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Three genomes from the phylum Acidobacteria provide insight into the lifestyles of these microorganisms in soils.

Ward N.L., Challacombe J.F., Janssen P.H., Henrissat B., Coutinho P.M., Wu M., Xie G., Haft D.H., Sait M., Badger J. et al.

Appl. Environ. Microbiol. 75:2046-2056(2009) · UniProtKB (15,895)

Acute/recent HCV infection. Clinical course, viral replication kunetic and disease outcome.

Tsertsvadze T., Sharvadze L., Dzigua L., Dolmazashvili E., Nelson K.E.

Georgian Med News 2008:43-49(2008) · Mapped (885)

Distribution of HIV-1 resistant polymorphisms among HIV infected patients in Georgia.

Karchava M., Nelson K.E., Gochitashvili N., Dvali N., Tsertsvadze T.

Georgian Med News 2008:28-33(2008) · Mapped (33)

Regulation of the xylan-degrading apparatus of Cellvibrio japonicus by a novel two-component system.

Emami K., Topakas E., Nagy T., Henshaw J., Jackson K.A., Nelson K.E., Mongodin E.F., Murray J.W., Lewis R.J., Gilbert H.J.

J. Biol. Chem. 284:1086-1096(2009) · Mapped (1)

Insights into plant cell wall degradation from the genome sequence of the soil bacterium Cellvibrio japonicus.

DeBoy R.T., Mongodin E.F., Fouts D.E., Tailford L.E., Khouri H., Emerson J.B., Mohamoud Y., Watkins K., Henrissat B., Gilbert H.J. et al.

J. Bacteriol. 190:5455-5463(2008) · UniProtKB (3,712)

Occult hepatitis C virus infection during an outbreak in a hemodialysis unit in Thailand.

Thongsawat S., Maneekarn N., Kuniholm M.H., Pantip C., Thungsuputi A., Lumlertkul D., Bannachak D., Nelson K.E.

J. Med. Virol. 80:808-815(2008) · UniProtKB (32)

Population diversity and dynamics of Streptococcus mitis, Streptococcus oralis, and Streptococcus infantis in the upper respiratory tracts of adults, determined by a nonculture strategy.

Bek-Thomsen M., Tettelin H., Hance I., Nelson K.E., Kilian M.

Infect. Immun. 76:1889-1896(2008) · UniProtKB (52)

HIV-1 genetic diversity and compartmentalization in mother/infant pairs infected with CRF01_AE.

Tovanabutra S., de Souza M., Sittisombut N., Sriplienchan S., Ketsararat V., Birx D.L., Khamboonrueng C., Nelson K.E., McCutchan F.E., Robb M.L.

AIDS 21:1050-1053(2007) · UniProtKB (290)

Complete genomes for hepatitis C virus subtypes 6f, 6i, 6j and 6m: viral genetic diversity among Thai blood donors and infected spouses.

Lu L., Li C., Fu Y., Thaikruea L., Thongswat S., Maneekarn N., Apichartpiyakul C., Hotta H., Okamoto H., Netski D. et al.

J. Gen. Virol. 88:1505-1518(2007) · UniProtKB (11)

Secrets of soil survival revealed by the genome sequence of Arthrobacter aurescens TC1.

Mongodin E.F., Shapir N., Daugherty S.C., DeBoy R.T., Emerson J.B., Shvartzbeyn A., Radune D., Vamathevan J., Riggs F., Grinberg V. et al.

PLoS Genet. 2:2094-2106(2006) · UniProtKB (4,564)

Distinguishing molecular forms of HIV-1 in Asia with a high-throughput, fluorescent genotyping assay, MHAbce v.2.

Kijak G.H., Tovanabutra S., Sanders-Buell E., Watanaveeradej V., de Souza M.S., Nelson K.E., Ketsararat V., Gulgolgarn V., Wera-arpachai M., Sriplienchan S. et al.

Virology 358:178-191(2007) · UniProtKB (107)

Comparative genomic evidence for a close relationship between the dimorphic prosthecate bacteria Hyphomonas neptunium and Caulobacter crescentus.

Badger J.H., Hoover T.R., Brun Y.V., Weiner R.M., Laub M.T., Alexandre G., Mrazek J., Ren Q., Paulsen I.T., Nelson K.E. et al.

J. Bacteriol. 188:6841-6850(2006) · UniProtKB (3,499)

The genome of Salinibacter ruber: convergence and gene exchange among hyperhalophilic bacteria and archaea.

Mongodin E.F., Nelson K.E., Daugherty S., DeBoy R.T., Wister J., Khouri H., Weidman J., Walsh D.A., Papke R.T., Sanchez Perez G. et al.

