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Three Arabidopsis SnRK2 protein kinases, SRK2D/SnRK2.2, SRK2E/SnRK2.6/OST1 and SRK2I/SnRK2.3, involved in ABA signaling are essential for the control of seed development and dormancy.

Nakashima K., Fujita Y., Kanamori N., Katagiri T., Umezawa T., Kidokoro S., Maruyama K., Yoshida T., Ishiyama K., Kobayashi M. et al.

Plant Cell Physiol. 50:1345-1363(2009) · Mapped (4)

Metabolic pathways involved in cold acclimation identified by integrated analysis of metabolites and transcripts regulated by DREB1A and DREB2A.

Maruyama K., Takeda M., Kidokoro S., Yamada K., Sakuma Y., Urano K., Fujita M., Yoshiwara K., Matsukura S., Morishita Y. et al.

Plant Physiol. 150:1972-1980(2009) · Mapped (4)

Inefficient double-strand DNA break repair is associated with increased fasciation in Arabidopsis BRCA2 mutants.

Abe K., Osakabe K., Ishikawa Y., Tagiri A., Yamanouchi H., Takyuu T., Yoshioka T., Ito T., Kobayashi M., Shinozaki K. et al.

J. Exp. Bot. 60:2751-2761(2009) · Mapped (2)

Analysis of multiple occurrences of alternative splicing events in Arabidopsis thaliana using novel sequenced full-length cDNAs.

Iida K., Fukami-Kobayashi K., Toyoda A., Sakaki Y., Kobayashi M., Seki M., Shinozaki K.

DNA Res. 16:155-164(2009) · UniProtKB (85)

A simple and high-sensitivity method for analysis of ubiquitination and polyubiquitination based on wheat cell-free protein synthesis.

Takahashi H., Nozawa A., Seki M., Shinozaki K., Endo Y., Sawasaki T.

BMC Plant Biol. 9:39-39(2009) · Mapped (5)

STOP1 regulates multiple genes that protect Arabidopsis from proton and aluminum toxicities.

Sawaki Y., Iuchi S., Kobayashi Y., Kobayashi Y., Ikka T., Sakurai N., Fujita M., Shinozaki K., Shibata D., Kobayashi M. et al.

Plant Physiol. 150:281-294(2009) · UniProtKB (2) · Mapped (3)

Pentatricopeptide repeat proteins with the DYW motif have distinct molecular functions in RNA editing and RNA cleavage in Arabidopsis chloroplasts.

Okuda K., Chateigner-Boutin A.L., Nakamura T., Delannoy E., Sugita M., Myouga F., Motohashi R., Shinozaki K., Small I., Shikanai T.

Plant Cell 21:146-156(2009) · Mapped (3)

Genome-wide suppression of aberrant mRNA-like noncoding RNAs by NMD in Arabidopsis.

Kurihara Y., Matsui A., Hanada K., Kawashima M., Ishida J., Morosawa T., Tanaka M., Kaminuma E., Mochizuki Y., Matsushima A. et al.

Proc. Natl. Acad. Sci. U.S.A. 106:2453-2458(2009) · Mapped (3)

Large-scale collection and annotation of full-length enriched cDNAs from a model halophyte, Thellungiella halophila.

Taji T., Sakurai T., Mochida K., Ishiwata A., Kurotani A., Totoki Y., Toyoda A., Sakaki Y., Seki M., Ono H. et al.

BMC Plant Biol. 8:115-115(2008) · Mapped (28)

A heterocomplex of iron superoxide dismutases defends chloroplast nucleoids against oxidative stress and is essential for chloroplast development in Arabidopsis.

Myouga F., Hosoda C., Umezawa T., Iizumi H., Kuromori T., Motohashi R., Shono Y., Nagata N., Ikeuchi M., Shinozaki K.

Plant Cell 20:3148-3162(2008) · Mapped (6)

Identification of the candidate genes regulated by RNA-directed DNA methylation in Arabidopsis.

Kurihara Y., Matsui A., Kawashima M., Kaminuma E., Ishida J., Morosawa T., Mochizuki Y., Kobayashi N., Toyoda T., Shinozaki K. et al.

Biochem. Biophys. Res. Commun. 376:553-557(2008) · Mapped (11)

Alterations of lysine modifications on the histone H3 N-tail under drought stress conditions in Arabidopsis thaliana.

Kim J.M., To T.K., Ishida J., Morosawa T., Kawashima M., Matsui A., Toyoda T., Kimura H., Shinozaki K., Seki M.

