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Characterization of the rapamycin-sensitive phosphoproteome reveals that Sch9 is a central coordinator of protein synthesis.

Huber A., Bodenmiller B., Uotila A., Stahl M., Wanka S., Gerrits B., Aebersold R., Loewith R.

Genes Dev. 23:1929-1943(2009) · Mapped (105)

Full dynamic range proteome analysis of S. cerevisiae by targeted proteomics.

Picotti P., Bodenmiller B., Mueller L.N., Domon B., Aebersold R.

Cell 138:795-806(2009) · Mapped (83)

Comparative profiling identifies C13orf3 as a component of the Ska complex required for mammalian cell division.

Theis M., Slabicki M., Junqueira M., Paszkowski-Rogacz M., Sontheimer J., Kittler R., Heninger A.K., Glatter T., Kruusmaa K., Poser I. et al.

EMBO J. 28:1453-1465(2009) · Mapped (1)

Mass-spectrometric identification and relative quantification of N-linked cell surface glycoproteins.

Wollscheid B., Bausch-Fluck D., Henderson C., O'Brien R., Bibel M., Schiess R., Aebersold R., Watts J.D.

Nat. Biotechnol. 27:378-386(2009) · UniProtKB (346)

Comparative functional analysis of the Caenorhabditis elegans and Drosophila melanogaster proteomes.

Schrimpf S.P., Weiss M., Reiter L., Ahrens C.H., Jovanovic M., Malmstrom J., Brunner E., Mohanty S., Lercher M.J., Hunziker P.E. et al.

PLoS Biol. 7:e48-e48(2009) · Mapped (1)

The Drosophila melanogaster PeptideAtlas facilitates the use of peptide data for improved fly proteomics and genome annotation.

FlyBase Consortium

BMC Bioinformatics 10:59-59(2009) · Mapped (10)

Ubiquitin-related modifier Urm1 acts as a sulphur carrier in thiolation of eukaryotic transfer RNA.

Leidel S., Pedrioli P.G.A., Bucher T., Brost R., Costanzo M., Schmidt A., Aebersold R., Boone C., Hofmann K., Peter M.

Nature 458:228-233(2009) · UniProtKB (5) · Mapped (2)

Regulation of PKD by the MAPK p38delta in insulin secretion and glucose homeostasis.

Sumara G., Formentini I., Collins S., Sumara I., Windak R., Bodenmiller B., Ramracheya R., Caille D., Jiang H., Platt K.A. et al.

Cell 136:235-248(2009) · Mapped (3)

Corra: Computational framework and tools for LC-MS discovery and targeted mass spectrometry-based proteomics.

Brusniak M.Y., Bodenmiller B., Campbell D., Cooke K., Eddes J., Garbutt A., Lau H., Letarte S., Mueller L.N., Sharma V. et al.

BMC Bioinformatics 9:542-542(2008) · Mapped (1)

A proteome catalog of Drosophila melanogaster: an essential resource for targeted quantitative proteomics.

Ahrens C.H., Brunner E., Hafen E., Aebersold R., Basler K.

Fly (Austin) 1:182-186(2007) · Mapped (41)

CTCF physically links cohesin to chromatin.

Rubio E.D., Reiss D.J., Welcsh P.L., Disteche C.M., Filippova G.N., Baliga N.S., Aebersold R., Ranish J.A., Krumm A.

Proc. Natl. Acad. Sci. U.S.A. 105:8309-8314(2008) · UniProtKB (1) · Mapped (7)

Atbf1 is required for the Pit1 gene early activation.

Qi Y., Ranish J.A., Zhu X., Krones A., Zhang J., Aebersold R., Rose D.W., Rosenfeld M.G., Carriere C.

Proc. Natl. Acad. Sci. U.S.A. 105:2481-2486(2008) · Mapped (20)

Quantitative proteomic analysis of protein complexes: concurrent identification of interactors and their state of phosphorylation.

Pflieger D., Junger M.A., Muller M., Rinner O., Lee H., Gehrig P.M., Gstaiger M., Aebersold R.

