| The role of amino acid residues in the active site of L-methionine gamma-lyase from Pseudomonas putida. Fukumoto M., Kudou D., Murano S., Shiba T., Sato D., Tamura T., Harada S., Inagaki K.
Biosci. Biotechnol. Biochem. 76:1275-1284(2012) · Mapped (1) |
| Crystal structure of mitochondrial quinol-fumarate reductase from the parasitic nematode Ascaris suum. Shimizu H., Osanai A., Sakamoto K., Inaoka D.K., Shiba T., Harada S., Kita K.
J. Biochem. 151:589-592(2012) · UniProtKB (3) · Mapped (1) |
| High-fat diet-induced obesity and insulin resistance were ameliorated via enhanced fecal bile acid excretion in tumor necrosis factor-alpha receptor knockout mice. Yamato M., Shiba T., Ide T., Seri N., Kudo W., Ando M., Yamada K., Kinugawa S., Tsutsui H.
Mol. Cell. Biochem. 359:161-167(2012) · Mapped (4) |
| A conserved lysine residue in the crenarchaea-specific loop is important for the crenarchaeal splicing endonuclease activity. Okuda M., Shiba T., Inaoka D.K., Kita K., Kurisu G., Mineki S., Harada S., Watanabe Y., Yoshinari S.
J. Mol. Biol. 405:92-104(2011) · UniProtKB (1) · Mapped (1) |
| Asymmetric dimeric structure of ferredoxin-NAD(P)+ oxidoreductase from the green sulfur bacterium Chlorobaculum tepidum: implications for binding ferredoxin and NADP+. Muraki N., Seo D., Shiba T., Sakurai T., Kurisu G.
J. Mol. Biol. 401:403-414(2010) · Mapped (1) |
| Opposite roles of DMRT1 and its W-linked paralogue, DM-W, in sexual dimorphism of Xenopus laevis: implications of a ZZ/ZW-type sex-determining system. Yoshimoto S., Ikeda N., Izutsu Y., Shiba T., Takamatsu N., Ito M.
Development 137:2519-2526(2010) · UniProtKB (2) |
| Negative feedback in noncanonical NF-kappaB signaling modulates NIK stability through IKKalpha-mediated phosphorylation. Razani B., Zarnegar B., Ytterberg A.J., Shiba T., Dempsey P.W., Ware C.F., Loo J.A., Cheng G.
Sci. Signal. 3:RA41-RA41(2010) · UniProtKB (2) · Mapped (5) |
| X-ray crystal structure of the light-independent protochlorophyllide reductase. Muraki N., Nomata J., Ebata K., Mizoguchi T., Shiba T., Tamiaki H., Kurisu G., Fujita Y.
Nature 465:110-114(2010) · Mapped (2) |
| Tumor necrosis factor-related apoptosis-inducing ligand 1 (TRAIL1) enhances the transition of red blood cells from the larval to adult type during metamorphosis in Xenopus. Tamura K., Mawaribuchi S., Yoshimoto S., Shiba T., Takamatsu N., Ito M.
Blood 115:850-859(2010) · UniProtKB (2) |
| Functional importance of crenarchaea-specific extra-loop revealed by an X-ray structure of a heterotetrameric crenarchaeal splicing endonuclease. Yoshinari S., Shiba T., Inaoka D.K., Itoh T., Kurisu G., Harada S., Kita K., Watanabe Y.
Nucleic Acids Res. 37:4787-4798(2009) · UniProtKB (1) · Mapped (1) |
| JNK-binding protein 1 regulates NF-kappaB activation through TRAF2 and TAK1. Yamaguchi T., Miyashita C., Koyano S., Kanda H., Yoshioka K., Shiba T., Takamatsu N., Ito M.
Cell Biol. Int. 33:364-368(2009) · Mapped (2) |
| Xenopus W-linked DM-W induces Foxl2 and Cyp19 expression during ovary formation. Okada E., Yoshimoto S., Ikeda N., Kanda H., Tamura K., Shiba T., Takamatsu N., Ito M.
Sex Dev 3:38-42(2009) · UniProtKB (1) |
| Noncanonical NF-kappaB activation requires coordinated assembly of a regulatory complex of the adaptors cIAP1, cIAP2, TRAF2 and TRAF3 and the kinase NIK. Zarnegar B.J., Wang Y., Mahoney D.J., Dempsey P.W., Cheung H.H., He J., Shiba T., Yang X., Yeh W.C., Mak T.W. et al.
