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The genome of Nectria haematococca: contribution of supernumerary chromosomes to gene expansion.

Coleman J.J., Rounsley S.D., Rodriguez-Carres M., Kuo A., Wasmann C.C., Grimwood J., Schmutz J., Taga M., White G.J., Zhou S. et al.

PLoS Genet. 5:E1000618-E1000618(2009) · UniProtKB (15,679)

Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas.

Worden A.Z., Lee J.H., Mock T., Rouze P., Simmons M.P., Aerts A.L., Allen A.E., Cuvelier M.L., Derelle E., Everett M.V. et al.

Science 324:268-272(2009) · UniProtKB (20,253)

Mammalian end binding proteins control persistent microtubule growth.

Komarova Y., De Groot C.O., Grigoriev I., Gouveia S.M., Munteanu E.L., Schober J.M., Honnappa S., Buey R.M., Hoogenraad C.C., Dogterom M. et al.

J. Cell Biol. 184:691-706(2009) · Mapped (6)

Genome, transcriptome, and secretome analysis of wood decay fungus Postia placenta supports unique mechanisms of lignocellulose conversion.

Martinez D., Challacombe J., Morgenstern I., Hibbett D., Schmoll M., Kubicek C.P., Ferreira P., Ruiz-Duenas F.J., Martinez A.T., Kersten P. et al.

Proc. Natl. Acad. Sci. U.S.A. 106:1954-1959(2009) · UniProtKB (8,983)

The Sorghum bicolor genome and the diversification of grasses.

Paterson A.H., Bowers J.E., Bruggmann R., Dubchak I., Grimwood J., Gundlach H., Haberer G., Hellsten U., Mitros T., Poliakov A. et al.

Nature 457:551-556(2009) · UniProtKB (32,718)

The Phaeodactylum genome reveals the evolutionary history of diatom genomes.

Bowler C., Allen A.E., Badger J.H., Grimwood J., Jabbari K., Kuo A., Maheswari U., Martens C., Maumus F., Otillar R.P. et al.

Nature 456:239-244(2008) · UniProtKB (21,948)

The Trichoplax genome and the nature of placozoans.

Srivastava M., Begovic E., Chapman J., Putnam N.H., Hellsten U., Kawashima T., Kuo A., Mitros T., Salamov A., Carpenter M.L. et al.

Nature 454:955-960(2008) · UniProtKB (11,503)

The amphioxus genome and the evolution of the chordate karyotype.

Putnam N.H., Butts T., Ferrier D.E.K., Furlong R.F., Hellsten U., Kawashima T., Robinson-Rechavi M., Shoguchi E., Terry A., Yu J.-K. et al.

Nature 453:1064-1071(2008) · UniProtKB (28,535)

The genome of Laccaria bicolor provides insights into mycorrhizal symbiosis.

Martin F., Aerts A., Ahren D., Brun A., Danchin E.G.J., Duchaussoy F., Gibon J., Kohler A., Lindquist E., Pereda V. et al.

Nature 452:88-92(2008) · UniProtKB (17,895)

The genome of the choanoflagellate Monosiga brevicollis and the origin of metazoans.

JGI Sequencing

Nature 451:783-788(2008) · UniProtKB (9,156)

STIM1 is a MT-plus-end-tracking protein involved in remodeling of the ER.

Grigoriev I., Gouveia S.M., van der Vaart B., Demmers J., Smyth J.T., Honnappa S., Splinter D., Steinmetz M.O., Putney J.W. Jr., Hoogenraad C.C. et al.

Curr. Biol. 18:177-182(2008) · Mapped (1)

The physcomitrella genome reveals evolutionary insights into the conquest of land by plants.

Rensing S.A., Lang D., Zimmer A.D., Terry A., Salamov A., Shapiro H., Nishiyama T., Perroud P.-F., Lindquist E.A., Kamisugi Y. et al.

Science 319:64-69(2008) · UniProtKB (34,711)

The Chlamydomonas genome reveals the evolution of key animal and plant functions.

Merchant S.S., Prochnik S.E., Vallon O., Harris E.H., Karpowicz S.J., Witman G.B., Terry A., Salamov A., Fritz-Laylin L.K., Marechal-Drouard L. et al.