Proc. Natl. Acad. Sci. U.S.A. 102:18147-18152(2005) · UniProtKB (2,812)

The psychrophilic lifestyle as revealed by the genome sequence of Colwellia psychrerythraea 34H through genomic and proteomic analyses.

Methe B.A., Nelson K.E., Deming J.W., Momen B., Melamud E., Zhang X., Moult J., Madupu R., Nelson W.C., Dodson R.J. et al.

Proc. Natl. Acad. Sci. U.S.A. 102:10913-10918(2005) · UniProtKB (4,872)

Gene transfer and genome plasticity in Thermotoga maritima, a model hyperthermophilic species.

Mongodin E.F., Hance I.R., Deboy R.T., Gill S.R., Daugherty S., Huber R., Fraser C.M., Stetter K., Nelson K.E.

J. Bacteriol. 187:4935-4944(2005) · UniProtKB (49)

Insights on evolution of virulence and resistance from the complete genome analysis of an early methicillin-resistant Staphylococcus aureus strain and a biofilm-producing methicillin-resistant Staphylococcus epidermidis strain.

Gill S.R., Fouts D.E., Archer G.L., Mongodin E.F., DeBoy R.T., Ravel J., Paulsen I.T., Kolonay J.F., Brinkac L.M., Beanan M.J. et al.

J. Bacteriol. 187:2426-2438(2005) · UniProtKB (5,172)

Major structural differences and novel potential virulence mechanisms from the genomes of multiple Campylobacter species.

Fouts D.E., Mongodin E.F., Mandrell R.E., Miller W.G., Rasko D.A., Ravel J., Brinkac L.M., DeBoy R.T., Parker C.T., Daugherty S.C. et al.

PLoS Biol. 3:72-85(2005) · UniProtKB (1,836)

Genome sequence of the PCE-dechlorinating bacterium Dehalococcoides ethenogenes.

Seshadri R., Adrian L., Fouts D.E., Eisen J.A., Phillippy A.M., Methe B.A., Ward N.L., Nelson W.C., DeBoy R.T., Khouri H.M. et al.

Science 307:105-108(2005) · UniProtKB (1,502)

Genomic insights into methanotrophy: the complete genome sequence of Methylococcus capsulatus (Bath).

Ward N.L., Larsen O., Sakwa J., Bruseth L., Khouri H.M., Durkin A.S., Dimitrov G., Jiang L., Scanlan D., Kang K.H. et al.

PLoS Biol. 2:1616-1628(2004) · UniProtKB (2,925)

Structural flexibility in the Burkholderia mallei genome.

Nierman W.C., DeShazer D., Kim H.S., Tettelin H., Nelson K.E., Feldblyum T.V., Ulrich R.L., Ronning C.M., Brinkac L.M., Daugherty S.C. et al.

Proc. Natl. Acad. Sci. U.S.A. 101:14246-14251(2004) · UniProtKB (4,797)

A novel family of carbohydrate-binding modules identified with Ruminococcus albus proteins.

Xu Q., Morrison M., Nelson K.E., Bayer E.A., Atamna N., Lamed R.

FEBS Lett. 566:11-16(2004) · UniProtKB (3)

Whole genome comparisons of serotype 4b and 1/2a strains of the food-borne pathogen Listeria monocytogenes reveal new insights into the core genome components of this species.

Nelson K.E., Fouts D.E., Mongodin E.F., Ravel J., DeBoy R.T., Kolonay J.F., Rasko D.A., Angiuoli S.V., Gill S.R., Paulsen I.T. et al.

Nucleic Acids Res. 32:2386-2395(2004) · UniProtKB (8,897)

Phylogenomics of the reproductive parasite Wolbachia pipientis wMel: a streamlined genome overrun by mobile genetic elements.

Wu M., Sun L.V., Vamathevan J.J., Riegler M., DeBoy R.T., Brownlie J.C., McGraw E.A., Martin W., Esser C., Ahmadinejad N. et al.

PLoS Biol. 2:327-341(2004) · UniProtKB (1,161)

Ruminococcus albus 8 mutants defective in cellulose degradation are deficient in two processive endocellulases, Cel48A and Cel9B, both of which possess a novel modular architecture.

Devillard E., Goodheart D.B., Karnati S.K., Bayer E.A., Lamed R., Miron J., Nelson K.E., Morrison M.

J. Bacteriol. 186:136-145(2004) · UniProtKB (2)

Genome of Geobacter sulfurreducens: metal reduction in subsurface environments.

Methe B.A., Nelson K.E., Eisen J.A., Paulsen I.T., Nelson W.C., Heidelberg J.F., Wu D., Wu M., Ward N.L., Beanan M.J. et al.

Science 302:1967-1969(2003) · UniProtKB (3,415)

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