| DNA-stable isotope probing integrated with metagenomics for retrieval of biphenyl dioxygenase genes from polychlorinated biphenyl-contaminated river sediment. Sul W.J., Park J., Quensen J.F., Rodrigues J.L., Seliger L., Tsoi T.V., Zylstra G.J., Tiedje J.M.
Appl. Environ. Microbiol. 75:5501-5506(2009) · UniProtKB (28) |
| Worldwide prevalence of class 2 integrases outside the clinical setting is associated with human impact. Rodriguez-Minguela C.M., Apajalahti J.H., Chai B., Cole J.R., Tiedje J.M.
Appl. Environ. Microbiol. 75:5100-5110(2009) · UniProtKB (218) |
| Multi-locus real-time PCR for quantitation of bacteria in the environment reveals Exiguobacterium to be prevalent in permafrost. Rodrigues D.F., Tiedje J.M.
FEMS Microbiol. Ecol. 59:489-499(2007) · UniProtKB (43) |
| Burkholderia xenovorans LB400 harbors a multi-replicon, 9.73-Mbp genome shaped for versatility. Chain P.S.G., Denef V.J., Konstantinidis K.T., Vergez L.M., Agullo L., Reyes V.L., Hauser L., Cordova M., Gomez L., Gonzalez M. et al.
Proc. Natl. Acad. Sci. U.S.A. 103:15280-15287(2006) · UniProtKB (8,591) |
| Psychrobacter cryohalolentis sp. nov. and Psychrobacter arcticus sp. nov., isolated from Siberian permafrost. Bakermans C., Ayala-del-Rio H.L., Ponder M.A., Vishnivetskaya T., Gilichinsky D., Thomashow M.F., Tiedje J.M.
Int. J. Syst. Evol. Microbiol. 56:1285-1291(2006) · UniProtKB (15) |
| Application of a recA gene-based identification approach to the maize rhizosphere reveals novel diversity in Burkholderia species. Payne G.W., Ramette A., Rose H.L., Weightman A.J., Jones T.H., Tiedje J.M., Mahenthiralingam E.
FEMS Microbiol. Lett. 259:126-132(2006) · UniProtKB (34) |
| Degradation of aroclor 1242 dechlorination products in sediments by Burkholderia xenovorans LB400(ohb) and Rhodococcus sp. strain RHA1(fcb). Rodrigues J.L., Kachel C.A., Aiello M.R., Quensen J.F., Maltseva O.V., Tsoi T.V., Tiedje J.M.
Appl. Environ. Microbiol. 72:2476-2482(2006) · UniProtKB (9) |
| Characterization of Exiguobacterium isolates from the Siberian permafrost. Description of Exiguobacterium sibiricum sp. nov. Rodrigues D.F., Goris J., Vishnivetskaya T., Gilichinsky D., Thomashow M.F., Tiedje J.M.
Extremophiles 10:285-294(2006) · UniProtKB (28) |
| Species abundance and diversity of Burkholderia cepacia complex in the environment. Ramette A., LiPuma J.J., Tiedje J.M.
Appl. Environ. Microbiol. 71:1193-1201(2005) · UniProtKB (7) |
| Nitrous oxide reductase (nosZ) gene fragments differ between native and cultivated Michigan soils. Stres B., Mahne I., Avgustin G., Tiedje J.M.
Appl. Environ. Microbiol. 70:301-309(2004) · UniProtKB (48) |
| Molecular diversity of denitrifying genes in continental margin sediments within the oxygen-deficient zone off the Pacific coast of Mexico. Liu X., Tiquia S.M., Holguin G., Wu L., Nold S.C., Devol A.H., Luo K., Palumbo A.V., Tiedje J.M., Zhou J.
Appl. Environ. Microbiol. 69:3549-3560(2003) · UniProtKB (75) |
| Nitric oxide reductase (norB) genes from pure cultures and environmental samples. Braker G., Tiedje J.M.
Appl. Environ. Microbiol. 69:3476-3483(2003) · UniProtKB (51) |
| Molecular diversity and characterization of nitrite reductase gene fragments (nirK and nirS) from nitrate- and uranium-contaminated groundwater. Yan T., Fields M.W., Wu L., Zu Y., Tiedje J.M., Zhou J.
