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Tools for neuroanatomy and neurogenetics in Drosophila.

Pfeiffer B.D., Jenett A., Hammonds A.S., Ngo T.T., Misra S., Murphy C., Scully A., Carlson J.W., Wan K.H., Laverty T.R. et al.

Proc. Natl. Acad. Sci. U.S.A. 105:9715-9720(2008) · Mapped (15)

Drosophila microRNAs exhibit diverse spatial expression patterns during embryonic development.

Aboobaker A.A., Tomancak P., Patel N., Rubin G.M., Lai E.C.

Proc. Natl. Acad. Sci. U.S.A. 102:18017-18022(2005) · Mapped (13)

Cathepsin D-deficient Drosophila recapitulate the key features of neuronal ceroid lipofuscinoses.

Myllykangas L., Tyynela J., Page-McCaw A., Rubin G.M., Haltia M.J., Feany M.B.

Neurobiol. Dis. 19:194-199(2005) · Mapped (1)

Pervasive regulation of Drosophila Notch target genes by GY-box-, Brd-box-, and K-box-class microRNAs.

Lai E.C., Tam B., Rubin G.M.

Genes Dev. 19:1067-1080(2005) · Mapped (46)

The ubiquitin ligase Drosophila Mind bomb promotes Notch signaling by regulating the localization and activity of Serrate and Delta.

Lai E.C., Roegiers F., Qin X., Jan Y.N., Rubin G.M.

Development 132:2319-2332(2005) · UniProtKB (3) · Mapped (18)

Identification of putative noncoding polyadenylated transcripts in Drosophila melanogaster.

Tupy J.L., Bailey A.M., Dailey G., Evans-Holm M., Siebel C.W., Misra S., Celniker S.E., Rubin G.M.

Proc. Natl. Acad. Sci. U.S.A. 102:5495-5500(2005) · Mapped (4)

A computational and experimental approach to validating annotations and gene predictions in the Drosophila melanogaster genome.

Yandell M., Bailey A.M., Misra S., Shu S., Wiel C., Evans-Holm M., Celniker S.E., Rubin G.M.

Proc. Natl. Acad. Sci. U.S.A. 102:1566-1571(2005) · Mapped (59)

Computational identification of developmental enhancers: conservation and function of transcription factor binding-site clusters in Drosophila melanogaster and Drosophila pseudoobscura.

Berman B.P., Pfeiffer B.D., Laverty T.R., Salzberg S.L., Rubin G.M., Eisen M.B., Celniker S.E.

Genome Biol. 5:R61-R61(2004) · Mapped (24)

The BDGP gene disruption project: single transposon insertions associated with 40% of Drosophila genes.

Bellen H.J., Levis R.W., Liao G., He Y., Carlson J.W., Tsang G., Evans-Holm M., Hiesinger P.R., Schulze K.L., Rubin G.M. et al.

Genetics 167:761-781(2004) · Mapped (213)

Drosophila melanogaster MNK/Chk2 and p53 regulate multiple DNA repair and apoptotic pathways following DNA damage.

Brodsky M.H., Weinert B.T., Tsang G., Rong Y.S., McGinnis N.M., Golic K.G., Rio D.C., Rubin G.M.

Mol. Cell. Biol. 24:1219-1231(2004) · UniProtKB (3) · Mapped (65)

The Drosophila synaptotagmin-like protein bitesize is required for growth and has mRNA localization sequences within its open reading frame.

Serano J., Rubin G.M.

Proc. Natl. Acad. Sci. U.S.A. 100:13368-13373(2003) · UniProtKB (3) · Mapped (6)

Quantitative analysis of bristle number in Drosophila mutants identifies genes involved in neural development.

Norga K.K., Gurganus M.C., Dilda C.L., Yamamoto A., Lyman R.F., Patel P.H., Rubin G.M., Hoskins R.A., Mackay T.F., Bellen H.J.

Curr. Biol. 13:1388-1396(2003) · Mapped (231)

Computational identification of Drosophila microRNA genes.

Lai E.C., Tomancak P., Williams R.W., Rubin G.M.

