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Plant protein annotation project

Statistics

UniProt release 2017_08 - Aug-30, 2017 contains a total of 555,426 reviewed entries, which includes 39,030 entries from 2,022 species of Viridiplantae.

Arabidospis thaliana - 15,443 reviewed entries.

Number of canonical and isoform protein sequences: 21,026 (download data in FASTA format)

Evidence for the existence of protein Percentage of entries
at protein level 40.4%
at transcript level 45.4%
inferred from homology 10.4%
predicted 3.1%
uncertain 0.7%

Annotation categories Entries with Number of annotations Coverage
PubMed citations 15,443 12,557 unique 100%
Alternative products 3,079 6,426 19.9%
General annotation 14,879 69,653 96.3%
Function 10,713 10,823 69.4%
Catalytic activity 4,192 4,626 27.1%
Subcellular location 0 0 N/A
Sequence annotation 14,847 134,557 96.1%
Amino acid modifications 4,808 17,451 31.1%
Natural Variant 127 814 0.8%
Cross-references 15,443 600,138 100%
EMBL 15,413 76,171 99.8%
InterPro 14,711 45,853 95.3%
PDB 542 1,211 3.5%
RefSeq 15,260 21,432 98.8%
TAIR 14,221 14,276 92.1%

100% of reviewed Arabidopsis thaliana entries are annotated with at least one keyword .

95.6% of reviewed Arabidopsis thaliana entries are annotated with at least one GO (Gene Ontology ) term.

Oryza sativa subsp. japonica (Rice) - 3,865 reviewed entries.

Number of canonical and isoform protein sequences: 5,384 (download data in FASTA format)

Evidence for the existence of protein Percentage of entries
at protein level 16.4%
at transcript level 66%
inferred from homology 16.9%
predicted 0.3%
uncertain 0.4%

Annotation categories Entries with Number of annotations Coverage
PubMed citations 3,865 1,535 unique 100%
Alternative products 284 596 7.3%
General annotation 3,791 16,475 98.1%
Function 3,008 3,039 77.8%
Catalytic activity 1,330 1,451 34.4%
Subcellular location 0 0 N/A
Sequence annotation 3,632 29,598 94%
Amino acid modifications 783 2,494 20.3%
Natural Variant 8 23 0.2%
Cross-references 3,865 123,253 100%
EMBL 3,865 20,429 100%
InterPro 3,799 13,218 98.3%
PDB 57 132 1.5%
RefSeq 3,352 4,018 86.7%

100% of reviewed Oryza sativa subsp. japonica entries are annotated with at least one keyword .

98.8% of reviewed Oryza sativa subsp. japonica entries are annotated with at least one GO (Gene Ontology ) term.

Oryza sativa subsp. indica (Rice) - 810 reviewed entries.

Number of canonical and isoform protein sequences: 857 (download data in FASTA format)

Evidence for the existence of protein Percentage of entries
at protein level 8.5%
at transcript level 27.4%
inferred from homology 62.6%
predicted 1.4%
uncertain 0.1%

Annotation categories Entries with Number of annotations Coverage
PubMed citations 810 236 unique 100%
Alternative products 7 17 0.9%
General annotation 805 2,871 99.4%
Function 682 693 84.2%
Catalytic activity 238 267 29.4%
Subcellular location 0 0 N/A
Sequence annotation 750 5,507 92.6%
Amino acid modifications 147 439 18.1%
Natural Variant 5 8 0.6%
Cross-references 810 15,365 100%
EMBL 810 1,345 100%
InterPro 780 2,503 96.3%
PDB 2 2 0.2%
RefSeq 71 130 8.8%

99.9% of reviewed Oryza sativa subsp. indica entries are annotated with at least one keyword .

98.8% of reviewed Oryza sativa subsp. indica entries are annotated with at least one GO (Gene Ontology ) term.