Environ. Microbiol. 5:13-24(2003) · UniProtKB (184) |
| tfdA-like genes in 2,4-dichlorophenoxyacetic acid-degrading bacteria belonging to the Bradyrhizobium-Agromonas-Nitrobacter-Afipia cluster in alpha-Proteobacteria. Itoh K., Kanda R., Sumita Y., Kim H., Kamagata Y., Suyama K., Yamamoto H., Hausinger R.P., Tiedje J.M.
Appl. Environ. Microbiol. 68:3449-3454(2002) · UniProtKB (4) |
| Diversity of nitrite reductase (nirK and nirS) gene fragments in forested upland and wetland soils. Prieme A., Braker G., Tiedje J.M.
Appl. Environ. Microbiol. 68:1893-1900(2002) · UniProtKB (116) |
| Methylocapsa acidiphila gen. nov., sp. nov., a novel methane-oxidizing and dinitrogen-fixing acidophilic bacterium from Sphagnum bog. Dedysh S.N., Khmelenina V.N., Suzina N.E., Trotsenko Y.A., Semrau J.D., Liesack W., Tiedje J.M.
Int. J. Syst. Evol. Microbiol. 52:251-261(2002) · UniProtKB (2) |
| Novel 2,4-dichlorophenoxyacetic acid degradation genes from oligotrophic Bradyrhizobium sp. strain HW13 isolated from a pristine environment. Kitagawa W., Takami S., Miyauchi K., Masai E., Kamagata Y., Tiedje J.M., Fukuda M.
J. Bacteriol. 184:509-518(2002) · UniProtKB (5) |
| DNA/DNA hybridization to microarrays reveals gene-specific differences between closely related microbial genomes. Murray A.E., Lies D., Li G., Nealson K., Zhou J., Tiedje J.M.
Proc. Natl. Acad. Sci. U.S.A. 98:9853-9858(2001) · UniProtKB (5) |
| Pacific Northwest marine sediments contain ammonia-oxidizing bacteria in the beta subdivision of the Proteobacteria. Nold S.C., Zhou J., Devol A.H., Tiedje J.M.
Appl. Environ. Microbiol. 66:4532-4535(2000) · UniProtKB (18) |
| Methylocella palustris gen. nov., sp. nov., a new methane-oxidizing acidophilic bacterium from peat bogs, representing a novel subtype of serine-pathway methanotrophs. Dedysh S.N., Liesack W., Khmelenina V.N., Suzina N.E., Trotsenko Y.A., Semrau J.D., Bares A.M., Panikov N.S., Tiedje J.M.
Int. J. Syst. Evol. Microbiol. 50:955-969(2000) · UniProtKB (2) |
| Nitrite reductase genes (nirK and nirS) as functional markers to investigate diversity of denitrifying bacteria in pacific northwest marine sediment communities. Braker G., Zhou J., Wu L., Devol A.H., Tiedje J.M.
Appl. Environ. Microbiol. 66:2096-2104(2000) · UniProtKB (57) |
| Cloning, expression, and nucleotide sequence of the Pseudomonas aeruginosa 142 ohb genes coding for oxygenolytic ortho dehalogenation of halobenzoates. Tsoi T.V., Plotnikova E.G., Cole J.R., Guerin W.F., Bagdasarian M., Tiedje J.M.
Appl. Environ. Microbiol. 65:2151-2162(1999) · UniProtKB (6) |
| Isolation of acidophilic methane-oxidizing bacteria from northern peat wetlands. Dedysh S.N., Panikov N.S., Liesack W., Grosskopf R., Zhou J., Tiedje J.M.
Science 282:281-284(1998) · UniProtKB (1) |
| Horizontal spread of mer operons among gram-positive bacteria in natural environments. Bogdanova E.S., Bass I.A., Minakhin L.S., Petrova M.A., Mindlin S.Z., Volodin A.A., Kalyaeva E.S., Tiedje J.M., Hobman J.L., Brown N.L. et al.
Microbiology (Reading, Engl.) 144:609-620(1998) · UniProtKB (27) |
| Acidophilic methanotrophic communities from Sphagnum peat bogs. Dedysh S.N., Panikov N.S., Tiedje J.M.
Appl. Environ. Microbiol. 64:922-929(1998) · UniProtKB (2) |
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