdf:type owl:Thing )
rdf:type up:Rank
rdf:type owl:NamedIndividual
rdfs:labelTaxonomy rank Infraclass xsd:string
rdfs:isDefinedBy up:
up:Infraorder (rdf:type owl:Thing )
rdf:type up:Rank
rdf:type owl:NamedIndividual
rdfs:labelTaxonomy rank Infraorder xsd:string
rdfs:isDefinedBy up:
up:Infrared_Spectroscopy (rdf:type owl:Thing )
rdf:type up:Structure_Determination_Method
rdf:type owl:NamedIndividual
rdfs:labelInfrared Spectroscopy xsd:string
rdfs:commentA type of spectroscopy that uses the Infrared portion of the electromagnetic spectrum. xsd:string
rdfs:seeAlsohttp://dbpedia.org/resource/Infrared_spectroscopy
rdfs:isDefinedBy up:
up:Kingdom (rdf:type owl:Thing )
rdf:type up:Rank
rdf:type owl:NamedIndividual
rdfs:labelTaxonomy rank Kingdom xsd:string
rdfs:isDefinedBy up:
up:LSIMS (rdf:type owl:Thing )
rdf:type up:Mass_Measurement_Method
rdf:type owl:NamedIndividual
rdfs:labelLiquid Secondary Ionization xsd:string
rdfs:isDefinedBy up:
up:MALDI (rdf:type owl:Thing )
rdf:type up:Mass_Measurement_Method
rdf:type owl:NamedIndividual
rdfs:labelMatrix-Assisted Laser Desorption xsd:string
rdfs:seeAlsohttp://dbpedia.org/resource/Matrix-assisted_laser_desorption_ionization
rdfs:isDefinedBy up:
up:Mitochondrion (rdf:type owl:Thing )
rdf:type up:Organelle
rdf:type owl:NamedIndividual
rdfs:labelMitochondion xsd:string
rdfs:isDefinedBy up:
up:NMR_Spectroscopy (rdf:type owl:Thing )
rdf:type up:Structure_Determination_Method
rdf:type owl:NamedIndividual
rdfs:labelNMR Spectroscopy xsd:string
rdfs:seeAlsohttp://dbpedia.org/resource/NMR
rdfs:isDefinedBy up:
up:Neutron_Diffraction (rdf:type owl:Thing )
rdf:type up:Structure_Determination_Method
rdf:type owl:NamedIndividual
rdfs:labelNeutron Diffraction xsd:string
rdfs:seeAlsohttp://dbpedia.org/resource/Neutron_diffraction
rdfs:isDefinedBy up:
up:Non-photosynthetic_plastid (rdf:type owl:Thing )
rdf:type up:Organelle
rdf:type owl:NamedIndividual
rdfs:labelNon-photosyntethic plastid xsd:string
rdfs:isDefinedBy up:
up:Nucleomorph (rdf:type owl:Thing )
rdf:type up:Organelle
rdf:type owl:NamedIndividual
rdfs:labelNuleomorph xsd:string
rdfs:isDefinedBy up:
up:Order (rdf:type owl:Thing )
rdf:type up:Rank
rdf:type owl:NamedIndividual
rdfs:labelTaxonomy rank Order xsd:string
rdfs:isDefinedBy up:
up:Organellar_chromatophore (rdf:type owl:Thing )
rdf:type up:Organelle
rdf:type owl:NamedIndividual
rdfs:labelOrganellar chromatophore xsd:string
rdfs:isDefinedBy up:
up:PD (rdf:type owl:Thing )
rdf:type up:Mass_Measurement_Method
rdf:type owl:NamedIndividual
rdfs:labelPlasma Desorption xsd:string
rdfs:comment xsd:string
rdfs:isDefinedBy up:
up:Parvorder (rdf:type owl:Thing )
rdf:type up:Rank
rdf:type owl:NamedIndividual
rdfs:labelTaxonomy rank Parvorder xsd:string
rdfs:isDefinedBy up:
up:Phylum (rdf:type owl:Thing )
rdf:type up:Rank
rdf:type owl:NamedIndividual
rdfs:labelTaxonomy rank Phylum xsd:string
rdfs:isDefinedBy up:
up:Plastid (rdf:type owl:Thing )
rdf:type up:Organelle
rdf:type owl:NamedIndividual
rdfs:labelPlastid xsd:string
rdfs:isDefinedBy up:
up:Potential (rdf:type owl:Thing )
rdf:type up:Status
rdf:type owl:NamedIndividual
rdfs:labelPotential
rdfs:commentindicates that there is some logical or conclusive evidence that the given annotation could apply. This non-experimental qualifier is often used to present results from protein sequence analysis software tools, which are only annotated if the result makes sense in the biological context of a given protein. A typical example is the annotation of N-glycosylation sites in secreted proteins xsd:string
rdfs:isDefinedBy up:
up:Predicted_Existence (rdf:type owl:Thing )
rdf:type up:Protein_Existence
rdf:type owl:NamedIndividual
rdfs:labelPredicted xsd:string
rdfs:commentThis is used for proteins without evidence at protein, transcript, or homology levels. xsd:string
rdfs:isDefinedBy up:
up:Prediction (rdf:type owl:Thing )
rdf:type up:Structure_Determination_Method
rdf:type owl:NamedIndividual
rdfs:labelPrediction xsd:string
rdfs:isDefinedBy up:
up:Probable (rdf:type owl:Thing )
rdf:type up:Status
rdf:type owl:NamedIndividual
