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Photosystem I gene cassettes are present in marine virus genomes.

Sharon I., Alperovitch A., Rohwer F., Haynes M., Glaser F., Atamna-Ismaeel N., Pinter R.Y., Partensky F., Koonin E.V., Wolf Y.I. et al.

Nature 461:258-262(2009) · UniProtKB (8)

Molecular characterization of the plant virus genus Ourmiavirus and evidence of inter-kingdom reassortment of viral genome segments as its possible route of origin.

Rastgou M., Habibi M.K., Izadpanah K., Masenga V., Milne R.G., Wolf Y.I., Koonin E.V., Turina M.

J. Gen. Virol. 90:2525-2535(2009) · UniProtKB (9)

Conformational flexibility and molecular interactions of an archaeal homologue of the Shwachman-Bodian-Diamond syndrome protein.

Ng C.L., Waterman D.G., Koonin E.V., Walters A.D., Chong J.P., Isupov M.N., Lebedev A.A., Bunka D.H., Stockley P.G., Ortiz-Lombardia M. et al.

BMC Struct. Biol. 9:32-32(2009) · Mapped (1)

Encapsulated in silica: genome, proteome and physiology of the thermophilic bacterium Anoxybacillus flavithermus WK1.

Saw J.H., Mountain B.W., Feng L., Omelchenko M.V., Hou S., Saito J.A., Stott M.B., Li D., Zhao G., Wu J. et al.

Genome Biol. 9:R161.1-R161.16(2008) · UniProtKB (2,819)

A genomic analysis of the archaeal system Ignicoccus hospitalis-Nanoarchaeum equitans.

Podar M., Anderson I., Makarova K.S., Elkins J.G., Ivanova N., Wall M.A., Lykidis A., Mavromatis K., Sun H., Hudson M.E. et al.

Genome Biol. 9:R158.1-R158.18(2008) · UniProtKB (121)

X-ray structure of the complex of regulatory subunits of human DNA polymerase delta.

Baranovskiy A.G., Babayeva N.D., Liston V.G., Rogozin I.B., Koonin E.V., Pavlov Y.I., Vassylyev D.G., Tahirov T.H.

Cell Cycle 7:3026-3036(2008) · Mapped (15)

Complete genome sequence of the extremely acidophilic methanotroph isolate V4, Methylacidiphilum infernorum, a representative of the bacterial phylum Verrucomicrobia.

Hou S., Makarova K.S., Saw J.H., Senin P., Ly B.V., Zhou Z., Ren Y., Wang J., Galperin M.Y., Omelchenko M.V. et al.

Biol. Direct 3:26-26(2008) · UniProtKB (2,470)

A korarchaeal genome reveals new insights into the evolution of the Archaea.

Elkins J.G., Podar M., Graham D.E., Makarova K.S., Wolf Y., Randau L., Hedlund B.P., Brochier-Armanet C., Kunin V., Anderson I. et al.

Proc. Natl. Acad. Sci. U.S.A. 105:8102-8107(2008) · UniProtKB (1,602)

A novel family of sequence-specific endoribonucleases associated with the clustered regularly interspaced short palindromic repeats.

Beloglazova N., Brown G., Zimmerman M.D., Proudfoot M., Makarova K.S., Kudritska M., Kochinyan S., Wang S., Chruszcz M., Minor W. et al.

J. Biol. Chem. 283:20361-20371(2008) · Mapped (1)

Comparative analysis of in vivo interactions between Rev1 protein and other Y-family DNA polymerases in animals and yeasts.

Kosarek J.N., Woodruff R.V., Rivera-Begeman A., Guo C., D'Souza S., Koonin E.V., Walker G.C., Friedberg E.C.

DNA Repair (Amst.) 7:439-451(2008) · Mapped (3)

Myosin XI-K Is required for rapid trafficking of Golgi stacks, peroxisomes, and mitochondria in leaf cells of Nicotiana benthamiana.

Avisar D., Prokhnevsky A.I., Makarova K.S., Koonin E.V., Dolja V.V.

Plant Physiol. 146:1098-1108(2008) · UniProtKB (6)

Comparative genomics of the lactic acid bacteria.

Makarova K.S., Slesarev A., Wolf Y.I., Sorokin A., Mirkin B., Koonin E.V., Pavlov A., Pavlova N., Karamychev V., Polouchine N. et al.