Genome Biol. 4:R42-R42(2003) · Mapped (95)

Systematic determination of patterns of gene expression during Drosophila embryogenesis.

Tomancak P., Beaton A., Weiszmann R., Kwan E., Shu S., Lewis S.E., Richards S., Ashburner M., Hartenstein V., Celniker S.E. et al.

Genome Biol. 3:RESEARCH0088-RESEARCH0088(2002) · Mapped (49)

Computational analysis of core promoters in the Drosophila genome.

Ohler U., Liao G.C., Niemann H., Rubin G.M.

Genome Biol. 3:RESEARCH0087-RESEARCH0087(2002) · Mapped (1)

Assessing the impact of comparative genomic sequence data on the functional annotation of the Drosophila genome.

Bergman C.M., Pfeiffer B.D., Rincon-Limas D.E., Hoskins R.A., Gnirke A., Mungall C.J., Wang A.M., Kronmiller B., Pacleb J.M., Park S. et al.

Genome Biol. 3:RESEARCH0086.1-RESEARCH0086.20(2002) · UniProtKB (31) · Mapped (194)

Heterochromatic sequences in a Drosophila whole-genome shotgun assembly.

Hoskins R.A., Smith C.D., Carlson J.W., Carvalho A.B., Halpern A., Kaminker J.S., Kennedy C., Mungall C.J., Sullivan B.A., Sutton G.G. et al.

Genome Biol. 3:RESEARCH0085.1-RESEARCH0085.16(2002) · UniProtKB (458) · Mapped (24)

The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective.

Kaminker J.S., Bergman C.M., Kronmiller B., Carlson J.W., Svirskas R., Patel S., Frise E., Wheeler D.A., Lewis S.E., Rubin G.M. et al.

Genome Biol. 3:RESEARCH0084.1-RESEARCH0084.20(2002) · UniProtKB (448)

Annotation of the Drosophila melanogaster euchromatic genome: a systematic review.

Misra S., Crosby M.A., Mungall C.J., Matthews B.B., Campbell K.S., Hradecky P., Huang Y., Kaminker J.S., Millburn G.H., Prochnik S.E. et al.

Genome Biol. 3:RESEARCH0083.1-RESEARCH0083.22(2002) · UniProtKB (17,227) · Mapped (30)

A Drosophila full-length cDNA resource.

Stapleton M., Carlson J.W., Brokstein P., Yu C., Champe M., George R.A., Guarin H., Kronmiller B., Pacleb J.M., Park S. et al.

Genome Biol. 3:RESEARCH0080.1-RESEARCH0080.8(2002) · UniProtKB (1,841) · Mapped (7)

Finishing a whole-genome shotgun: release 3 of the Drosophila melanogaster euchromatic genome sequence.

Celniker S.E., Wheeler D.A., Kronmiller B., Carlson J.W., Halpern A., Patel S., Adams M., Champe M., Dugan S.P., Frise E. et al.

Genome Biol. 3:RESEARCH0079-RESEARCH0079(2002) · UniProtKB (432) · Mapped (12)

Drosophila matrix metalloproteinases are required for tissue remodeling, but not embryonic development.

Page-McCaw A., Serano J., Sante J.M., Rubin G.M.

Dev. Cell 4:95-106(2003) · Mapped (9)

Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.

Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D., Collins F.S., Wagner L., Shenmen C.M., Schuler G.D., Altschul S.F. et al.

Proc. Natl. Acad. Sci. U.S.A. 99:16899-16903(2002) · UniProtKB (500) · Mapped (7,218)

Comparative genome and proteome analysis of Anopheles gambiae and Drosophila melanogaster.

Zdobnov E.M., von Mering C., Letunic I., Torrents D., Suyama M., Copley R.R., Christophides G.K., Thomasova D., Holt R.A., Subramanian G.M. et al.

Science 298:149-159(2002) · Mapped (85)

The Drosophila gene collection: identification of putative full-length cDNAs for 70% of D. melanogaster genes.

Stapleton M., Liao G., Brokstein P., Hong L., Carninci P., Shiraki T., Hayashizaki Y., Champe M., Pacleb J., Wan K. et al.

Genome Res. 12:1294-1300(2002) · Mapped (1)

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