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Rapid evolution of virulence and drug resistance in the emerging zoonotic pathogen Streptococcus suis.

Holden M.T.G., Hauser H., Sanders M., Ngo T.H., Cherevach I., Cronin A., Goodhead I., Mungall K., Quail M.A., Price C. et al.

PLoS ONE 4:E6072-E6072(2009) · UniProtKB (5,623)

Evidence for niche adaptation in the genome of the bovine pathogen Streptococcus uberis.

Ward P.N., Holden M.T.G., Leigh J.A., Lennard N., Bignell A., Barron A., Clark L., Quail M.A., Woodward J., Barrell B.G. et al.

BMC Genomics 10:54-54(2009) · UniProtKB (1,760)

The genome of the simian and human malaria parasite Plasmodium knowlesi.

Pain A., Boehme U., Berry A.E., Mungall K., Finn R.D., Jackson A.P., Mourier T., Mistry J., Pasini E.M., Aslett M.A. et al.

Nature 455:799-803(2008) · UniProtKB (4)

Genome plasticity of BCG and impact on vaccine efficacy.

Brosch R., Gordon S.V., Garnier T., Eiglmeier K., Frigui W., Valenti P., Dos Santos S., Duthoy S., Lacroix C., Garcia-Pelayo C. et al.

Proc. Natl. Acad. Sci. U.S.A. 104:5596-5601(2007) · UniProtKB (3,891)

Meningococcal genetic variation mechanisms viewed through comparative analysis of serogroup C strain FAM18.

Bentley S.D., Vernikos G.S., Snyder L.A.S., Churcher C., Arrowsmith C., Chillingworth T., Cronin A., Davis P.H., Holroyd N.E., Jagels K. et al.

PLoS Genet. 3:230-240(2007) · UniProtKB (1,865)

Complete genome of acute rheumatic fever-associated serotype M5 Streptococcus pyogenes strain Manfredo.

Holden M.T.G., Scott A., Cherevach I., Chillingworth T., Churcher C., Cronin A., Dowd L., Feltwell T., Hamlin N., Holroyd S. et al.

J. Bacteriol. 189:1473-1477(2007) · UniProtKB (1,736)

Genomic sequence of the pathogenic and allergenic filamentous fungus Aspergillus fumigatus.

Nierman W.C., Pain A., Anderson M.J., Wortman J.R., Kim H.S., Arroyo J., Berriman M., Abe K., Archer D.B., Bermejo C. et al.

Nature 438:1151-1156(2005) · UniProtKB (9,629)

Complete genome sequence and lytic phase transcription profile of a Coccolithovirus.

Wilson W.H., Schroeder D.C., Allen M.J., Holden M.T., Parkhill J., Barrell B.G., Churcher C., Hamlin N., Mungall K., Norbertczak H. et al.

Science 309:1090-1092(2005) · UniProtKB (472)

The genome of the kinetoplastid parasite, Leishmania major.

Ivens A.C., Peacock C.S., Worthey E.A., Murphy L., Aggarwal G., Berriman M., Sisk E., Rajandream M.A., Adlem E., Aert R. et al.

Science 309:436-442(2005) · UniProtKB (7,938)

The genome of the African trypanosome Trypanosoma brucei.

Berriman M., Ghedin E., Hertz-Fowler C., Blandin G., Renauld H., Bartholomeu D.C., Lennard N.J., Caler E., Hamlin N.E., Haas B. et al.

Science 309:416-422(2005) · UniProtKB (4,402)

Genome of the host-cell transforming parasite Theileria annulata compared with T. parva.

Pain A., Renauld H., Berriman M., Murphy L., Yeats C.A., Weir W., Kerhornou A., Aslett M., Bishop R., Bouchier C. et al.

Science 309:131-133(2005) · UniProtKB (3,790)

Gene arrays at Pneumocystis carinii telomeres.

Keely S.P., Renauld H., Wakefield A.E., Cushion M.T., Smulian A.G., Fosker N., Fraser A., Harris D., Murphy L., Price C. et al.

Genetics 170:1589-1600(2005) · UniProtKB (17)

The genome of the social amoeba Dictyostelium discoideum.

Eichinger L., Pachebat J.A., Gloeckner G., Rajandream M.A., Sucgang R., Berriman M., Song J., Olsen R., Szafranski K., Xu Q. et al.

Nature 435:43-57(2005) · UniProtKB (12,911)

The Chlamydophila abortus genome sequence reveals an array of variable proteins that contribute to interspecies variation.

