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Genome sequencing and analysis of the filamentous fungus Penicillium chrysogenum.

van den Berg M.A., Albang R., Albermann K., Badger J.H., Daran J.-M., Driessen A.J.M., Garcia-Estrada C., Fedorova N.D., Harris D.M., Heijne W.H.M. et al.

Nat. Biotechnol. 26:1161-1168(2008) · UniProtKB (12,773)

Genomic islands in the pathogenic filamentous fungus Aspergillus fumigatus.

Fedorova N.D., Khaldi N., Joardar V.S., Maiti R., Amedeo P., Anderson M.J., Crabtree J., Silva J.C., Badger J.H., Albarraq A. et al.

PLoS Genet. 4:E1000046-E1000046(2008) · UniProtKB (29,446)

Origin and distribution of epipolythiodioxopiperazine (ETP) gene clusters in filamentous ascomycetes.

Patron N.J., Waller R.F., Cozijnsen A.J., Straney D.C., Gardiner D.M., Nierman W.C., Howlett B.J.

BMC Evol. Biol. 7:174-174(2007) · UniProtKB (25)

Type VI secretion is a major virulence determinant in Burkholderia mallei.

Schell M.A., Ulrich R.L., Ribot W.J., Brueggemann E.E., Hines H.B., Chen D., Lipscomb L., Kim H.S., Mrazek J., Nierman W.C. et al.

Mol. Microbiol. 64:1466-1485(2007) · UniProtKB (26)

Sequence and annotation of the 369-kb NY-2A and the 345-kb AR158 viruses that infect Chlorella NC64A.

Fitzgerald L.A., Graves M.V., Li X., Feldblyum T., Nierman W.C., Van Etten J.L.

Virology 358:472-484(2007) · UniProtKB (1,687)

Evolution of sensory complexity recorded in a myxobacterial genome.

Goldman B.S., Nierman W.C., Kaiser D., Slater S.C., Durkin A.S., Eisen J., Ronning C.M., Barbazuk W.B., Blanchard M., Field C. et al.

Proc. Natl. Acad. Sci. U.S.A. 103:15200-15205(2006) · UniProtKB (7,314)

Genome sequencing and analysis of Aspergillus oryzae.

Machida M., Asai K., Sano M., Tanaka T., Kumagai T., Terai G., Kusumoto K., Arima T., Akita O., Kashiwagi Y. et al.

Nature 438:1157-1161(2005) · UniProtKB (12,055)

Genomic sequence of the pathogenic and allergenic filamentous fungus Aspergillus fumigatus.

Nierman W.C., Pain A., Anderson M.J., Wortman J.R., Kim H.S., Arroyo J., Berriman M., Abe K., Archer D.B., Bermejo C. et al.

Nature 438:1151-1156(2005) · UniProtKB (9,629)

Sequencing of Aspergillus nidulans and comparative analysis with A. fumigatus and A. oryzae.

Galagan J.E., Calvo S.E., Cuomo C., Ma L.-J., Wortman J.R., Batzoglou S., Lee S.-I., Bastuerkmen M., Spevak C.C., Clutterbuck J. et al.

Nature 438:1105-1115(2005) · UniProtKB (9,538)

Genome sequence of Theileria parva, a bovine pathogen that transforms lymphocytes.

Gardner M.J., Bishop R., Shah T., de Villiers E.P., Carlton J.M., Hall N., Ren Q., Paulsen I.T., Pain A., Berriman M. et al.

Science 309:134-137(2005) · UniProtKB (4,068)

Transcriptional divergence of the duplicated oxidative stress-responsive genes in the Arabidopsis genome.

Stanley Kim H., Yu Y., Snesrud E.C., Moy L.P., Linford L.D., Haas B.J., Nierman W.C., Quackenbush J.

Plant J. 41:212-220(2005) · Mapped (150)

Structural flexibility in the Burkholderia mallei genome.

Nierman W.C., DeShazer D., Kim H.S., Tettelin H., Nelson K.E., Feldblyum T.V., Ulrich R.L., Ronning C.M., Brinkac L.M., Daugherty S.C. et al.

Proc. Natl. Acad. Sci. U.S.A. 101:14246-14251(2004) · UniProtKB (4,797)

Whole genome comparisons of serotype 4b and 1/2a strains of the food-borne pathogen Listeria monocytogenes reveal new insights into the core genome components of this species.

