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Functional importance of crenarchaea-specific extra-loop revealed by an X-ray structure of a heterotetrameric crenarchaeal splicing endonuclease.

Yoshinari S., Shiba T., Inaoka D.K., Itoh T., Kurisu G., Harada S., Kita K., Watanabe Y.

Nucleic Acids Res. 37:4787-4798(2009) · Mapped (2)

JNK-binding protein 1 regulates NF-kappaB activation through TRAF2 and TAK1.

Yamaguchi T., Miyashita C., Koyano S., Kanda H., Yoshioka K., Shiba T., Takamatsu N., Ito M.

Cell Biol. Int. 33:364-368(2009) · Mapped (2)

Noncanonical NF-kappaB activation requires coordinated assembly of a regulatory complex of the adaptors cIAP1, cIAP2, TRAF2 and TRAF3 and the kinase NIK.

Zarnegar B.J., Wang Y., Mahoney D.J., Dempsey P.W., Cheung H.H., He J., Shiba T., Yang X., Yeh W.C., Mak T.W. et al.

Nat. Immunol. 9:1371-1378(2008) · Mapped (29)

Tumor necrosis factor-alpha attenuates thyroid hormone-induced apoptosis in vascular endothelial cell line XLgoo established from Xenopus tadpole tails.

Mawaribuchi S., Tamura K., Okano S., Takayama S., Yaoita Y., Shiba T., Takamatsu N., Ito M.

Endocrinology 149:3379-3389(2008) · UniProtKB (2)

A W-linked DM-domain gene, DM-W, participates in primary ovary development in Xenopus laevis.

Yoshimoto S., Okada E., Umemoto H., Tamura K., Uno Y., Nishida-Umehara C., Matsuda Y., Takamatsu N., Shiba T., Ito M.

Proc. Natl. Acad. Sci. U.S.A. 105:2469-2474(2008) · UniProtKB (1)

Molecular basis for autoregulatory interaction between GAE domain and hinge region of GGA1.

Inoue M., Shiba T., Ihara K., Yamada Y., Hirano S., Kamikubo H., Kataoka M., Kawasaki M., Kato R., Nakayama K. et al.

Traffic 8:904-913(2007) · Mapped (9)

Expression and promoter analysis of Xenopus DMRT1 and functional characterization of the transactivation property of its protein.

Yoshimoto S., Okada E., Oishi T., Numagami R., Umemoto H., Tamura K., Kanda H., Shiba T., Takamatsu N., Ito M.

Dev. Growth Differ. 48:597-603(2006) · UniProtKB (2)

Structural basis for Rab11-dependent membrane recruitment of a family of Rab11-interacting protein 3 (FIP3)/Arfophilin-1.

Shiba T., Koga H., Shin H.W., Kawasaki M., Kato R., Nakayama K., Wakatsuki S.

Proc. Natl. Acad. Sci. U.S.A. 103:15416-15421(2006) · Mapped (8)

Crystal structure of GlcAT-S, a human glucuronyltransferase, involved in the biosynthesis of the HNK-1 carbohydrate epitope.

Shiba T., Kakuda S., Ishiguro M., Morita I., Oka S., Kawasaki T., Wakatsuki S., Kato R.

Proteins 65:499-508(2006) · Mapped (3)

Regulation of antiviral responses by a direct and specific interaction between TRAF3 and Cardif.

Saha S.K., Pietras E.M., He J.Q., Kang J.R., Liu S.Y., Oganesyan G., Shahangian A., Zarnegar B., Shiba T.L., Wang Y. et al.

EMBO J. 25:3257-3263(2006) · Mapped (7)

Sox15 enhances trophoblast giant cell differentiation induced by Hand1 in mouse placenta.

Yamada K., Kanda H., Tanaka S., Takamatsu N., Shiba T., Ito M.

Differentiation 74:212-221(2006) · Mapped (10)

Structural basis of carbohydrate transfer activity by human UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferase (pp-GalNAc-T10).

Kubota T., Shiba T., Sugioka S., Furukawa S., Sawaki H., Kato R., Wakatsuki S., Narimatsu H.

J. Mol. Biol. 359:708-727(2006) · UniProtKB (1)

Xenopus death-domain-containing proteins FADD and RIP1 synergistically activate JNK and NF-kappaB.