Nat. Immunol. 9:1371-1378(2008) · UniProtKB (2) · Mapped (21) |
| Structures of Trypanosoma cruzi dihydroorotate dehydrogenase complexed with substrates and products: atomic resolution insights into mechanisms of dihydroorotate oxidation and fumarate reduction. Inaoka D.K., Sakamoto K., Shimizu H., Shiba T., Kurisu G., Nara T., Aoki T., Kita K., Harada S.
Biochemistry 47:10881-10891(2008) · UniProtKB (1) |
| Tumor necrosis factor-alpha attenuates thyroid hormone-induced apoptosis in vascular endothelial cell line XLgoo established from Xenopus tadpole tails. Mawaribuchi S., Tamura K., Okano S., Takayama S., Yaoita Y., Shiba T., Takamatsu N., Ito M.
Endocrinology 149:3379-3389(2008) · UniProtKB (2) |
| Mammalian Sox15 gene: promoter analysis and implications for placental evolution. Yamada K., Kanda H., Aihara T., Takamatsu N., Shiba T., Ito M.
Zool. Sci. 25:313-320(2008) · Mapped (3) |
| A W-linked DM-domain gene, DM-W, participates in primary ovary development in Xenopus laevis. Yoshimoto S., Okada E., Umemoto H., Tamura K., Uno Y., Nishida-Umehara C., Matsuda Y., Takamatsu N., Shiba T., Ito M.
Proc. Natl. Acad. Sci. U.S.A. 105:2469-2474(2008) · UniProtKB (2) |
| Molecular basis for autoregulatory interaction between GAE domain and hinge region of GGA1. Inoue M., Shiba T., Ihara K., Yamada Y., Hirano S., Kamikubo H., Kataoka M., Kawasaki M., Kato R., Nakayama K. et al.
Traffic 8:904-913(2007) · Mapped (16) |
| Expression and promoter analysis of Xenopus DMRT1 and functional characterization of the transactivation property of its protein. Yoshimoto S., Okada E., Oishi T., Numagami R., Umemoto H., Tamura K., Kanda H., Shiba T., Takamatsu N., Ito M.
Dev. Growth Differ. 48:597-603(2006) · UniProtKB (2) |
| Structural basis for Rab11-dependent membrane recruitment of a family of Rab11-interacting protein 3 (FIP3)/Arfophilin-1. Shiba T., Koga H., Shin H.-W., Kawasaki M., Kato R., Nakayama K., Wakatsuki S.
Proc. Natl. Acad. Sci. U.S.A. 103:15416-15421(2006) · UniProtKB (4) · Mapped (6) |
| Crystal structure of GlcAT-S, a human glucuronyltransferase, involved in the biosynthesis of the HNK-1 carbohydrate epitope. Shiba T., Kakuda S., Ishiguro M., Morita I., Oka S., Kawasaki T., Wakatsuki S., Kato R.
Proteins 65:499-508(2006) · UniProtKB (1) · Mapped (2) |
| Regulation of antiviral responses by a direct and specific interaction between TRAF3 and Cardif. Saha S.K., Pietras E.M., He J.Q., Kang J.R., Liu S.Y., Oganesyan G., Shahangian A., Zarnegar B., Shiba T.L., Wang Y. et al.
EMBO J. 25:3257-3263(2006) · Mapped (8) |
| Sox15 enhances trophoblast giant cell differentiation induced by Hand1 in mouse placenta. Yamada K., Kanda H., Tanaka S., Takamatsu N., Shiba T., Ito M.
Differentiation 74:212-221(2006) · Mapped (12) |
| Structural basis of carbohydrate transfer activity by human UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferase (pp-GalNAc-T10). Kubota T., Shiba T., Sugioka S., Furukawa S., Sawaki H., Kato R., Wakatsuki S., Narimatsu H.
J. Mol. Biol. 359:708-727(2006) · UniProtKB (1) |
| Xenopus death-domain-containing proteins FADD and RIP1 synergistically activate JNK and NF-kappaB. Ishizawa Y.H., Tamura K., Yamaguchi T., Matsumoto K., Komiyama M., Takamatsu N., Shiba T., Ito M.
Biol. Cell 98:465-478(2006) · UniProtKB (2) |