Science 318:245-250(2007) · UniProtKB (14,261) · Mapped (67)

Rab6 regulates transport and targeting of exocytotic carriers.

Grigoriev I., Splinter D., Keijzer N., Wulf P.S., Demmers J., Ohtsuka T., Modesti M., Maly I.V., Grosveld F., Hoogenraad C.C. et al.

Dev. Cell 13:305-314(2007) · Mapped (8)

Sea anemone genome reveals ancestral eumetazoan gene repertoire and genomic organization.

Putnam N.H., Srivastava M., Hellsten U., Dirks B., Chapman J., Salamov A., Terry A., Shapiro H., Lindquist E., Kapitonov V.V. et al.

Science 317:86-94(2007) · UniProtKB (24,430)

The tiny eukaryote Ostreococcus provides genomic insights into the paradox of plankton speciation.

Palenik B., Grimwood J., Aerts A., Rouze P., Salamov A., Putnam N., Dupont C., Jorgensen R., Derelle E., Rombauts S. et al.

Proc. Natl. Acad. Sci. U.S.A. 104:7705-7710(2007) · UniProtKB (7,403)

Genome sequence of the lignocellulose-bioconverting and xylose-fermenting yeast Pichia stipitis.

Jeffries T.W., Grigoriev I.V., Grimwood J., Laplaza J.M., Aerts A., Salamov A., Schmutz J., Lindquist E., Dehal P., Shapiro H. et al.

Nat. Biotechnol. 25:319-326(2007) · UniProtKB (5,796)

Comparative genomics of the lactic acid bacteria.

Makarova K.S., Slesarev A., Wolf Y.I., Sorokin A., Mirkin B., Koonin E.V., Pavlov A., Pavlova N., Karamychev V., Polouchine N. et al.

Proc. Natl. Acad. Sci. U.S.A. 103:15611-15616(2006) · UniProtKB (17,870)

The genome of black cottonwood, Populus trichocarpa (Torr. & Gray).

Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A. et al.

Science 313:1596-1604(2006) · UniProtKB (41,795)

Mammalian CLASPs are required for mitotic spindle organization and kinetochore alignment.

Mimori-Kiyosue Y., Grigoriev I., Sasaki H., Matsui C., Akhmanova A., Tsukita S., Vorobjev I.

Genes Cells 11:845-857(2006) · UniProtKB (2) · Mapped (20)

CLASPs attach microtubule plus ends to the cell cortex through a complex with LL5beta.

Lansbergen G., Grigoriev I., Mimori-Kiyosue Y., Ohtsuka T., Higa S., Kitajima I., Demmers J., Galjart N., Houtsmuller A.B., Grosveld F. et al.

Dev. Cell 11:21-32(2006) · UniProtKB (2) · Mapped (10)

Computational analysis of the Phanerochaete chrysosporium v2.0 genome database and mass spectrometry identification of peptides in ligninolytic cultures reveal complex mixtures of secreted proteins.

Vanden Wymelenberg A., Minges P., Sabat G., Martinez D., Aerts A., Salamov A., Grigoriev I., Shapiro H., Putnam N., Belinky P. et al.

Fungal Genet. Biol. 43:343-356(2006) · UniProtKB (3)

Regulation of microtubule dynamics in 3T3 fibroblasts by Rho family GTPases.

Grigoriev I., Borisy G., Vorobjev I.

Cell Motil. Cytoskeleton 63:29-40(2006) · Mapped (11)

CLASP1 and CLASP2 bind to EB1 and regulate microtubule plus-end dynamics at the cell cortex.

Mimori-Kiyosue Y., Grigoriev I., Lansbergen G., Sasaki H., Matsui C., Severin F., Galjart N., Grosveld F., Vorobjev I., Tsukita S. et al.

J. Cell Biol. 168:141-153(2005) · UniProtKB (3) · Mapped (20)

The sequence and analysis of duplication-rich human chromosome 16.

Martin J., Han C., Gordon L.A., Terry A., Prabhakar S., She X., Xie G., Hellsten U., Chan Y.M., Altherr M. et al.

Nature 432:988-994(2004) · UniProtKB (638)

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