Mol. Cell Proteomics 7:326-346(2008) · Mapped (3)

S6K1-mediated disassembly of mitochondrial URI/PP1gamma complexes activates a negative feedback program that counters S6K1 survival signaling.

Djouder N., Metzler S.C., Schmidt A., Wirbelauer C., Gstaiger M., Aebersold R., Hess D., Krek W.

Mol. Cell 28:28-40(2007) · Mapped (14)

The toposome, essential for sea urchin cell adhesion and development, is a modified iron-less calcium-binding transferrin.

Noll H., Alcedo J., Daube M., Frei E., Schiltz E., Hunt J., Humphries T., Matranga V., Hochstrasser M., Aebersold R. et al.

Dev. Biol. 310:54-70(2007) · UniProtKB (2)

Activator-mediated recruitment of the MLL2 methyltransferase complex to the beta-globin locus.

Demers C., Chaturvedi C.-P., Ranish J.A., Juban G., Lai P., Morle F., Aebersold R., Dilworth F.J., Groudine M., Brand M.

Mol. Cell 27:573-584(2007) · UniProtKB (2) · Mapped (3)

An essential switch in subunit composition of a chromatin remodeling complex during neural development.

Lessard J., Wu J.I., Ranish J.A., Wan M., Winslow M.M., Staahl B.T., Wu H., Aebersold R., Graef I.A., Crabtree G.R.

Neuron 55:201-215(2007) · Mapped (12)

SPARC from olfactory ensheathing cells stimulates Schwann cells to promote neurite outgrowth and enhances spinal cord repair.

Au E., Richter M.W., Vincent A.J., Tetzlaff W., Aebersold R., Sage E.H., Roskams A.J.

J. Neurosci. 27:7208-7221(2007) · Mapped (1)

An integrated chemical, mass spectrometric and computational strategy for (quantitative) phosphoproteomics: application to Drosophila melanogaster Kc167 cells.

Bodenmiller B., Mueller L.N., Pedrioli P.G.A., Pflieger D., Juenger M.A., Eng J.K., Aebersold R., Tao W.A.

Mol. Biosyst. 3:275-286(2007) · UniProtKB (369)

An ent-kaurene that inhibits mitotic chromosome movement and binds the kinetochore protein ran-binding protein 2.

Rundle N.T., Nelson J., Flory M.R., Joseph J., Th'ng J., Aebersold R., Dasso M., Andersen R.J., Roberge M.

ACS Chem. Biol. 1:443-450(2006) · Mapped (4)

Quantitative proteomic analysis of B cell lipid rafts reveals that ezrin regulates antigen receptor-mediated lipid raft dynamics.

Gupta N., Wollscheid B., Watts J.D., Scheer B., Aebersold R., DeFranco A.L.

Nat. Immunol. 7:625-633(2006) · Mapped (18)

Proteomic analysis of the binding partners to enteropathogenic Escherichia coli virulence proteins expressed in Saccharomyces cerevisiae.

Hardwidge P.R., Donohoe S., Aebersold R., Finlay B.B.

Proteomics 6:2174-2179(2006) · Mapped (40)

Biosynthesis of dermatan sulfate: chondroitin-glucuronate C5-epimerase is identical to SART2.

Maccarana M., Olander B., Malmstroem J., Tiedemann K., Aebersold R., Lindahl U., Li J.-P., Malmstroem A.

J. Biol. Chem. 281:11560-11568(2006) · UniProtKB (2)

Identification and characterization of SAP25, a novel component of the mSin3 corepressor complex.

Shiio Y., Rose D.W., Aur R., Donohoe S., Aebersold R., Eisenman R.N.

Mol. Cell. Biol. 26:1386-1397(2006) · UniProtKB (2) · Mapped (7)

Quantitative proteomic analysis of myc-induced apoptosis: a direct role for Myc induction of the mitochondrial chloride ion channel, mtCLIC/CLIC4.

Shiio Y., Suh K.S., Lee H., Yuspa S.H., Eisenman R.N., Aebersold R.

J. Biol. Chem. 281:2750-2756(2006) · Mapped (13)

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