rdfs:labelProbable xsd:string
rdfs:commentThe status ‘Probable’ indicates stronger evidence than the qualifier ‘Potential’. This qualifier implies that there must be at least some experimental evidence, which indicates, that the information is expected to be found in the natural environment of a protein. xsd:string
rdfs:isDefinedBy up:
up:SELDI (rdf:type owl:Thing )
rdf:type up:Mass_Measurement_Method
rdf:type owl:NamedIndividual
rdfs:labelSurface Enhanced Laser Desorption Ionization xsd:string
rdfs:isDefinedBy up:
up:Species (rdf:type owl:Thing )
rdf:type up:Rank
rdf:type owl:NamedIndividual
rdfs:labelTaxonomic rank Species xsd:string
rdfs:isDefinedBy up:
up:Species_Group (rdf:type owl:Thing )
rdf:type up:Rank
rdf:type owl:NamedIndividual
rdfs:labelTaxonomic rank Species Group xsd:string
rdfs:isDefinedBy up:
up:Species_Subgroup (rdf:type owl:Thing )
rdf:type up:Rank
rdf:type owl:NamedIndividual
rdfs:labelTaxonomic rank Species Subgroup xsd:string
rdfs:isDefinedBy up:
up:Subclass (rdf:type owl:Thing )
rdf:type up:Rank
rdf:type owl:NamedIndividual
rdfs:labelTaxonomic rank Subclass xsd:string
rdfs:isDefinedBy up:
up:Subcohort (rdf:type owl:Thing )
rdf:type up:Rank
rdf:type owl:NamedIndividual
rdfs:labelSubcohort xsd:string
rdfs:commentTaxonomy rank subcohort xsd:string
up:Subfamily (rdf:type owl:Thing )
rdf:type up:Rank
rdf:type owl:NamedIndividual
rdfs:labelTaxonomic rank Subfamily xsd:string
rdfs:isDefinedBy up:
up:Subgenus (rdf:type owl:Thing )
rdf:type up:Rank
rdf:type owl:NamedIndividual
rdfs:labelTaxonomic rank Subgenus xsd:string
rdfs:isDefinedBy up:
up:Subkingdom (rdf:type owl:Thing )
rdf:type up:Rank
rdf:type owl:NamedIndividual
rdfs:labelTaxonomic rank Subkingdom xsd:string
rdfs:isDefinedBy up:
up:Suborder (rdf:type owl:Thing )
rdf:type up:Rank
rdf:type owl:NamedIndividual
rdfs:labelTaxonomic rank Suborder xsd:string
rdfs:isDefinedBy up:
up:Subphylum (rdf:type owl:Thing )
rdf:type up:Rank
rdf:type owl:NamedIndividual
rdfs:labelTaxonomic rank Subphylum xsd:string
rdfs:isDefinedBy up:
up:Subspecies (rdf:type owl:Thing )
rdf:type up:Rank
rdf:type owl:NamedIndividual
rdfs:labelTaxonomic rank Subspecies xsd:string
rdfs:isDefinedBy up:
up:Subtribe (rdf:type owl:Thing )
rdf:type up:Rank
rdf:type owl:NamedIndividual
rdfs:labelTaxonomic rank Subtribe xsd:string
rdfs:isDefinedBy up:
up:Superclass (rdf:type owl:Thing )
rdf:type up:Rank
rdf:type owl:NamedIndividual
rdfs:labelTaxonomic rank Superclass xsd:string
rdfs:isDefinedBy up:
up:Superfamily (rdf:type owl:Thing )
rdf:type up:Rank
rdf:type owl:NamedIndividual
rdfs:labelTaxonomic rank Superfamily xsd:string
rdfs:isDefinedBy up:
up:Superkingdom (rdf:type owl:Thing )
rdf:type up:Rank
rdf:type owl:NamedIndividual
rdfs:labelTaxonomic rank Superkingdom xsd:string
rdfs:isDefinedBy up:
up:Superorder (rdf:type owl:Thing )
rdf:type up:Rank
rdf:type owl:NamedIndividual
rdfs:labelTaxonomic rank Superorder xsd:string
rdfs:isDefinedBy up:
up:Superphylum (rdf:type owl:Thing )
rdf:type up:Rank
rdf:type owl:NamedIndividual
rdfs:labelTaxonomic rank Superphylum xsd:string
rdfs:isDefinedBy up:
up:Tribe (rdf:type owl:Thing )
rdf:type up:Rank
rdf:type owl:NamedIndividual
rdfs:labelTaxonomic rank Tribe xsd:string
rdfs:isDefinedBy up:
up:Uncertain_Existence (rdf:type owl:Thing )
rdf:type up:Protein_Existence
rdf:type owl:NamedIndividual
rdfs:labelUncertain xsd:string
rdfs:isDefinedBy up:
up:Varietas (rdf:type owl:Thing )
rdf:type up:Rank
rdf:type owl:NamedIndividual
rdfs:labelTaxonomic rank Varietas xsd:string
rdfs:isDefinedBy up:
up:X-Ray_Crystallography (rdf:type owl:Thing )
rdf:type up:Structure_Determination_Method
rdf:type owl:NamedIndividual
rdfs:labelX-Ray Crystallography xsd:string
rdfs:commentA technique in crystallography in which the pattern produced by the diffraction of x-rays through the closely spaced lattice of atoms in a crystal is recorded and then analyzed to reveal the nature of that lattice. xsd:string
rdfs:seeAlsohttp://dbpedia.org/resource/X-ray_crystallography
rdfs:isDefinedBy up:

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