Proc. Natl. Acad. Sci. U.S.A. 103:15611-15616(2006) · UniProtKB (17,870)

The cyanobacterial genome core and the origin of photosynthesis.

Mulkidjanian A.Y., Koonin E.V., Makarova K.S., Mekhedov S.L., Sorokin A., Wolf Y.I., Dufresne A., Partensky F., Burd H., Kaznadzey D. et al.

Proc. Natl. Acad. Sci. U.S.A. 103:13126-13131(2006) · UniProtKB (88)

Crystal structure of Bacillus anthracis ThiI, a tRNA-modifying enzyme containing the predicted RNA-binding THUMP domain.

Waterman D.G., Ortiz-Lombardia M., Fogg M.J., Koonin E.V., Antson A.A.

J. Mol. Biol. 356:97-110(2006) · Mapped (1)

APOBEC4, a new member of the AID/APOBEC family of polynucleotide (deoxy)cytidine deaminases predicted by computational analysis.

Rogozin I.B., Basu M.K., Jordan I.K., Pavlov Y.I., Koonin E.V.

Cell Cycle 4:1281-1285(2005) · UniProtKB (2)

Transcription of mammalian messenger RNAs by a nuclear RNA polymerase of mitochondrial origin.

Kravchenko J.E., Rogozin I.B., Koonin E.V., Chumakov P.M.

Nature 436:735-739(2005) · Mapped (4)

Crystal structure of Mil (Mth680): internal duplication and similarity between the Imp4/Brix domain and the anticodon-binding domain of class IIa aminoacyl-tRNA synthetases.

Ng C.L., Waterman D., Koonin E.V., Antson A.A., Ortiz-Lombardia M.

EMBO Rep. 6:140-146(2005) · Mapped (1)

Genome sequence of the deep-sea gamma-proteobacterium Idiomarina loihiensis reveals amino acid fermentation as a source of carbon and energy.

Hou S., Saw J.H., Lee K.S., Freitas T.A., Belisle C., Kawarabayasi Y., Donachie S.P., Pikina A., Galperin M.Y., Koonin E.V. et al.

Proc. Natl. Acad. Sci. U.S.A. 101:18036-18041(2004) · UniProtKB (2,608)

De-ubiquitination and ubiquitin ligase domains of A20 downregulate NF-kappaB signalling.

Wertz I.E., O'Rourke K.M., Zhou H., Eby M., Aravind L., Seshagiri S., Wu P., Wiesmann C., Baker R., Boone D.L. et al.

Nature 430:694-699(2004) · UniProtKB (2) · Mapped (4)

Evolution of cell-cell signaling in animals: did late horizontal gene transfer from bacteria have a role?

Iyer L.M., Aravind L., Coon S.L., Klein D.C., Koonin E.V.

Trends Genet. 20:292-299(2004) · Mapped (1)

Regeneration of peroxiredoxins by p53-regulated sestrins, homologs of bacterial AhpD.

Budanov A.V., Sablina A.A., Feinstein E., Koonin E.V., Chumakov P.M.

Science 304:596-600(2004) · UniProtKB (2) · Mapped (7)

The SPANX gene family of cancer/testis-specific antigens: rapid evolution and amplification in African great apes and hominids.

Kouprina N., Mullokandov M., Rogozin I.B., Collins N.K., Solomon G., Otstot J., Risinger J.I., Koonin E.V., Barrett J.C., Larionov V.

Proc. Natl. Acad. Sci. U.S.A. 101:3077-3082(2004) · UniProtKB (10)

Self-regulated cleavage of the mitochondrial intramembrane-cleaving protease PARL yields Pbeta, a nuclear-targeted peptide.

Sik A., Passer B.J., Koonin E.V., Pellegrini L.

J. Biol. Chem. 279:15323-15329(2004) · UniProtKB (1)

Evolution and classification of P-loop kinases and related proteins.

Leipe D.D., Koonin E.V., Aravind L.

J. Mol. Biol. 333:781-815(2003) · Mapped (2)

Genome sequence of the cyanobacterium Prochlorococcus marinus SS120, a nearly minimal oxyphototrophic genome.

Dufresne A., Salanoubat M., Partensky F., Artiguenave F., Axmann I.M., Barbe V., Duprat S., Galperin M.Y., Koonin E.V., Le Gall F. et al.

Proc. Natl. Acad. Sci. U.S.A. 100:10020-10025(2003) · UniProtKB (1,881)

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