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Plant protein annotation project

Statistics

UniProt release 2018_05 - May-23, 2018 contains a total of 557,491 reviewed entries, which includes 39,503 entries from 1,999 species of Viridiplantae.

Arabidospis thaliana - 15,747 reviewed entries.

Number of canonical and isoform protein sequences: 17,941 (download data in FASTA format)

Evidence for the existence of protein Percentage of entries
at protein level 42.2%
at transcript level 43.7%
inferred from homology 10.3%
predicted 3.1%
uncertain 0.7%

Annotation categories Entries with Number of annotations Coverage
PubMed citations 15,747 12,877 unique 100%
Alternative products 3,125 8,503 19.8%
General annotation 15,171 71,146 96.3%
Function 10,952 11,070 69.5%
Catalytic activity 4,265 4,721 27.1%
Subcellular location 11,827 24,794 N/A
Sequence annotation 15,147 140,333 96.2%
Amino acid modifications 4,940 18,760 31.4%
Natural Variant 128 815 0.8%
Cross-references 15,747 0 100%
EMBL 15,717 0 99.8%
InterPro 14,988 0 95.2%
PDB 579 0 3.7%
RefSeq 15,424 0 97.9%
TAIR 14,507 0 92.1%

100% of reviewed Arabidopsis thaliana entries are annotated with at least one keyword .

95.7% of reviewed Arabidopsis thaliana entries are annotated with at least one GO (Gene Ontology ) term.

Oryza sativa subsp. japonica (Rice) - 3,939 reviewed entries.

Number of canonical and isoform protein sequences: 4,248 (download data in FASTA format)

Evidence for the existence of protein Percentage of entries
at protein level 17.4%
at transcript level 65.2%
inferred from homology 16.8%
predicted 0.3%
uncertain 0.4%

Annotation categories Entries with Number of annotations Coverage
PubMed citations 3,939 1,636 unique 100%
Alternative products 286 747 7.3%
General annotation 3,865 16,939 98.1%
Function 3,095 3,126 78.6%
Catalytic activity 1,355 1,482 34.4%
Subcellular location 2,794 uniprot:(organism:39947 reviewed:yes) 70.9%
Sequence annotation 3,707 30,460 94.1%
Amino acid modifications 791 2,510 20.1%
Natural Variant 8 23 0.2%
Cross-references 3,939 0 100%
EMBL 3,939 0 100%
InterPro 3,873 0 98.3%
PDB 69 0 1.8%
RefSeq 3,420 0 86.8%

100% of reviewed Oryza sativa subsp. japonica entries are annotated with at least one keyword .

98.7% of reviewed Oryza sativa subsp. japonica entries are annotated with at least one GO (Gene Ontology ) term.

Oryza sativa subsp. indica (Rice) - 816 reviewed entries.

Number of canonical and isoform protein sequences: 826 (download data in FASTA format)

Evidence for the existence of protein Percentage of entries
at protein level 8.7%
at transcript level 27.1%
inferred from homology 62.7%
predicted 1.3%
uncertain 0.1%

Annotation categories Entries with Number of annotations Coverage
PubMed citations 816 239 unique 100%
Alternative products 7 19 0.9%
General annotation 811 2,910 99.4%
Function 689 700 84.4%
Catalytic activity 243 275 29.8%
Subcellular location 649 1,269 79.5%
Sequence annotation 756 5,659 92.6%
Amino acid modifications 149 445 18.3%
Natural Variant 5 8 0.6%
Cross-references 816 0 100%
EMBL 816 0 100%
InterPro 784 0 96.1%
PDB 4 0 0.5%
RefSeq 71 0 8.7%

99.9% of reviewed Oryza sativa subsp. indica entries are annotated with at least one keyword .

98.9% of reviewed Oryza sativa subsp. indica entries are annotated with at least one GO (Gene Ontology ) term.

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