Nelson K.E., Fouts D.E., Mongodin E.F., Ravel J., DeBoy R.T., Kolonay J.F., Rasko D.A., Angiuoli S.V., Gill S.R., Paulsen I.T. et al.

Nucleic Acids Res. 32:2386-2395(2004) · UniProtKB (8,897)

Genome sequence of the Brown Norway rat yields insights into mammalian evolution.

Gibbs R.A., Weinstock G.M., Metzker M.L., Muzny D.M., Sodergren E.J., Scherer S., Scott G., Steffen D., Worley K.C., Burch P.E. et al.

Nature 428:493-521(2004) · UniProtKB (351) · Mapped (82)

Phylogenomics of the reproductive parasite Wolbachia pipientis wMel: a streamlined genome overrun by mobile genetic elements.

Wu M., Sun L.V., Vamathevan J.J., Riegler M., DeBoy R.T., Brownlie J.C., McGraw E.A., Martin W., Esser C., Ahmadinejad N. et al.

PLoS Biol. 2:327-341(2004) · UniProtKB (1,161)

The genome sequence of Bacillus anthracis Ames and comparison to closely related bacteria.

Read T.D., Peterson S.N., Tourasse N.J., Baillie L.W., Paulsen I.T., Nelson K.E., Tettelin H., Fouts D.E., Eisen J.A., Gill S.R. et al.

Nature 423:81-86(2003) · UniProtKB (5,313)

Cloning and characterization of a gene cluster for geldanamycin production in Streptomyces hygroscopicus NRRL 3602.

Rascher A., Hu Z., Viswanathan N., Schirmer A., Reid R., Nierman W.C., Lewis M., Hutchinson C.R.

FEMS Microbiol. Lett. 218:223-230(2003) · UniProtKB (23)

The complete genome sequence of Chlorobium tepidum TLS, a photosynthetic, anaerobic, green-sulfur bacterium.

Eisen J.A., Nelson K.E., Paulsen I.T., Heidelberg J.F., Wu M., Dodson R.J., DeBoy R.T., Gwinn M.L., Nelson W.C., Haft D.H. et al.

Proc. Natl. Acad. Sci. U.S.A. 99:9509-9514(2002) · UniProtKB (2,250)

Complete genome sequence of Caulobacter crescentus.

Nierman W.C., Feldblyum T.V., Laub M.T., Paulsen I.T., Nelson K.E., Eisen J.A., Heidelberg J.F., Alley M.R.K., Ohta N., Maddock J.R. et al.

Proc. Natl. Acad. Sci. U.S.A. 98:4136-4141(2001) · UniProtKB (3,718)

Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana.

Salanoubat M., Lemcke K., Rieger M., Ansorge W., Unseld M., Fartmann B., Valle G., Bloecker H., Perez-Alonso M., Obermaier B. et al.

Nature 408:820-822(2000) · UniProtKB (5,352)

Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.

Theologis A., Ecker J.R., Palm C.J., Federspiel N.A., Kaul S., White O., Alonso J., Altafi H., Araujo R., Bowman C.L. et al.

Nature 408:816-820(2000) · UniProtKB (7,856)

DNA sequence of both chromosomes of the cholera pathogen Vibrio cholerae.

Heidelberg J.F., Eisen J.A., Nelson W.C., Clayton R.A., Gwinn M.L., Dodson R.J., Haft D.H., Hickey E.K., Peterson J.D., Umayam L.A. et al.

Nature 406:477-483(2000) · UniProtKB (3,784)

Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana.

Lin X., Kaul S., Rounsley S.D., Shea T.P., Benito M.-I., Town C.D., Fujii C.Y., Mason T.M., Bowman C.L., Barnstead M.E. et al.

Nature 402:761-768(1999) · UniProtKB (4,824)

The human proteinase-activated receptor-3 (PAR-3) gene. Identification within a PAR gene cluster and characterization in vascular endothelial cells and platelets.

Schmidt V.A., Nierman W.C., Maglott D.R., Cupit L.D., Moskowitz K.A., Wainer J.A., Bahou W.F.

J. Biol. Chem. 273:15061-15068(1998) · UniProtKB (1)

Chromosome assignment of human brain expressed sequence tags (ESTs) by analyzing fluorescently labeled PCR products from hybrid cell panels.

Durkin A.S., Nierman W.C., Zoghbi H., Jones C., Kozak C.A., Maglott D.R.

Cytogenet. Cell Genet. 65:86-91(1994) · Mapped (8)

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