Ishizawa Y.H., Tamura K., Yamaguchi T., Matsumoto K., Komiyama M., Takamatsu N., Shiba T., Ito M.

Biol. Cell 98:465-478(2006) · UniProtKB (2)

Structural basis for recognition of ubiquitinated cargo by Tom1-GAT domain.

Akutsu M., Kawasaki M., Katoh Y., Shiba T., Yamaguchi Y., Kato R., Kato K., Nakayama K., Wakatsuki S.

FEBS Lett. 579:5385-5391(2005) · Mapped (2)

Inorganic polyphosphate in the social life of Myxococcus xanthus: motility, development, and predation.

Zhang H., Rao N.N., Shiba T., Kornberg A.

Proc. Natl. Acad. Sci. U.S.A. 102:13416-13420(2005) · UniProtKB (2)

Isolation of multidrug-resistant Stenotrophomonas maltophilia from cultured yellowtail (Seriola quinqueradiata) from a marine fish farm.

Furushita M., Okamoto A., Maeda T., Ohta M., Shiba T.

Appl. Environ. Microbiol. 71:5598-5600(2005) · UniProtKB (12)

Molecular mechanism of ubiquitin recognition by GGA3 GAT domain.

Kawasaki M., Shiba T., Shiba Y., Yamaguchi Y., Matsugaki N., Igarashi N., Suzuki M., Kato R., Kato K., Nakayama K. et al.

Genes Cells 10:639-654(2005) · Mapped (2)

Polyphosphate:AMP phosphotransferase as a polyphosphate-dependent nucleoside monophosphate kinase in Acinetobacter johnsonii 210A.

Shiba T., Itoh H., Kameda A., Kobayashi K., Kawazoe Y., Noguchi T.

J. Bacteriol. 187:1859-1865(2005) · UniProtKB (1)

The complete genomic sequence of Nocardia farcinica IFM 10152.

Ishikawa J., Yamashita A., Mikami Y., Hoshino Y., Kurita H., Hotta K., Shiba T., Hattori M.

Proc. Natl. Acad. Sci. U.S.A. 101:14925-14930(2004) · UniProtKB (5,943)

Insights into the phosphoregulation of beta-secretase sorting signal by the VHS domain of GGA1.

Shiba T., Kametaka S., Kawasaki M., Shibata M., Waguri S., Uchiyama Y., Wakatsuki S.

Traffic 5:437-448(2004) · Mapped (2)

Analysis of gene structures and promoter activities of the chipmunk alpha(1)-antitrypsin-like genes.

Nakazawa A., Inaba Y., Kamijima A., Kondo N., Ito M., Shiba T., Takamatsu N.

Gene 329:71-79(2004) · UniProtKB (3)

Structural basis for acceptor substrate recognition of a human glucuronyltransferase, GlcAT-P, an enzyme critical in the biosynthesis of the carbohydrate epitope HNK-1.

Kakuda S., Shiba T., Ishiguro M., Tagawa H., Oka S., Kajihara Y., Kawasaki T., Wakatsuki S., Kato R.

J. Biol. Chem. 279:22693-22703(2004) · UniProtKB (1) · Mapped (2)

Xenopus death receptor-M1 and -M2, new members of the tumor necrosis factor receptor superfamily, trigger apoptotic signaling by differential mechanisms.

Tamura K., Noyama T., Ishizawa Y.H., Takamatsu N., Shiba T., Ito M.

J. Biol. Chem. 279:7629-7635(2004) · UniProtKB (2)

GAT (GGA and Tom1) domain responsible for ubiquitin binding and ubiquitination.

Shiba Y., Katoh Y., Shiba T., Yoshino K., Takatsu H., Kobayashi H., Shin H.-W., Wakatsuki S., Nakayama K.

J. Biol. Chem. 279:7105-7111(2004) · UniProtKB (2)

Similarity of tetracycline resistance genes isolated from fish farm bacteria to those from clinical isolates.

Furushita M., Shiba T., Maeda T., Yahata M., Kaneoka A., Takahashi Y., Torii K., Hasegawa T., Ohta M.

Appl. Environ. Microbiol. 69:5336-5342(2003) · UniProtKB (24)

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