Plant Cell Physiol. 49:1580-1588(2008) · Mapped (5)

The glycerophosphoryl diester phosphodiesterase-like proteins SHV3 and its homologs play important roles in cell wall organization.

Hayashi S., Ishii T., Matsunaga T., Tominaga R., Kuromori T., Wada T., Shinozaki K., Hirayama T.

Plant Cell Physiol. 49:1522-1535(2008) · Mapped (2)

Characterization of expressed sequence tags from a full-length enriched cDNA library of Cryptomeria japonica male strobili.

Futamura N., Totoki Y., Toyoda A., Igasaki T., Nanjo T., Seki M., Sakaki Y., Mari A., Shinozaki K., Shinohara K.

BMC Genomics 9:383-383(2008) · UniProtKB (12)

Interleukin-13 augments bronchial smooth muscle contractility with an up-regulation of RhoA protein.

Chiba Y., Nakazawa S., Todoroki M., Shinozaki K., Sakai H., Misawa M.

Am. J. Respir. Cell Mol. Biol. 40:159-167(2009) · Mapped (13)

Antagonistic interaction between systemic acquired resistance and the abscisic acid-mediated abiotic stress response in Arabidopsis.

Yasuda M., Ishikawa A., Jikumaru Y., Seki M., Umezawa T., Asami T., Maruyama-Nakashita A., Kudo T., Shinozaki K., Yoshida S. et al.

Plant Cell 20:1678-1692(2008) · Mapped (2)

Arabidopsis DREB2A-interacting proteins function as RING E3 ligases and negatively regulate plant drought stress-responsive gene expression.

Qin F., Sakuma Y., Tran L.S., Maruyama K., Kidokoro S., Fujita Y., Fujita M., Umezawa T., Sawano Y., Miyazono K. et al.

Plant Cell 20:1693-1707(2008) · Mapped (10)

Drought induction of Arabidopsis 9-cis-epoxycarotenoid dioxygenase occurs in vascular parenchyma cells.

Endo A., Sawada Y., Takahashi H., Okamoto M., Ikegami K., Koiwai H., Seo M., Toyomasu T., Mitsuhashi W., Shinozaki K. et al.

Plant Physiol. 147:1984-1993(2008) · Mapped (6)

CRR23/NdhL is a subunit of the chloroplast NAD(P)H dehydrogenase complex in Arabidopsis.

Shimizu H., Peng L., Myouga F., Motohashi R., Shinozaki K., Shikanai T.

Plant Cell Physiol. 49:835-842(2008) · Mapped (1)

Functional analysis of an Arabidopsis heat-shock transcription factor HsfA3 in the transcriptional cascade downstream of the DREB2A stress-regulatory system.

Yoshida T., Sakuma Y., Todaka D., Maruyama K., Qin F., Mizoi J., Kidokoro S., Fujita Y., Shinozaki K., Yamaguchi-Shinozaki K.

Biochem. Biophys. Res. Commun. 368:515-521(2008) · UniProtKB (1) · Mapped (2)

The Arabidopsis SDG4 contributes to the regulation of pollen tube growth by methylation of histone H3 lysines 4 and 36 in mature pollen.

Cartagena J.A., Matsunaga S., Seki M., Kurihara D., Yokoyama M., Shinozaki K., Fujimoto S., Azumi Y., Uchiyama S., Fukui K.

Dev. Biol. 315:355-368(2008) · Mapped (122)

Functional analysis of AHK1/ATHK1 and cytokinin receptor histidine kinases in response to abscisic acid, drought, and salt stress in Arabidopsis.

Tran L.S., Urao T., Qin F., Maruyama K., Kakimoto T., Shinozaki K., Yamaguchi-Shinozaki K.

Proc. Natl. Acad. Sci. U.S.A. 104:20623-20628(2007) · Mapped (7)

Plants tolerant of high boron levels.

Miwa K., Takano J., Omori H., Seki M., Shinozaki K., Fujiwara T.

Science 318:1417-1417(2007) · Mapped (2)

An Arabidopsis homolog of the bacterial peptidoglycan synthesis enzyme MurE has an essential role in chloroplast development.

Garcia M., Myouga F., Takechi K., Sato H., Nabeshima K., Nagata N., Takio S., Shinozaki K., Takano H.

Plant J. 53:924-934(2008) · Mapped (1)

Arabidopsis MALE STERILITY1 encodes a PHD-type transcription factor and regulates pollen and tapetum development.

Ito T., Nagata N., Yoshiba Y., Ohme-Takagi M., Ma H., Shinozaki K.

Plant Cell 19:3549-3562(2007) · Mapped (1)

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