Thomson N.R., Yeats C., Bell K., Holden M.T.G., Bentley S.D., Livingstone M., Cerdeno-Tarraga A.-M., Harris B., Doggett J., Ormond D. et al.

Genome Res. 15:629-640(2005) · UniProtKB (932)

Extensive DNA inversions in the B. fragilis genome control variable gene expression.

Cerdeno-Tarraga A.-M., Patrick S., Crossman L.C., Blakely G., Abratt V., Lennard N., Poxton I., Duerden B., Harris B., Quail M.A. et al.

Science 307:1463-1465(2005) · UniProtKB (4,234)

The genome of the protist parasite Entamoeba histolytica.

Loftus B.J., Anderson I., Davies R., Alsmark U.C., Samuelson J., Amedeo P., Roncaglia P., Berriman M., Hirt R.P., Mann B.J. et al.

Nature 433:865-868(2005) · UniProtKB (7,957)

A comprehensive survey of the Plasmodium life cycle by genomic, transcriptomic, and proteomic analyses.

Hall N., Karras M., Raine J.D., Carlton J.M., Kooij T.W.A., Berriman M., Florens L., Janssen C.S., Pain A., Christophides G.K. et al.

Science 307:82-86(2005) · UniProtKB (26,271)

Genomic plasticity of the causative agent of melioidosis, Burkholderia pseudomallei.

Holden M.T.G., Titball R.W., Peacock S.J., Cerdeno-Tarraga A.-M., Atkins T., Crossman L.C., Pitt T., Churcher C., Mungall K.L., Bentley S.D. et al.

Proc. Natl. Acad. Sci. U.S.A. 101:14240-14245(2004) · UniProtKB (5,717)

Complete genomes of two clinical Staphylococcus aureus strains: evidence for the rapid evolution of virulence and drug resistance.

Holden M.T.G., Feil E.J., Lindsay J.A., Peacock S.J., Day N.P.J., Enright M.C., Foster T.J., Moore C.E., Hurst L., Atkin R. et al.

Proc. Natl. Acad. Sci. U.S.A. 101:9786-9791(2004) · UniProtKB (5,242)

Insight into the genome of Aspergillus fumigatus: analysis of a 922 kb region encompassing the nitrate assimilation gene cluster.

Pain A., Woodward J.R., Quail M.A., Anderson M.J., Clark R., Collins M., Fosker N., Fraser A., Harris D.E., Larke N. et al.

Fungal Genet. Biol. 41:443-453(2004) · UniProtKB (341)

The complete genome sequence and analysis of Corynebacterium diphtheriae NCTC13129.

Cerdeno-Tarraga A.-M., Efstratiou A., Dover L.G., Holden M.T.G., Pallen M.J., Bentley S.D., Besra G.S., Churcher C.M., James K.D., De Zoysa A. et al.

Nucleic Acids Res. 31:6516-6523(2003) · UniProtKB (2,264)

Comparative analysis of the genome sequences of Bordetella pertussis, Bordetella parapertussis and Bordetella bronchiseptica.

Parkhill J., Sebaihia M., Preston A., Murphy L.D., Thomson N.R., Harris D.E., Holden M.T.G., Churcher C.M., Bentley S.D., Mungall K.L. et al.

Nat. Genet. 35:32-40(2003) · UniProtKB (12,383)

The complete genome sequence of Mycobacterium bovis.

Garnier T., Eiglmeier K., Camus J.-C., Medina N., Mansoor H., Pryor M., Duthoy S., Grondin S., Lacroix C., Monsempe C. et al.

Proc. Natl. Acad. Sci. U.S.A. 100:7877-7882(2003) · UniProtKB (3,910)

Sequencing and analysis of the genome of the Whipple's disease bacterium Tropheryma whipplei.

Bentley S.D., Maiwald M., Murphy L.D., Pallen M.J., Yeats C.A., Dover L.G., Norbertczak H.T., Besra G.S., Quail M.A., Harris D.E. et al.

Lancet 361:637-644(2003) · UniProtKB (781)

Sequence of Plasmodium falciparum chromosomes 1, 3-9 and 13.

Hall N., Pain A., Berriman M., Churcher C.M., Harris B., Harris D., Mungall K.L., Bowman S., Atkin R., Baker S. et al.

Nature 419:527-531(2002) · UniProtKB (2,916)

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